data_6XCX # _model_server_result.job_id Zr5TsTfWTgjr7GnzNgMoOA _model_server_result.datetime_utc '2024-11-15 09:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6XCX # _exptl.entry_id 6XCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XCX _cell.length_a 80.67 _cell.length_b 94.98 _cell.length_c 61.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEC _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.649 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 142 n n FE NB HEC sing 143 n n FE NC HEC sing 144 n n FE ND HEC sing 145 n n CHA C1A HEC doub 146 n n CHA C4D HEC sing 147 n n CHA HHA HEC sing 148 n n CHB C4A HEC doub 149 n n CHB C1B HEC sing 150 n n CHB HHB HEC sing 151 n n CHC C4B HEC doub 152 n n CHC C1C HEC sing 153 n n CHC HHC HEC sing 154 n n CHD C4C HEC doub 155 n n CHD C1D HEC sing 156 n n CHD HHD HEC sing 157 n n NA C1A HEC sing 158 n y NA C4A HEC sing 159 n y C1A C2A HEC sing 160 n y C2A C3A HEC doub 161 n y C2A CAA HEC sing 162 n n C3A C4A HEC sing 163 n y C3A CMA HEC sing 164 n n CMA HMA1 HEC sing 165 n n CMA HMA2 HEC sing 166 n n CMA HMA3 HEC sing 167 n n CAA CBA HEC sing 168 n n CAA HAA1 HEC sing 169 n n CAA HAA2 HEC sing 170 n n CBA CGA HEC sing 171 n n CBA HBA1 HEC sing 172 n n CBA HBA2 HEC sing 173 n n CGA O1A HEC doub 174 n n CGA O2A HEC sing 175 n n O2A H2A HEC sing 176 n n NB C1B HEC sing 177 n y NB C4B HEC sing 178 n y C1B C2B HEC doub 179 n y C2B C3B HEC sing 180 n y C2B CMB HEC sing 181 n n C3B C4B HEC sing 182 n y C3B CAB HEC doub 183 e n CMB HMB1 HEC sing 184 n n CMB HMB2 HEC sing 185 n n CMB HMB3 HEC sing 186 n n CAB CBB HEC sing 187 n n CAB HAB HEC sing 188 n n CBB HBB1 HEC sing 189 n n CBB HBB2 HEC sing 190 n n CBB HBB3 HEC sing 191 n n NC C1C HEC sing 192 n y NC C4C HEC sing 193 n y C1C C2C HEC doub 194 n y C2C C3C HEC sing 195 n y C2C CMC HEC sing 196 n n C3C C4C HEC sing 197 n y C3C CAC HEC doub 198 e n CMC HMC1 HEC sing 199 n n CMC HMC2 HEC sing 200 n n CMC HMC3 HEC sing 201 n n CAC CBC HEC sing 202 n n CAC HAC HEC sing 203 n n CBC HBC1 HEC sing 204 n n CBC HBC2 HEC sing 205 n n CBC HBC3 HEC sing 206 n n ND C1D HEC sing 207 n y ND C4D HEC sing 208 n y C1D C2D HEC doub 209 n y C2D C3D HEC sing 210 n y C2D CMD HEC sing 211 n n C3D C4D HEC doub 212 n y C3D CAD HEC sing 213 n n CMD HMD1 HEC sing 214 n n CMD HMD2 HEC sing 215 n n CMD HMD3 HEC sing 216 n n CAD CBD HEC sing 217 n n CAD HAD1 HEC sing 218 n n CAD HAD2 