data_6XDF
#
_model_server_result.job_id            Fsz-PCafvZUEVNO_Yakl4A 
_model_server_result.datetime_utc      '2024-10-19 22:24:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xdf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    6XDF 
#
_exptl.entry_id    6XDF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          129.73 
_cell.angle_gamma         90 
_cell.entry_id            6XDF 
_cell.length_a            166.919 
_cell.length_b            72.767 
_cell.length_c            120.054 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XDF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,C,D,F 2 1 
B,E,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O HIS 76 A HIS 622 1_555 C NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? 
metalc ? metalc2 A O VAL 79 A VAL 625 1_555 C NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
metalc ? metalc3 C NA NA . A NA 1001 1_555 F O HOH . A HOH 1150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc4 B O ASP 74 B ASP 620 1_555 E NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
metalc ? metalc5 B O HIS 76 B HIS 622 1_555 E NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc6 B O VAL 79 B VAL 625 1_555 E NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6XDF 
_atom_sites.fract_transf_matrix[1][1]    0.005991 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004979 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013742 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01083 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 1001 2 NA NA . 
D 3 N94 A 1 1002 1 N94 INX . 
E 2 NA B 1 1001 1 NA NA . 
F 4 HOH A 1 1101 90 HOH HOH . 
F 4 HOH A 2 1102 74 HOH HOH . 
F 4 HOH A 3 1103 14 HOH HOH . 
F 4 HOH A 4 1104 42 HOH HOH . 
F 4 HOH A 5 1105 31 HOH HOH . 
F 4 HOH A 6 1106 194 HOH HOH . 
F 4 HOH A 7 1107 129 HOH HOH . 
F 4 HOH A 8 1108 48 HOH HOH . 
F 4 HOH A 9 1109 228 HOH HOH . 
F 4 HOH A 10 1110 21 HOH HOH . 
F 4 HOH A 11 1111 190 HOH HOH . 
F 4 HOH A 12 1112 193 HOH HOH . 
F 4 HOH A 13 1113 185 HOH HOH . 
F 4 HOH A 14 1114 140 HOH HOH . 
F 4 HOH A 15 1115 209 HOH HOH . 
F 4 HOH A 16 1116 111 HOH HOH . 
F 4 HOH A 17 1117 225 HOH HOH . 
F 4 HOH A 18 1118 85 HOH HOH . 
F 4 HOH A 19 1119 137 HOH HOH . 
F 4 HOH A 20 1120 22 HOH HOH . 
F 4 HOH A 21 1121 75 HOH HOH . 
F 4 HOH A 22 1122 166 HOH HOH . 
F 4 HOH A 23 1123 35 HOH HOH . 
F 4 HOH A 24 1124 47 HOH HOH . 
F 4 HOH A 25 1125 54 HOH HOH . 
F 4 HOH A 26 1126 8 HOH HOH . 
F 4 HOH A 27 1127 224 HOH HOH . 
F 4 HOH A 28 1128 241 HOH HOH . 
F 4 HOH A 29 1129 139 HOH HOH . 
F 4 HOH A 30 1130 73 HOH HOH . 
F 4 HOH A 31 1131 95 HOH HOH . 
F 4 HOH A 32 1132 86 HOH HOH . 
F 4 HOH A 33 1133 151 HOH HOH . 
F 4 HOH A 34 1134 231 HOH HOH . 
F 4 HOH A 35 1135 157 HOH HOH . 
F 4 HOH A 36 1136 132 HOH HOH . 
F 4 HOH A 37 1137 11 HOH HOH . 
F 4 HOH A 38 1138 236 HOH HOH . 
F 4 HOH A 39 1139 239 HOH HOH . 
F 4 HOH A 40 1140 3 HOH HOH . 
F 4 HOH A 41 1141 105 HOH HOH . 
F 4 HOH A 42 1142 155 HOH HOH . 
F 4 HOH A 43 1143 192 HOH HOH . 
F 4 HOH A 44 1144 110 HOH HOH . 
F 4 HOH A 45 1145 210 HOH HOH . 
F 4 HOH A 46 1146 9 HOH HOH . 
F 4 HOH A 47 1147 23 HOH HOH . 
F 4 HOH A 48 1148 66 HOH HOH . 
F 4 HOH A 49 1149 238 HOH HOH . 
F 4 HOH A 50 1150 237 HOH HOH . 
F 4 HOH A 51 1151 34 HOH HOH . 
F 4 HOH A 52 1152 234 HOH HOH . 
F 4 HOH A 53 1153 46 HOH HOH . 
F 4 HOH A 54 1154 232 HOH HOH . 
F 4 HOH A 55 1155 161 HOH HOH . 
F 4 HOH A 56 1156 38 HOH HOH . 
F 4 HOH A 57 1157 230 HOH HOH . 
F 4 HOH A 58 1158 131 HOH HOH . 
F 4 HOH A 59 1159 2 HOH HOH . 
F 4 HOH A 60 1160 218 HOH HOH . 
F 4 HOH A 61 1161 134 HOH HOH . 
F 4 HOH A 62 1162 240 HOH HOH . 
F 4 HOH A 63 1163 229 HOH HOH . 
F 4 HOH A 64 1164 180 HOH HOH . 
F 4 HOH A 65 1165 43 HOH HOH . 
F 4 HOH A 66 1166 32 HOH HOH . 
F 4 HOH A 67 1167 127 HOH HOH . 
F 4 HOH A 68 1168 4 HOH HOH . 
F 4 HOH A 69 1169 213 HOH HOH . 
F 4 HOH A 70 1170 164 HOH HOH . 
F 4 HOH A 71 1171 233 HOH HOH . 
F 4 HOH A 72 1172 211 HOH HOH . 
G 4 HOH B 1 1101 84 HOH HOH . 
G 4 HOH B 2 1102 171 HOH HOH . 
G 4 HOH B 3 1103 242 HOH HOH . 
G 4 HOH B 4 1104 116 HOH HOH . 
G 4 HOH B 5 1105 36 HOH HOH . 
G 4 HOH B 6 1106 153 HOH HOH . 
G 4 HOH B 7 1107 79 HOH HOH . 
G 4 HOH B 8 1108 91 HOH HOH . 
G 4 HOH B 9 1109 204 HOH HOH . 
G 4 HOH B 10 1110 40 HOH HOH . 
G 4 HOH B 11 1111 96 HOH HOH . 
G 4 HOH B 12 1112 76 HOH HOH . 
G 4 HOH B 13 1113 18 HOH HOH . 
G 4 HOH B 14 1114 145 HOH HOH . 
G 4 HOH B 15 1115 26 HOH HOH . 
G 4 HOH B 16 1116 44 HOH HOH . 
G 4 HOH B 17 1117 220 HOH HOH . 
G 4 HOH B 18 1118 7 HOH HOH . 
G 4 HOH B 19 1119 58 HOH HOH . 
G 4 HOH B 20 1120 219 HOH HOH . 
G 4 HOH B 21 1121 223 HOH HOH . 
G 4 HOH B 22 1122 168 HOH HOH . 
G 4 HOH B 23 1123 138 HOH HOH . 
G 4 HOH B 24 1124 118 HOH HOH . 
G 4 HOH B 25 1125 206 HOH HOH . 
G 4 HOH B 26 1126 128 HOH HOH . 
G 4 HOH B 27 1127 120 HOH HOH . 
G 4 HOH B 28 1128 221 HOH HOH . 
G 4 HOH B 29 1129 50 HOH HOH . 
G 4 HOH B 30 1130 115 HOH HOH . 
G 4 HOH B 31 1131 227 HOH HOH . 
G 4 HOH B 32 1132 136 HOH HOH . 
G 4 HOH B 33 1133 39 HOH HOH . 
G 4 HOH B 34 1134 235 HOH HOH . 
G 4 HOH B 35 1135 125 HOH HOH . 
G 4 HOH B 36 1136 186 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               15.168 
_atom_site.Cartn_y               -9.276 
_atom_site.Cartn_z               31.88 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        79.07 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#