data_6XD7 # _model_server_result.job_id gT5tIEH0RvXNCXM1DArxBA _model_server_result.datetime_utc '2024-11-30 00:14:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xd7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6XD7 # _exptl.entry_id 6XD7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.42 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XD7 _cell.length_a 56.83 _cell.length_b 59.38 _cell.length_c 77.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XD7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 68 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 69 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 237 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 238 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.094 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H21 N3 O5 S' _chem_comp.formula_weight 367.42 _chem_comp.id ZZ7 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(R)-{[(2R)-2-amino-2-phenylacetyl]amino}(carboxy)methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AMPICILLIN (open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 ZZ7 doub 389 n n C2 O2 ZZ7 sing 390 n n C2 C12 ZZ7 sing 391 n n C12 C6 ZZ7 sing 392 n n C12 N3 ZZ7 sing 393 n n C6 C1 ZZ7 sing 394 n n C6 C16 ZZ7 sing 395 n n C6 S1 ZZ7 sing 396 n n S1 C13 ZZ7 sing 397 n n N3 C13 ZZ7 sing 398 n n C13 C14 ZZ7 sing 399 n n C14 C15 ZZ7 sing 400 n n C14 N1 ZZ7 sing 401 n n C15 O4 ZZ7 doub 402 n n C15 OXT ZZ7 sing 403 n n N1 C3 ZZ7 sing 404 n n C3 O3 ZZ7 doub 405 n n C3 C4 ZZ7 sing 406 n n C4 N2 ZZ7 sing 407 n n C4 C5 ZZ7 sing 408 n n C5 C7 ZZ7 sing 409 n y C5 C11 ZZ7 doub 410 n y C7 C8 ZZ7 doub 411 n y C8 C9 ZZ7 sing 412 n y C9 C10 ZZ7 doub 413 n y C10 C11 ZZ7 sing 414 n y O2 H2 ZZ7 sing 415 n n C12 H12 ZZ7 sing 416 n n N3 H3 ZZ7 sing 417 n n C1 H11C ZZ7 sing 418 n n C1 H12C ZZ7 sing 419 n n C1 H13C ZZ7 sing 420 n n C16 H161 ZZ7 sing 421 n n C16 H162 ZZ7 sing 422 n n C16 H163 ZZ7 sing 423 n n C13 H13 ZZ7 sing 424 n n C14 H14 ZZ7 sing 425 n n N1 H1 ZZ7 sing 426 n n OXT HXT ZZ7 sing 427 n n C4 H4 ZZ7 sing 428 n n N2 H21N ZZ7 sing 429 n n N2 H22N ZZ7 sing 430 n n C7 H7 ZZ7 sing 431 n n C11 H11 ZZ7 sing 432 n n C8 H8 ZZ7 sing 433 n n C9 H9 ZZ7 sing 434 n n C10 H10 ZZ7 sing 435 n n # _atom_sites.entry_id 6XD7 _atom_sites.fract_transf_matrix[1][1] 0.017596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZZ7 A 1 301 301 ZZ7 ZZ7 . C 3 GOL A 1 302 302 GOL GOL . D 4 HOH A 1 401 128 HOH HOH . D 4 HOH A 2 402 10 HOH HOH . D 4 HOH A 3 403 78 HOH HOH . D 4 HOH A 4 404 94 HOH HOH . D 4 HOH A 5 405 15 HOH HOH . D 4 HOH A 6 406 70 HOH HOH . D 4 HOH A 7 407 120 HOH HOH . D 4 HOH A 8 408 88 HOH HOH . D 4 HOH A 9 409 115 HOH HOH . D 4 HOH A 10 410 59 HOH HOH . D 4 HOH A 11 411 22 HOH HOH . D 4 HOH A 12 412 28 HOH HOH . D 4 HOH A 13 413 17 HOH HOH . D 4 HOH A 14 414 114 HOH HOH . D 4 HOH A 15 415 97 HOH HOH . D 4 HOH A 16 416 58 HOH HOH . D 4 HOH A 17 417 13 HOH HOH . D 4 HOH A 18 418 21 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 45 HOH HOH . D 4 HOH A 21 421 49 HOH HOH . D 4 HOH A 22 422 18 HOH HOH . D 4 HOH A 23 423 16 HOH HOH . D 4 HOH A 24 424 131 HOH HOH . D 4 HOH A 25 425 2 HOH HOH . D 4 HOH A 26 426 125 HOH HOH . D 4 HOH A 27 427 136 HOH HOH . D 4 HOH A 28 428 29 HOH HOH . D 4 HOH A 29 429 60 HOH HOH . D 4 HOH A 30 430 108 HOH HOH . D 4 HOH A 31 431 50 HOH HOH . D 4 HOH A 32 432 12 HOH HOH . D 4 HOH A 33 433 103 HOH HOH . D 4 HOH A 34 434 107 HOH HOH . D 4 HOH A 35 435 20 HOH HOH . D 4 HOH A 36 436 139 HOH HOH . D 4 HOH A 37 437 53 HOH HOH . D 4 HOH A 38 438 85 HOH HOH . D 4 HOH A 39 439 3 HOH HOH . D 4 HOH A 40 440 105 HOH HOH . D 4 HOH A 41 441 38 HOH HOH . D 4 HOH A 42 442 75 HOH HOH . D 4 HOH A 43 443 93 HOH HOH . D 4 HOH A 44 444 34 HOH HOH . D 4 HOH A 45 445 46 HOH HOH . D 4 HOH A 46 446 8 HOH HOH . D 4 HOH A 47 447 83 HOH HOH . D 4 HOH A 48 448 7 HOH HOH . D 4 HOH A 49 449 76 HOH HOH . D 4 HOH A 50 450 79 HOH HOH . D 4 HOH A 51 451 119 HOH HOH . D 4 HOH A 52 452 36 HOH HOH . D 4 HOH A 53 453 96 HOH HOH . D 4 HOH A 54 454 149 HOH HOH . D 4 HOH A 55 455 71 HOH HOH . D 4 HOH A 56 456 104 HOH HOH . D 4 HOH A 57 457 69 HOH HOH . D 4 HOH A 58 458 5 HOH HOH . D 4 HOH A 59 459 86 HOH HOH . D 4 HOH A 60 460 1 HOH HOH . D 4 HOH A 61 461 54 HOH HOH . D 4 HOH A 62 462 41 HOH HOH . D 4 HOH A 63 463 47 HOH HOH . D 4 HOH A 64 464 39 HOH HOH . D 4 HOH A 65 465 4 HOH HOH . D 4 HOH A 66 466 106 HOH HOH . D 4 HOH A 67 467 68 HOH HOH . D 4 HOH A 68 468 11 HOH HOH . D 4 HOH A 69 469 87 HOH HOH . D 4 HOH A 70 470 82 HOH HOH . D 4 HOH A 71 471 31 HOH HOH . D 4 HOH A 72 472 72 HOH HOH . D 4 HOH A 73 473 40 HOH HOH . D 4 HOH A 74 474 91 HOH HOH . D 4 HOH A 75 475 37 HOH HOH . D 4 HOH A 76 476 95 HOH HOH . D 4 HOH A 77 477 138 HOH HOH . D 4 HOH A 78 478 126 HOH HOH . D 4 HOH A 79 479 57 HOH HOH . D 4 HOH A 80 480 64 HOH HOH . D 4 HOH A 81 481 33 HOH HOH . D 4 HOH A 82 482 35 HOH HOH . D 4 HOH A 83 483 122 HOH HOH . D 4 HOH A 84 484 24 HOH HOH . D 4 HOH A 85 485 109 HOH HOH . D 4 HOH A 86 486 51 HOH HOH . D 4 HOH A 87 487 9 HOH HOH . D 4 HOH A 88 488 55 HOH HOH . D 4 HOH A 89 489 27 HOH HOH . D 4 HOH A 90 490 124 HOH HOH . D 4 HOH A 91 491 44 HOH HOH . D 4 HOH A 92 492 42 HOH HOH . D 4 HOH A 93 493 121 HOH HOH . D 4 HOH A 94 494 66 HOH HOH . D 4 HOH A 95 495 61 HOH HOH . D 4 HOH A 96 496 65 HOH HOH . D 4 HOH A 97 497 81 HOH HOH . D 4 HOH A 98 498 14 HOH HOH . D 4 HOH A 99 499 48 HOH HOH . D 4 HOH A 100 500 56 HOH HOH . D 4 HOH A 101 501 67 HOH HOH . D 4 HOH A 102 502 63 HOH HOH . D 4 HOH A 103 503 73 HOH HOH . D 4 HOH A 104 504 99 HOH HOH . D 4 HOH A 105 505 133 HOH HOH . D 4 HOH A 106 506 23 HOH HOH . D 4 HOH A 107 507 62 HOH HOH . D 4 HOH A 108 508 43 HOH HOH . D 4 HOH A 109 509 74 HOH HOH . D 4 HOH A 110 510 123 HOH HOH . D 4 HOH A 111 511 52 HOH HOH . D 4 HOH A 112 512 129 HOH HOH . D 4 HOH A 113 513 84 HOH HOH . D 4 HOH A 114 514 137 HOH HOH . D 4 HOH A 115 515 130 HOH HOH . D 4 HOH A 116 516 134 HOH HOH . D 4 HOH A 117 517 117 HOH HOH . D 4 HOH A 118 518 77 HOH HOH . D 4 HOH A 119 519 127 HOH HOH . D 4 HOH A 120 520 32 HOH HOH . D 4 HOH A 121 521 90 HOH HOH . D 4 HOH A 122 522 112 HOH HOH . D 4 HOH A 123 523 140 HOH HOH . D 4 HOH A 124 524 111 HOH HOH . D 4 HOH A 125 525 102 HOH HOH . D 4 HOH A 126 526 147 HOH HOH . D 4 HOH A 127 527 101 HOH HOH . D 4 HOH A 128 528 26 HOH HOH . D 4 HOH A 129 529 145 HOH HOH . D 4 HOH A 130 530 132 HOH HOH . D 4 HOH A 131 531 141 HOH HOH . D 4 HOH A 132 532 80 HOH HOH . D 4 HOH A 133 533 25 HOH HOH . D 4 HOH A 134 534 89 HOH HOH . D 4 HOH A 135 535 110 HOH HOH . D 4 HOH A 136 536 142 HOH HOH . D 4 HOH A 137 537 148 HOH HOH . D 4 HOH A 138 538 144 HOH HOH . D 4 HOH A 139 539 135 HOH HOH . D 4 HOH A 140 540 6 HOH HOH . D 4 HOH A 141 541 92 HOH HOH . D 4 HOH A 142 542 146 HOH HOH . D 4 HOH A 143 543 143 HOH HOH . D 4 HOH A 144 544 113 HOH HOH . D 4 HOH A 145 545 98 HOH HOH . D 4 HOH A 146 546 116 HOH HOH . D 4 HOH A 147 547 118 HOH HOH . D 4 HOH A 148 548 100 HOH HOH . D 4 HOH A 149 549 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 ZZ7 . . . B 2 20.473 17.423 8.993 0.87 30.32 ? O1 ZZ7 301 A 1 HETATM 2 C C2 ZZ7 . . . B 2 20.609 16.25 9.443 0.87 29.66 ? C2 ZZ7 301 A 1 HETATM 3 O O2 ZZ7 . . . B 2 20.092 15.884 10.528 0.87 30.54 ? O2 ZZ7 301 A 1 HETATM 4 C C12 ZZ7 . . . B 2 21.363 15.249 8.713 0.87 27.62 ? C12 ZZ7 301 A 1 HETATM 5 C C6 ZZ7 . . . B 2 22.954 15.72 8.517 0.87 28.24 ? C6 ZZ7 301 A 1 HETATM 6 C C1 ZZ7 . . . B 2 23.541 16.248 9.823 0.87 30.02 ? C1 ZZ7 301 A 1 HETATM 7 C C16 ZZ7 . . . B 2 23.094 16.768 7.417 0.87 27.16 ? C16 ZZ7 301 A 1 HETATM 8 S S1 ZZ7 . . . B 2 23.76 14.142 8.002 0.87 26.33 ? S1 ZZ7 301 A 1 HETATM 9 N N3 ZZ7 . . . B 2 21.4 14.073 9.582 0.87 28.8 ? N3 ZZ7 301 A 1 HETATM 10 C C13 ZZ7 . . . B 2 22.87 13.15 9.268 0.87 29.19 ? C13 ZZ7 301 A 1 HETATM 11 C C14 ZZ7 . . . B 2 22.413 11.763 8.739 0.87 29.6 ? C14 ZZ7 301 A 1 HETATM 12 C C15 ZZ7 . . . B 2 21.443 11.276 9.788 0.87 29.82 ? C15 ZZ7 301 A 1 HETATM 13 O O4 ZZ7 . . . B 2 20.208 11.466 9.653 0.87 30.39 ? O4 ZZ7 301 A 1 HETATM 14 N N1 ZZ7 . . . B 2 21.784 11.943 7.439 0.87 28.63 ? N1 ZZ7 301 A 1 HETATM 15 C C3 ZZ7 . . . B 2 22.444 11.646 6.31 0.87 29.44 ? C3 ZZ7 301 A 1 HETATM 16 O O3 ZZ7 . . . B 2 23.591 11.196 6.305 0.87 29.75 ? O3 ZZ7 301 A 1 HETATM 17 C C4 ZZ7 . . . B 2 21.687 11.888 4.997 0.87 30.33 ? C4 ZZ7 301 A 1 HETATM 18 N N2 ZZ7 . . . B 2 22.352 11.129 3.952 0.87 35.07 ? N2 ZZ7 301 A 1 HETATM 19 C C5 ZZ7 . . . B 2 21.655 13.386 4.665 0.87 29.27 ? C5 ZZ7 301 A 1 HETATM 20 C C7 ZZ7 . . . B 2 22.82 14.083 4.352 0.87 30.55 ? C7 ZZ7 301 A 1 HETATM 21 C C8 ZZ7 . . . B 2 22.748 15.437 4.056 0.87 30.01 ? C8 ZZ7 301 A 1 HETATM 22 C C9 ZZ7 . . . B 2 21.529 16.104 4.071 0.87 31.42 ? C9 ZZ7 301 A 1 HETATM 23 C C10 ZZ7 . . . B 2 20.371 15.412 4.386 0.87 29.73 ? C10 ZZ7 301 A 1 HETATM 24 C C11 ZZ7 . . . B 2 20.443 14.059 4.681 0.87 29.62 ? C11 ZZ7 301 A 1 HETATM 25 O OXT ZZ7 . . . B 2 21.879 10.708 10.817 0.87 30.38 ? OXT ZZ7 301 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #