data_6XCO
#
_model_server_result.job_id            kQkXMyrYD9RuYRQUmRcsSg 
_model_server_result.datetime_utc      '2024-12-20 19:11:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xco 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    6XCO 
#
_exptl.entry_id    6XCO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.914 
_cell.angle_gamma         90 
_cell.entry_id            6XCO 
_cell.length_a            69.288 
_cell.length_b            104.31 
_cell.length_c            69.316 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XCO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
? 6 M N N 
? 6 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 75 A CYS 72 1_555 B SG CYS 14 B CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 110 A CYS 107 1_555 A SG CYS 166 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 45 B CYS 57 1_555 B SG CYS 109 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 147 B CYS 159 1_555 B SG CYS 203 B CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 C SG CYS 24 D CYS 23 1_555 C SG CYS 89 D CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 134 D CYS 149 1_555 C SG CYS 184 D CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 C SG CYS 159 D CYS 174 1_555 D SG CYS 167 E CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 D SG CYS 22 E CYS 23 1_555 D SG CYS 90 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 D SG CYS 141 E CYS 155 1_555 D SG CYS 206 E CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 81 A ASN 78 1_555 F C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale2 A ND2 ASN 121 A ASN 118 1_555 E C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale3 B ND2 ASN 49 B ASN 61 1_555 I C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 139 n n 
C1 C2 GOL sing 140 n n 
C1 H11 GOL sing 141 n n 
C1 H12 GOL sing 142 n n 
O1 HO1 GOL sing 143 n n 
C2 O2 GOL sing 144 n n 
C2 C3 GOL sing 145 n n 
C2 H2 GOL sing 146 n n 
O2 HO2 GOL sing 147 n n 
C3 O3 GOL sing 148 n n 
C3 H31 GOL sing 149 n n 
C3 H32 GOL sing 150 n n 
O3 HO3 GOL sing 151 n n 
#
_atom_sites.entry_id                     6XCO 
_atom_sites.fract_transf_matrix[1][1]    0.014433 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006704 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009587 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015907 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 NAG A 1 201 2 NAG NAG . 
F 5 NAG A 1 202 4 NAG NAG . 
G 6 GOL A 1 203 12 GOL GOL . 
H 7 CAC A 1 204 1 CAC CAC . 
I 5 NAG B 1 301 3 NAG NAG . 
J 6 GOL B 1 302 6 GOL GOL . 
K 6 GOL D 1 301 1 GOL GOL . 
L 6 GOL D 1 302 13 GOL GOL . 
M 6 GOL E 1 301 4 GOL GOL . 
N 6 GOL E 1 302 8 GOL GOL . 
O 8 HOH A 1 301 222 HOH HOH . 
O 8 HOH A 2 302 476 HOH HOH . 
O 8 HOH A 3 303 256 HOH HOH . 
O 8 HOH A 4 304 467 HOH HOH . 
O 8 HOH A 5 305 336 HOH HOH . 
O 8 HOH A 6 306 280 HOH HOH . 
O 8 HOH A 7 307 461 HOH HOH . 
O 8 HOH A 8 308 464 HOH HOH . 
O 8 HOH A 9 309 32 HOH HOH . 
O 8 HOH A 10 310 460 HOH HOH . 
O 8 HOH A 11 311 13 HOH HOH . 
O 8 HOH A 12 312 455 HOH HOH . 
O 8 HOH A 13 313 298 HOH HOH . 
O 8 HOH A 14 314 431 HOH HOH . 
O 8 HOH A 15 315 40 HOH HOH . 
O 8 HOH A 16 316 18 HOH HOH . 
O 8 HOH A 17 317 444 HOH HOH . 
P 8 HOH B 1 401 230 HOH HOH . 
P 8 HOH B 2 402 306 HOH HOH . 
P 8 HOH B 3 403 335 HOH HOH . 
P 8 HOH B 4 404 199 HOH HOH . 
P 8 HOH B 5 405 303 HOH HOH . 
P 8 HOH B 6 406 477 HOH HOH . 
P 8 HOH B 7 407 100 HOH HOH . 
P 8 HOH B 8 408 320 HOH HOH . 
P 8 HOH B 9 409 302 HOH HOH . 
P 8 HOH B 10 410 459 HOH HOH . 
Q 8 HOH D 1 401 375 HOH HOH . 
Q 8 HOH D 2 402 479 HOH HOH . 
Q 8 HOH D 3 403 329 HOH HOH . 
Q 8 HOH D 4 404 239 HOH HOH . 
Q 8 HOH D 5 405 370 HOH HOH . 
Q 8 HOH D 6 406 469 HOH HOH . 
Q 8 HOH D 7 407 273 HOH HOH . 
Q 8 HOH D 8 408 462 HOH HOH . 
Q 8 HOH D 9 409 478 HOH HOH . 
Q 8 HOH D 10 410 380 HOH HOH . 
Q 8 HOH D 11 411 242 HOH HOH . 
Q 8 HOH D 12 412 97 HOH HOH . 
Q 8 HOH D 13 413 363 HOH HOH . 
Q 8 HOH D 14 414 265 HOH HOH . 
Q 8 HOH D 15 415 36 HOH HOH . 
Q 8 HOH D 16 416 195 HOH HOH . 
Q 8 HOH D 17 417 458 HOH HOH . 
R 8 HOH E 1 401 470 HOH HOH . 
R 8 HOH E 2 402 235 HOH HOH . 
R 8 HOH E 3 403 439 HOH HOH . 
R 8 HOH E 4 404 421 HOH HOH . 
R 8 HOH E 5 405 474 HOH HOH . 
R 8 HOH E 6 406 350 HOH HOH . 
R 8 HOH E 7 407 475 HOH HOH . 
R 8 HOH E 8 408 447 HOH HOH . 
R 8 HOH E 9 409 21 HOH HOH . 
R 8 HOH E 10 410 236 HOH HOH . 
R 8 HOH E 11 411 382 HOH HOH . 
R 8 HOH E 12 412 472 HOH HOH . 
R 8 HOH E 13 413 456 HOH HOH . 
R 8 HOH E 14 414 451 HOH HOH . 
R 8 HOH E 15 415 291 HOH HOH . 
R 8 HOH E 16 416 448 HOH HOH . 
R 8 HOH E 17 417 441 HOH HOH . 
R 8 HOH E 18 418 35 HOH HOH . 
R 8 HOH E 19 419 457 HOH HOH . 
R 8 HOH E 20 420 463 HOH HOH . 
R 8 HOH E 21 421 254 HOH HOH . 
R 8 HOH E 22 422 471 HOH HOH . 
R 8 HOH E 23 423 473 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 6 -40.917 40.328 -10.432 1 84.38 ? C1 GOL 301 E 1 
HETATM 2 O O1 GOL . . . M 6 -41.167 39.013 -10.817 1 80.73 ? O1 GOL 301 E 1 
HETATM 3 C C2 GOL . . . M 6 -39.673 40.79 -11.222 1 86.88 ? C2 GOL 301 E 1 
HETATM 4 O O2 GOL . . . M 6 -39.799 40.521 -12.577 1 87.88 ? O2 GOL 301 E 1 
HETATM 5 C C3 GOL . . . M 6 -39.544 42.309 -10.929 1 81.75 ? C3 GOL 301 E 1 
HETATM 6 O O3 GOL . . . M 6 -38.203 42.648 -11.122 1 76.86 ? O3 GOL 301 E 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           255 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#