HEC sing 219 n n CBD CGD HEC sing 220 n n CBD HBD1 HEC sing 221 n n CBD HBD2 HEC sing 222 n n CGD O1D HEC doub 223 n n CGD O2D HEC sing 224 n n O2D H2D HEC sing 225 n n # _atom_sites.entry_id 6XCX _atom_sites.fract_transf_matrix[1][1] 0.012396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 901 901 HEC HEM . C 3 CL A 1 902 1 CL CL . D 4 GOL A 1 903 1 GOL GOL . E 5 POL A 1 904 1 POL POL . F 5 POL A 1 905 2 POL POL . G 6 PEG A 1 906 1 PEG PEG . H 7 V0P A 1 907 1 V0P PWA . I 8 HOH A 1 1001 58 HOH HOH . I 8 HOH A 2 1002 29 HOH HOH . I 8 HOH A 3 1003 16 HOH HOH . I 8 HOH A 4 1004 78 HOH HOH . I 8 HOH A 5 1005 70 HOH HOH . I 8 HOH A 6 1006 54 HOH HOH . I 8 HOH A 7 1007 11 HOH HOH . I 8 HOH A 8 1008 81 HOH HOH . I 8 HOH A 9 1009 84 HOH HOH . I 8 HOH A 10 1010 76 HOH HOH . I 8 HOH A 11 1011 104 HOH HOH . I 8 HOH A 12 1012 7 HOH HOH . I 8 HOH A 13 1013 98 HOH HOH . I 8 HOH A 14 1014 68 HOH HOH . I 8 HOH A 15 1015 36 HOH HOH . I 8 HOH A 16 1016 46 HOH HOH . I 8 HOH A 17 1017 77 HOH HOH . I 8 HOH A 18 1018 34 HOH HOH . I 8 HOH A 19 1019 1 HOH HOH . I 8 HOH A 20 1020 91 HOH HOH . I 8 HOH A 21 1021 57 HOH HOH . I 8 HOH A 22 1022 15 HOH HOH . I 8 HOH A 23 1023 66 HOH HOH . I 8 HOH A 24 1024 43 HOH HOH . I 8 HOH A 25 1025 13 HOH HOH . I 8 HOH A 26 1026 63 HOH HOH . I 8 HOH A 27 1027 71 HOH HOH . I 8 HOH A 28 1028 69 HOH HOH . I 8 HOH A 29 1029 14 HOH HOH . I 8 HOH A 30 1030 52 HOH HOH . I 8 HOH A 31 1031 9 HOH HOH . I 8 HOH A 32 1032 100 HOH HOH . I 8 HOH A 33 1033 3 HOH HOH . I 8 HOH A 34 1034 42 HOH HOH . I 8 HOH A 35 1035 102 HOH HOH . I 8 HOH A 36 1036 99 HOH HOH . I 8 HOH A 37 1037 109 HOH HOH . I 8 HOH A 38 1038 5 HOH HOH . I 8 HOH A 39 1039 12 HOH HOH . I 8 HOH A 40 1040 45 HOH HOH . I 8 HOH A 41 1041 105 HOH HOH . I 8 HOH A 42 1042 65 HOH HOH . I 8 HOH A 43 1043 8 HOH HOH . I 8 HOH A 44 1044 4 HOH HOH . I 8 HOH A 45 1045 30 HOH HOH . I 8 HOH A 46 1046 37 HOH HOH . I 8 HOH A 47 1047 22 HOH HOH . I 8 HOH A 48 1048 90 HOH HOH . I 8 HOH A 49 1049 50 HOH HOH . I 8 HOH A 50 1050 83 HOH HOH . I 8 HOH A 51 1051 24 HOH HOH . I 8 HOH A 52 1052 28 HOH HOH . I 8 HOH A 53 1053 60 HOH HOH . I 8 HOH A 54 1054 106 HOH HOH . I 8 HOH A 55 1055 87 HOH HOH . I 8 HOH A 56 1056 38 HOH HOH . I 8 HOH A 57 1057 10 HOH HOH . I 8 HOH A 58 1058 33 HOH HOH . I 8 HOH A 59 1059 17 HOH HOH . I 8 HOH A 60 1060 27 HOH HOH . I 8 HOH A 61 1061 51 HOH HOH . I 8 HOH A 62 1062 107 HOH HOH . I 8 HOH A 63 1063 2 HOH HOH . I 8 HOH A 64 1064 93 HOH HOH . I 8 HOH A 65 1065 74 HOH HOH . I 8 HOH A 66 1066 18 HOH HOH . I 8 HOH A 67 1067 20 HOH HOH . I 8 HOH A 68 1068 35 HOH HOH . I 8 HOH A 69 1069 48 HOH HOH . I 8 HOH A 70 1070 53 HOH HOH . I 8 HOH A 71 1071 6 HOH HOH . I 8 HOH A 72 1072 56 HOH HOH . I 8 HOH A 73 1073 40 HOH HOH . I 8 HOH A 74 1074 61 HOH HOH . I 8 HOH A 75 1075 97 HOH HOH . I 8 HOH A 76 1076 112 HOH HOH . I 8 HOH A 77 1077 103 HOH HOH . I 8 HOH A 78 1078 85 HOH HOH . I 8 HOH A 79 1079 19 HOH HOH . I 8 HOH A 80 1080 21 HOH HOH . I 8 HOH A 81 1081 95 HOH HOH . I 8 HOH A 82 1082 64 HOH HOH . I 8 HOH A 83 1083 89 HOH HOH . I 8 HOH A 84 1084 67 HOH HOH . I 8 HOH A 85 1085 39 HOH HOH . I 8 HOH A 86 1086 25 HOH HOH . I 8 HOH A 87 1087 72 HOH HOH . I 8 HOH A 88 1088 31 HOH HOH . I 8 HOH A 89 1089 23 HOH HOH . I 8 HOH A 90 1090 49 HOH HOH . I 8 HOH A 91 1091 86 HOH HOH . I 8 HOH A 92 1092 82 HOH HOH . I 8 HOH A 93 1093 26 HOH HOH . I 8 HOH A 94 1094 88 HOH HOH . I 8 HOH A 95 1095 41 HOH HOH . I 8 HOH A 96 1096 47 HOH HOH . I 8 HOH A 97 1097 75 HOH HOH . I 8 HOH A 98 1098 108 HOH HOH . I 8 HOH A 99 1099 80 HOH HOH . I 8 HOH A 100 1100 96 HOH HOH . I 8 HOH A 101 1101 59 HOH HOH . I 8 HOH A 102 1102 101 HOH HOH . I 8 HOH A 103 1103 62 HOH HOH . I 8 HOH A 104 1104 110 HOH HOH . I 8 HOH A 105 1105 111 HOH HOH . I 8 HOH A 106 1106 79 HOH HOH . I 8 HOH A 107 1107 55 HOH HOH . I 8 HOH A 108 1108 94 HOH HOH . I 8 HOH A 109 1109 73 HOH HOH . I 8 HOH A 110 1110 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 -0.149 17.275 21.799 1 28.78 ? FE HEC 901 A 1 HETATM 2 C CHA HEC . . . B 2 1.738 14.598 20.888 1 27.71 ? CHA HEC 901 A 1 HETATM 3 C CHB HEC . . . B 2 -0.94 15.608 24.807 1 22.33 ? CHB HEC 901 A 1 HETATM 4 C CHC HEC . . . B 2 -1.399 20.189 23.203 1 21.77 ? CHC HEC 901 A 1 HETATM 5 C CHD HEC . . . B 2 0.646 18.94 18.997 1 24.06 ? CHD HEC 901 A 1 HETATM 6 N NA HEC . . . B 2 0.235 15.5 22.643 1 26.41 ? NA HEC 901 A 1 HETATM 7 C C1A HEC . . . B 2 1.129 14.579 22.118 1 29.77 ? C1A HEC 901 A 1 HETATM 8 C C2A HEC . . . B 2 1.349 13.54 23.049 1 28.46 ? C2A HEC 901 A 1 HETATM 9 C C3A HEC . . . B 2 0.602 13.815 24.144 1 30.29 ? C3A HEC 901 A 1 HETATM 10 C C4A HEC . . . B 2 -0.083 15.025 23.899 1 29.51 ? C4A HEC 901 A 1 HETATM 11 C CMA HEC . . . B 2 0.515 12.984 25.401 1 25.1 ? CMA HEC 901 A 1 HETATM 12 C CAA HEC . . . B 2 2.234 12.33 22.867 1 30.88 ? CAA HEC 901 A 1 HETATM 13 C CBA HEC . . . B 2 3.568 12.525 23.589 1 34.37 ? CBA HEC 901 A 1 HETATM 14 C CGA HEC . . . B 2 4.255 11.201 23.822 1 39.91 ? CGA HEC 901 A 1 HETATM 15 O O1A HEC . . . B 2 5.429 11.197 24.251 1 46.63 ? O1A HEC 901 A 1 HETATM 16 O O2A HEC . . . B 2 3.664 10.114 23.604 1 47.71 ? O2A HEC 901 A 1 HETATM 17 N NB HEC . . . B 2 -0.984 17.779 23.668 1 24.2 ? NB HEC 901 A 1 HETATM 18 C C1B HEC . . . B 2 -1.24 16.966 24.702 1 26.89 ? C1B HEC 901 A 1 HETATM 19 C C2B HEC . . . B 2 -1.864 17.684 25.762 1 24.86 ? C2B HEC 901 A 1 HETATM 20 C C3B HEC . . . B 2 -2.015 18.968 25.346 1 25.45 ? C3B HEC 901 A 1 HETATM 21 C C4B HEC . . . B 2 -1.446 19.015 23.968 1 26 ? C4B HEC 901 A 1 HETATM 22 C CMB HEC . . . B 2 -2.292 17.149 27.107 1 23.72 ? CMB HEC 901 A 1 HETATM 23 C CAB HEC . . . B 2 -2.615 20.058 26.153 1 26.59 ? CAB HEC 901 A 1 HETATM 24 C CBB HEC . . . B 2 -3.376 21.013 25.61 1 25.79 ? CBB HEC 901 A 1 HETATM 25 N NC HEC . . . B 2 -0.39 19.25 21.192 1 26.58 ? NC HEC 901 A 1 HETATM 26 C C1C HEC . . . B 2 -0.834 20.295 21.935 1 24.31 ? C1C HEC 901 A 1 HETATM 27 C C2C HEC . . . B 2 -0.643 21.481 21.2 1 25.61 ? C2C HEC 901 A 1 HETATM 28 C C3C HEC . . . B 2 -0.059 21.133 19.979 1 25.72 ? C3C HEC 901 A 1 HETATM 29 C C4C HEC . . . B 2 0.107 19.712 20.001 1 25.47 ? C4C HEC 901 A 1 HETATM 30 C CMC HEC . . . B 2 -1.02 22.857 21.687 1 26.29 ? CMC HEC 901 A 1 HETATM 31 C CAC HEC . . . B 2 0.336 22.037 18.873 1 31.1 ? CAC HEC 901 A 1 HETATM 32 C CBC HEC . . . B 2 -0.414 23.057 18.457 1 29.63 ? CBC HEC 901 A 1 HETATM 33 N ND HEC . . . B 2 0.961 16.858 20.33 1 25.57 ? ND HEC 901 A 1 HETATM 34 C C1D HEC . . . B 2 1.133 17.646 19.249 1 26.95 ? C1D HEC 901 A 1 HETATM 35 C C2D HEC . . . B 2 2.016 16.99 18.273 1 23.88 ? C2D HEC 901 A 1 HETATM 36 C C3D HEC . . . B 2 2.323 15.786 18.788 1 26.74 ? C3D HEC 901 A 1 HETATM 37 C C4D HEC . . . B 2 1.635 15.717 20.086 1 27.54 ? C4D HEC 901 A 1 HETATM 38 C CMD HEC . . . B 2 2.463 17.573 16.956 1 23.64 ? CMD HEC 901 A 1 HETATM 39 C CAD HEC . . . B 2 3.205 14.718 18.175 1 28.24 ? CAD HEC 901 A 1 HETATM 40 C CBD HEC . . . B 2 4.686 15.12 18.225 1 31.69 ? CBD HEC 901 A 1 HETATM 41 C CGD HEC . . . B 2 5.578 13.974 17.794 1 33.65 ? CGD HEC 901 A 1 HETATM 42 O O1D HEC . . . B 2 6.628 13.72 18.427 1 35.07 ? O1D HEC 901 A 1 HETATM 43 O O2D HEC . . . B 2 5.282 13.278 16.797 1 35.24 ? O2D HEC 901 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #