data_6XCX # _model_server_result.job_id OQnT94XEjHWispO3lQeWdw _model_server_result.datetime_utc '2024-11-15 09:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":907}' # _entry.id 6XCX # _exptl.entry_id 6XCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.488 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-{[3-(2-{[(6-aminopyridin-2-yl)methyl]amino}ethoxy)phenoxy]methyl}quinolin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XCX _cell.length_a 80.67 _cell.length_b 94.98 _cell.length_c 61.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEC _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.649 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H25 N5 O2' _chem_comp.formula_weight 415.488 _chem_comp.id V0P _chem_comp.mon_nstd_flag . _chem_comp.name 7-{[3-(2-{[(6-aminopyridin-2-yl)methyl]amino}ethoxy)phenoxy]methyl}quinolin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 V0P doub 482 n y C14 C13 V0P sing 483 n y C15 C16 V0P sing 484 n y N01 C02 V0P sing 485 n n C03 C02 V0P doub 486 n y C03 C04 V0P sing 487 n y C02 N31 V0P sing 488 n y C13 C12 V0P doub 489 n y C04 C05 V0P doub 490 n y C16 O17 V0P sing 491 n n C16 C30 V0P doub 492 n y N31 C06 V0P doub 493 n y O17 C18 V0P sing 494 n n C20 C21 V0P doub 495 n y C20 C19 V0P sing 496 n y C05 C06 V0P sing 497 n y C06 C07 V0P sing 498 n n C21 C22 V0P sing 499 n y C12 C30 V0P sing 500 n y C12 O11 V0P sing 501 n n N08 C07 V0P sing 502 n n N08 C09 V0P sing 503 n n C18 C19 V0P sing 504 n n C19 C29 V0P doub 505 n y O11 C10 V0P sing 506 n n C22 C23 V0P doub 507 n y C22 C28 V0P sing 508 n y C23 C24 V0P sing 509 n y C09 C10 V0P sing 510 n n C29 C28 V0P sing 511 n y C28 N27 V0P doub 512 n y C24 C25 V0P doub 513 n y N27 C25 V0P sing 514 n y C25 N26 V0P sing 515 n n C03 H1 V0P sing 516 n n C04 H2 V0P sing 517 n n C05 H3 V0P sing 518 n n C07 H4 V0P sing 519 n n C07 H5 V0P sing 520 n n C09 H6 V0P sing 521 n n C09 H7 V0P sing 522 n n C10 H8 V0P sing 523 n n C10 H9 V0P sing 524 n n C13 H10 V0P sing 525 n n C14 H11 V0P sing 526 n n C15 H12 V0P sing 527 n n C18 H13 V0P sing 528 n n C18 H14 V0P sing 529 n n C20 H15 V0P sing 530 n n C21 H16 V0P sing 531 n n C23 H17 V0P sing 532 n n C24 H18 V0P sing 533 n n C29 H19 V0P sing 534 n n C30 H20 V0P sing 535 n n N01 H21 V0P sing 536 n n N01 H22 V0P sing 537 n n N08 H23 V0P sing 538 n n N26 H25 V0P sing 539 n n N26 H26 V0P sing 540 n n # _atom_sites.entry_id 6XCX _atom_sites.fract_transf_matrix[1][1] 0.012396 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 901 901 HEC HEM . C 3 CL A 1 902 1 CL CL . D 4 GOL A 1 903 1 GOL GOL . E 5 POL A 1 904 1 POL POL . F 5 POL A 1 905 2 POL POL . G 6 PEG A 1 906 1 PEG PEG . H 7 V0P A 1 907 1 V0P PWA . I 8 HOH A 1 1001 58 HOH HOH . I 8 HOH A 2 1002 29 HOH HOH . I 8 HOH A 3 1003 16 HOH HOH . I 8 HOH A 4 1004 78 HOH HOH . I 8 HOH A 5 1005 70 HOH HOH . I 8 HOH A 6 1006 54 HOH HOH . I 8 HOH A 7 1007 11 HOH HOH . I 8 HOH A 8 1008 81 HOH HOH . I 8 HOH A 9 1009 84 HOH HOH . I 8 HOH A 10 1010 76 HOH HOH . I 8 HOH A 11 1011 104 HOH HOH . I 8 HOH A 12 1012 7 HOH HOH . I 8 HOH A 13 1013 98 HOH HOH . I 8 HOH A 14 1014 68 HOH HOH . I 8 HOH A 15 1015 36 HOH HOH . I 8 HOH A 16 1016 46 HOH HOH . I 8 HOH A 17 1017 77 HOH HOH . I 8 HOH A 18 1018 34 HOH HOH . I 8 HOH A 19 1019 1 HOH HOH . I 8 HOH A 20 1020 91 HOH HOH . I 8 HOH A 21 1021 57 HOH HOH . I 8 HOH A 22 1022 15 HOH HOH . I 8 HOH A 23 1023 66 HOH HOH . I 8 HOH A 24 1024 43 HOH HOH . I 8 HOH A 25 1025 13 HOH HOH . I 8 HOH A 26 1026 63 HOH HOH . I 8 HOH A 27 1027 71 HOH HOH . I 8 HOH A 28 1028 69 HOH HOH . I 8 HOH A 29 1029 14 HOH HOH . I 8 HOH A 30 1030 52 HOH HOH . I 8 HOH A 31 1031 9 HOH HOH . I 8 HOH A 32 1032 100 HOH HOH . I 8 HOH A 33 1033 3 HOH HOH . I 8 HOH A 34 1034 42 HOH HOH . I 8 HOH A 35 1035 102 HOH HOH . I 8 HOH A 36 1036 99 HOH HOH . I 8 HOH A 37 1037 109 HOH HOH . I 8 HOH A 38 1038 5 HOH HOH . I 8 HOH A 39 1039 12 HOH HOH . I 8 HOH A 40 1040 45 HOH HOH . I 8 HOH A 41 1041 105 HOH HOH . I 8 HOH A 42 1042 65 HOH HOH . I 8 HOH A 43 1043 8 HOH HOH . I 8 HOH A 44 1044 4 HOH HOH . I 8 HOH A 45 1045 30 HOH HOH . I 8 HOH A 46 1046 37 HOH HOH . I 8 HOH A 47 1047 22 HOH HOH . I 8 HOH A 48 1048 90 HOH HOH . I 8 HOH A 49 1049 50 HOH HOH . I 8 HOH A 50 1050 83 HOH HOH . I 8 HOH A 51 1051 24 HOH HOH . I 8 HOH A 52 1052 28 HOH HOH . I 8 HOH A 53 1053 60 HOH HOH . I 8 HOH A 54 1054 106 HOH HOH . I 8 HOH A 55 1055 87 HOH HOH . I 8 HOH A 56 1056 38 HOH HOH . I 8 HOH A 57 1057 10 HOH HOH . I 8 HOH A 58 1058 33 HOH HOH . I 8 HOH A 59 1059 17 HOH HOH . I 8 HOH A 60 1060 27 HOH HOH . I 8 HOH A 61 1061 51 HOH HOH . I 8 HOH A 62 1062 107 HOH HOH . I 8 HOH A 63 1063 2 HOH HOH . I 8 HOH A 64 1064 93 HOH HOH . I 8 HOH A 65 1065 74 HOH HOH . I 8 HOH A 66 1066 18 HOH HOH . I 8 HOH A 67 1067 20 HOH HOH . I 8 HOH A 68 1068 35 HOH HOH . I 8 HOH A 69 1069 48 HOH HOH . I 8 HOH A 70 1070 53 HOH HOH . I 8 HOH A 71 1071 6 HOH HOH . I 8 HOH A 72 1072 56 HOH HOH . I 8 HOH A 73 1073 40 HOH HOH . I 8 HOH A 74 1074 61 HOH HOH . I 8 HOH A 75 1075 97 HOH HOH . I 8 HOH A 76 1076 112 HOH HOH . I 8 HOH A 77 1077 103 HOH HOH . I 8 HOH A 78 1078 85 HOH HOH . I 8 HOH A 79 1079 19 HOH HOH . I 8 HOH A 80 1080 21 HOH HOH . I 8 HOH A 81 1081 95 HOH HOH . I 8 HOH A 82 1082 64 HOH HOH . I 8 HOH A 83 1083 89 HOH HOH . I 8 HOH A 84 1084 67 HOH HOH . I 8 HOH A 85 1085 39 HOH HOH . I 8 HOH A 86 1086 25 HOH HOH . I 8 HOH A 87 1087 72 HOH HOH . I 8 HOH A 88 1088 31 HOH HOH . I 8 HOH A 89 1089 23 HOH HOH . I 8 HOH A 90 1090 49 HOH HOH . I 8 HOH A 91 1091 86 HOH HOH . I 8 HOH A 92 1092 82 HOH HOH . I 8 HOH A 93 1093 26 HOH HOH . I 8 HOH A 94 1094 88 HOH HOH . I 8 HOH A 95 1095 41 HOH HOH . I 8 HOH A 96 1096 47 HOH HOH . I 8 HOH A 97 1097 75 HOH HOH . I 8 HOH A 98 1098 108 HOH HOH . I 8 HOH A 99 1099 80 HOH HOH . I 8 HOH A 100 1100 96 HOH HOH . I 8 HOH A 101 1101 59 HOH HOH . I 8 HOH A 102 1102 101 HOH HOH . I 8 HOH A 103 1103 62 HOH HOH . I 8 HOH A 104 1104 110 HOH HOH . I 8 HOH A 105 1105 111 HOH HOH . I 8 HOH A 106 1106 79 HOH HOH . I 8 HOH A 107 1107 55 HOH HOH . I 8 HOH A 108 1108 94 HOH HOH . I 8 HOH A 109 1109 73 HOH HOH . I 8 HOH A 110 1110 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 V0P . . . H 7 6.643 4.312 20.554 1 44.35 ? C02 V0P 907 A 1 HETATM 2 C C03 V0P . . . H 7 5.427 3.643 20.478 1 34.67 ? C03 V0P 907 A 1 HETATM 3 C C04 V0P . . . H 7 4.299 4.314 20.949 1 39.6 ? C04 V0P 907 A 1 HETATM 4 C C05 V0P . . . H 7 4.41 5.608 21.467 1 34.49 ? C05 V0P 907 A 1 HETATM 5 C C06 V0P . . . H 7 5.674 6.203 21.504 1 41.56 ? C06 V0P 907 A 1 HETATM 6 C C07 V0P . . . H 7 5.783 7.591 22.064 1 41.6 ? C07 V0P 907 A 1 HETATM 7 C C09 V0P . . . H 7 7.815 8.405 23.117 1 47.28 ? C09 V0P 907 A 1 HETATM 8 C C10 V0P . . . H 7 8.311 9.846 23.366 1 39.6 ? C10 V0P 907 A 1 HETATM 9 C C12 V0P . . . H 7 9.467 11.195 21.671 1 49.93 ? C12 V0P 907 A 1 HETATM 10 C C13 V0P . . . H 7 10.432 11.292 20.663 1 54.32 ? C13 V0P 907 A 1 HETATM 11 C C14 V0P . . . H 7 10.401 12.416 19.829 1 50.03 ? C14 V0P 907 A 1 HETATM 12 C C15 V0P . . . H 7 9.443 13.44 19.971 1 50.59 ? C15 V0P 907 A 1 HETATM 13 C C16 V0P . . . H 7 8.487 13.332 20.983 1 50.39 ? C16 V0P 907 A 1 HETATM 14 C C18 V0P . . . H 7 6.692 14.288 22.39 1 34.38 ? C18 V0P 907 A 1 HETATM 15 C C19 V0P . . . H 7 5.609 15.416 22.49 1 37.93 ? C19 V0P 907 A 1 HETATM 16 C C20 V0P . . . H 7 5.305 16.3 21.419 1 34.93 ? C20 V0P 907 A 1 HETATM 17 C C21 V0P . . . H 7 4.318 17.303 21.551 1 33.14 ? C21 V0P 907 A 1 HETATM 18 C C22 V0P . . . H 7 3.585 17.454 22.776 1 31.35 ? C22 V0P 907 A 1 HETATM 19 C C23 V0P . . . H 7 2.573 18.451 22.969 1 28.59 ? C23 V0P 907 A 1 HETATM 20 C C24 V0P . . . H 7 1.909 18.531 24.206 1 29.5 ? C24 V0P 907 A 1 HETATM 21 C C25 V0P . . . H 7 2.285 17.576 25.233 1 26.9 ? C25 V0P 907 A 1 HETATM 22 C C28 V0P . . . H 7 3.862 16.596 23.829 1 34.7 ? C28 V0P 907 A 1 HETATM 23 C C29 V0P . . . H 7 4.874 15.602 23.658 1 37.21 ? C29 V0P 907 A 1 HETATM 24 C C30 V0P . . . H 7 8.495 12.205 21.839 1 51.94 ? C30 V0P 907 A 1 HETATM 25 N N01 V0P . . . H 7 7.79 3.636 20.08 1 50.9 ? N01 V0P 907 A 1 HETATM 26 N N08 V0P . . . H 7 7.097 8.171 21.867 1 45.15 ? N08 V0P 907 A 1 HETATM 27 N N26 V0P . . . H 7 1.65 17.612 26.502 1 28.64 ? N26 V0P 907 A 1 HETATM 28 N N27 V0P . . . H 7 3.215 16.649 25.054 1 32.02 ? N27 V0P 907 A 1 HETATM 29 N N31 V0P . . . H 7 6.792 5.577 21.057 1 40.85 ? N31 V0P 907 A 1 HETATM 30 O O11 V0P . . . H 7 9.453 10.09 22.539 1 52.63 ? O11 V0P 907 A 1 HETATM 31 O O17 V0P . . . H 7 7.483 14.32 21.186 1 45.61 ? O17 V0P 907 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 110 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #