data_6XBM # _model_server_result.job_id l5DkrMmjd8xoW7-11PeQaQ _model_server_result.datetime_utc '2024-10-11 00:31:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":702}' # _entry.id 6XBM # _exptl.entry_id 6XBM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 400.637 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '17-[3-(3,3-DIMETHYL-OXIRANYL)-1-METHYL-PROPYL]-10,13-DIMETHYL-2,3,4,7,8,9,10,11,12,13,14,15,16,17-TETRADECAHYDRO-1H-CYC LOPENTA[A]PHENANTHREN-3-OL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XBM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 193 R CYS 193 1_555 A SG CYS 213 R CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 217 R CYS 217 1_555 A SG CYS 295 R CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 314 R CYS 314 1_555 A SG CYS 390 R CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 E SG CYS 22 S CYS 22 1_555 E SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf5 E SG CYS 159 S CYS 147 1_555 E SG CYS 229 S CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C27 H44 O2' _chem_comp.formula_weight 400.637 _chem_comp.id CO1 _chem_comp.mon_nstd_flag . _chem_comp.name '17-[3-(3,3-DIMETHYL-OXIRANYL)-1-METHYL-PROPYL]-10,13-DIMETHYL-2,3,4,7,8,9,10,11,12,13,14,15,16,17-TETRADECAHYDRO-1H-CYC LOPENTA[A]PHENANTHREN-3-OL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 24,25(S)-EPOXYCHOLESTEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C22 CO1 sing 70 n n O24 H24 CO1 sing 71 n n C22 C18 CO1 sing 72 n n C22 C19 CO1 sing 73 n n C22 H22 CO1 sing 74 n n C18 C14 CO1 sing 75 n n C18 H181 CO1 sing 76 n n C18 H182 CO1 sing 77 n n C14 C9 CO1 doub 78 n n C14 C7 CO1 sing 79 n n C9 C4 CO1 sing 80 n n C9 H9 CO1 sing 81 n n C4 C1 CO1 sing 82 n n C4 H41 CO1 sing 83 n n C4 H42 CO1 sing 84 n n C1 C3 CO1 sing 85 n n C1 C2 CO1 sing 86 n n C1 H1 CO1 sing 87 n n C3 C8 CO1 sing 88 n n C3 C7 CO1 sing 89 n n C3 H3 CO1 sing 90 n n C8 C11 CO1 sing 91 n n C8 H81 CO1 sing 92 n n C8 H82 CO1 sing 93 n n C11 C5 CO1 sing 94 n n C11 H111 CO1 sing 95 n n C11 H112 CO1 sing 96 n n C5 C12 CO1 sing 97 n n C5 C10 CO1 sing 98 n n C5 C2 CO1 sing 99 n n C12 H121 CO1 sing 100 n n C12 H122 CO1 sing 101 n n C12 H123 CO1 sing 102 n n C10 C13 CO1 sing 103 n n C10 C17 CO1 sing 104 n n C10 H10 CO1 sing 105 n n C13 C6 CO1 sing 106 n n C13 H131 CO1 sing 107 n n C13 H132 CO1 sing 108 n n C6 C2 CO1 sing 109 n n C6 H61 CO1 sing 110 n n C6 H62 CO1 sing 111 n n C2 H2 CO1 sing 112 n n C17 C21 CO1 sing 113 n n C17 C20 CO1 sing 114 n n C17 H17 CO1 sing 115 n n C21 H211 CO1 sing 116 n n C21 H212 CO1 sing 117 n n C21 H213 CO1 sing 118 n n C20 C23 CO1 sing 119 n n C20 H201 CO1 sing 120 n n C20 H202 CO1 sing 121 n n C23 C25 CO1 sing 122 n n C23 H231 CO1 sing 123 n n C23 H232 CO1 sing 124 n n C25 O27 CO1 sing 125 n n C25 C26 CO1 sing 126 n n C25 H25 CO1 sing 127 n n O27 C26 CO1 sing 128 n n C26 C28 CO1 sing 129 n n C26 C29 CO1 sing 130 n n C28 H281 CO1 sing 131 n n C28 H282 CO1 sing 132 n n C28 H283 CO1 sing 133 n n C29 H291 CO1 sing 134 n n C29 H292 CO1 sing 135 n n C29 H293 CO1 sing 136 n n C7 C16 CO1 sing 137 n n C7 C15 CO1 sing 138 n n C16 H161 CO1 sing 139 n n C16 H162 CO1 sing 140 n n C16 H163 CO1 sing 141 n n C15 C19 CO1 sing 142 n n C15 H151 CO1 sing 143 n n C15 H152 CO1 sing 144 n n C19 H191 CO1 sing 145 n n C19 H192 CO1 sing 146 n n # _atom_sites.entry_id 6XBM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CO1 R 1 701 1 CO1 CO1 . G 6 CO1 R 1 702 2 CO1 CO1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O24 CO1 . . . G 6 96.296 145.927 160.541 1 194.35 ? O24 CO1 702 R 1 HETATM 2 C C22 CO1 . . . G 6 96.497 145.195 159.308 1 194.29 ? C22 CO1 702 R 1 HETATM 3 C C18 CO1 . . . G 6 97.621 144.112 159.53 1 194.31 ? C18 CO1 702 R 1 HETATM 4 C C14 CO1 . . . G 6 97.962 143.358 158.198 1 194.34 ? C14 CO1 702 R 1 HETATM 5 C C9 CO1 . . . G 6 97.982 141.984 158.192 1 194.36 ? C9 CO1 702 R 1 HETATM 6 C C4 CO1 . . . G 6 98.051 141.196 156.894 1 194.43 ? C4 CO1 702 R 1 HETATM 7 C C1 CO1 . . . G 6 98.805 142.012 155.774 1 194.46 ? C1 CO1 702 R 1 HETATM 8 C C3 CO1 . . . G 6 98.143 143.432 155.523 1 194.4 ? C3 CO1 702 R 1 HETATM 9 C C8 CO1 . . . G 6 98.643 144.251 154.25 1 194.5 ? C8 CO1 702 R 1 HETATM 10 C C11 CO1 . . . G 6 98.891 143.333 153.035 1 194.58 ? C11 CO1 702 R 1 HETATM 11 C C5 CO1 . . . G 6 99.772 142.06 153.428 1 194.64 ? C5 CO1 702 R 1 HETATM 12 C C12 CO1 . . . G 6 101.177 142.519 154.056 1 194.62 ? C12 CO1 702 R 1 HETATM 13 C C10 CO1 . . . G 6 99.912 140.999 152.28 1 194.7 ? C10 CO1 702 R 1 HETATM 14 C C13 CO1 . . . G 6 99.827 139.602 152.971 1 194.68 ? C13 CO1 702 R 1 HETATM 15 C C6 CO1 . . . G 6 99.404 139.84 154.429 1 194.68 ? C6 CO1 702 R 1 HETATM 16 C C2 CO1 . . . G 6 98.854 141.273 154.408 1 194.59 ? C2 CO1 702 R 1 HETATM 17 C C17 CO1 . . . G 6 101.211 141.288 151.361 1 194.83 ? C17 CO1 702 R 1 HETATM 18 C C21 CO1 . . . G 6 101.059 142.523 150.411 1 194.65 ? C21 CO1 702 R 1 HETATM 19 C C20 CO1 . . . G 6 101.724 140.067 150.606 1 195.12 ? C20 CO1 702 R 1 HETATM 20 C C23 CO1 . . . G 6 100.605 139.554 149.722 1 195.6 ? C23 CO1 702 R 1 HETATM 21 C C25 CO1 . . . G 6 101.081 138.306 149.031 1 196.11 ? C25 CO1 702 R 1 HETATM 22 O O27 CO1 . . . G 6 101.571 138.402 147.731 1 196.47 ? O27 CO1 702 R 1 HETATM 23 C C26 CO1 . . . G 6 100.24 137.8 147.908 1 196.45 ? C26 CO1 702 R 1 HETATM 24 C C28 CO1 . . . G 6 100.143 136.284 147.771 1 196.51 ? C28 CO1 702 R 1 HETATM 25 C C29 CO1 . . . G 6 99.008 138.618 147.536 1 196.37 ? C29 CO1 702 R 1 HETATM 26 C C7 CO1 . . . G 6 98.237 144.287 156.885 1 194.37 ? C7 CO1 702 R 1 HETATM 27 C C16 CO1 . . . G 6 99.653 144.989 157.032 1 194.32 ? C16 CO1 702 R 1 HETATM 28 C C15 CO1 . . . G 6 97.075 145.335 156.803 1 194.36 ? C15 CO1 702 R 1 HETATM 29 C C19 CO1 . . . G 6 96.848 146.14 158.099 1 194.3 ? C19 CO1 702 R 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #