data_6XE6
#
_model_server_result.job_id            duD-5X4pab-RB8juDrzJyQ 
_model_server_result.datetime_utc      '2025-08-31 07:39:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xe6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1305}' 
#
_entry.id    6XE6 
#
_exptl.entry_id    6XE6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XE6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XE6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             162 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              323 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             206 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              367 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.039 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 404 n n 
CBA CAB Y01 sing 405 n n 
CBA CAN Y01 sing 406 n n 
CAN CAJ Y01 sing 407 n n 
CAJ CAO Y01 sing 408 n n 
CAO CBB Y01 sing 409 n n 
CBB CAC Y01 sing 410 n n 
CBB CBE Y01 sing 411 n n 
CBE CAP Y01 sing 412 n n 
CBE CBI Y01 sing 413 n n 
CAP CAQ Y01 sing 414 n n 
CAQ CBG Y01 sing 415 n n 
CBG CBI Y01 sing 416 n n 
CBG CBD Y01 sing 417 n n 
CBI CAE Y01 sing 418 n n 
CBI CAU Y01 sing 419 n n 
CAU CAS Y01 sing 420 n n 
CAS CBF Y01 sing 421 n n 
CBF CBD Y01 sing 422 n n 
CBF CBH Y01 sing 423 n n 
CBD CAK Y01 sing 424 n n 
CAK CAI Y01 sing 425 n n 
CAI CAZ Y01 doub 426 n n 
CAZ CAV Y01 sing 427 n n 
CAZ CBH Y01 sing 428 n n 
CAV CBC Y01 sing 429 n n 
CBH CAD Y01 sing 430 n n 
CBH CAT Y01 sing 431 n n 
CAT CAR Y01 sing 432 n n 
CAR CBC Y01 sing 433 n n 
CBC OAW Y01 sing 434 n n 
OAW CAY Y01 sing 435 n n 
CAY OAG Y01 doub 436 n n 
CAY CAM Y01 sing 437 n n 
CAM CAL Y01 sing 438 n n 
CAL CAX Y01 sing 439 n n 
CAX OAH Y01 sing 440 n n 
CAX OAF Y01 doub 441 n n 
CAA HAA1 Y01 sing 442 n n 
CAA HAA2 Y01 sing 443 n n 
CAA HAA3 Y01 sing 444 n n 
CBA HBA Y01 sing 445 n n 
CAB HAB1 Y01 sing 446 n n 
CAB HAB2 Y01 sing 447 n n 
CAB HAB3 Y01 sing 448 n n 
CAN HAN1 Y01 sing 449 n n 
CAN HAN2 Y01 sing 450 n n 
CAJ HAJ1 Y01 sing 451 n n 
CAJ HAJ2 Y01 sing 452 n n 
CAO HAO1 Y01 sing 453 n n 
CAO HAO2 Y01 sing 454 n n 
CBB HBB Y01 sing 455 n n 
CAC HAC1 Y01 sing 456 n n 
CAC HAC2 Y01 sing 457 n n 
CAC HAC3 Y01 sing 458 n n 
CBE HBE Y01 sing 459 n n 
CAP HAP1 Y01 sing 460 n n 
CAP HAP2 Y01 sing 461 n n 
CAQ HAQ1 Y01 sing 462 n n 
CAQ HAQ2 Y01 sing 463 n n 
CBG HBG Y01 sing 464 n n 
CBD HBD Y01 sing 465 n n 
CAE HAE1 Y01 sing 466 n n 
CAE HAE2 Y01 sing 467 n n 
CAE HAE3 Y01 sing 468 n n 
CAU HAU1 Y01 sing 469 n n 
CAU HAU2 Y01 sing 470 n n 
CAS HAS1 Y01 sing 471 n n 
CAS HAS2 Y01 sing 472 n n 
CBF HBF Y01 sing 473 n n 
CAK HAK1 Y01 sing 474 n n 
CAK HAK2 Y01 sing 475 n n 
CAI HAI Y01 sing 476 n n 
CAV HAV1 Y01 sing 477 n n 
CAV HAV2 Y01 sing 478 n n 
CBC HBC Y01 sing 479 n n 
CAD HAD1 Y01 sing 480 n n 
CAD HAD2 Y01 sing 481 n n 
CAD HAD3 Y01 sing 482 n n 
CAT HAT1 Y01 sing 483 n n 
CAT HAT2 Y01 sing 484 n n 
CAR HAR1 Y01 sing 485 n n 
CAR HAR2 Y01 sing 486 n n 
CAM HAM1 Y01 sing 487 n n 
CAM HAM2 Y01 sing 488 n n 
CAL HAL1 Y01 sing 489 n n 
CAL HAL2 Y01 sing 490 n n 
OAH HAH Y01 sing 491 n n 
#
_atom_sites.entry_id                     6XE6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 Y01 A 1 1301 1203 Y01 Y01 . 
C 2 Y01 A 1 1302 1204 Y01 Y01 . 
D 2 Y01 A 1 1303 1205 Y01 Y01 . 
E 2 Y01 A 1 1304 1206 Y01 Y01 . 
F 2 Y01 A 1 1305 1207 Y01 Y01 . 
G 3 NAG A 1 1306 1208 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . F 2 113.821 96.09 105.104 1 132.69 ? CAA Y01 1305 A 1 
HETATM 2 C CBA Y01 . . . F 2 113.341 97.057 104.007 1 133.15 ? CBA Y01 1305 A 1 
HETATM 3 C CAB Y01 . . . F 2 112.059 97.809 104.398 1 132.8 ? CAB Y01 1305 A 1 
HETATM 4 C CAN Y01 . . . F 2 113.202 96.35 102.646 1 134.76 ? CAN Y01 1305 A 1 
HETATM 5 C CAJ Y01 . . . F 2 112.138 95.24 102.578 1 137.13 ? CAJ Y01 1305 A 1 
HETATM 6 C CAO Y01 . . . F 2 112.679 93.802 102.634 1 140.97 ? CAO Y01 1305 A 1 
HETATM 7 C CBB Y01 . . . F 2 111.798 92.761 101.884 1 146.06 ? CBB Y01 1305 A 1 
HETATM 8 C CAC Y01 . . . F 2 110.383 92.741 102.505 1 144.96 ? CAC Y01 1305 A 1 
HETATM 9 C CBE Y01 . . . F 2 111.72 92.884 100.308 1 152.68 ? CBE Y01 1305 A 1 
HETATM 10 C CAP Y01 . . . F 2 112.855 93.744 99.667 1 154.25 ? CAP Y01 1305 A 1 
HETATM 11 C CAQ Y01 . . . F 2 113.33 93.031 98.378 1 156.11 ? CAQ Y01 1305 A 1 
HETATM 12 C CBG Y01 . . . F 2 112.16 92.096 98.064 1 158.72 ? CBG Y01 1305 A 1 
HETATM 13 C CBI Y01 . . . F 2 111.772 91.565 99.488 1 157.73 ? CBI Y01 1305 A 1 
HETATM 14 C CAE Y01 . . . F 2 112.805 90.541 100.042 1 158.7 ? CAE Y01 1305 A 1 
HETATM 15 C CAU Y01 . . . F 2 110.42 90.886 99.27 1 160.23 ? CAU Y01 1305 A 1 
HETATM 16 C CAS Y01 . . . F 2 110.458 89.778 98.188 1 161.9 ? CAS Y01 1305 A 1 
HETATM 17 C CBF Y01 . . . F 2 111.161 90.15 96.863 1 163.81 ? CBF Y01 1305 A 1 
HETATM 18 C CBD Y01 . . . F 2 112.454 90.972 97.066 1 162.24 ? CBD Y01 1305 A 1 
HETATM 19 C CAK Y01 . . . F 2 112.854 91.589 95.713 1 164 ? CAK Y01 1305 A 1 
HETATM 20 C CAI Y01 . . . F 2 112.879 90.522 94.648 1 165.42 ? CAI Y01 1305 A 1 
HETATM 21 C CAZ Y01 . . . F 2 112.145 89.433 94.683 1 167.09 ? CAZ Y01 1305 A 1 
HETATM 22 C CAV Y01 . . . F 2 112.139 88.529 93.454 1 167.49 ? CAV Y01 1305 A 1 
HETATM 23 C CBH Y01 . . . F 2 111.416 88.959 95.92 1 166.84 ? CBH Y01 1305 A 1 
HETATM 24 C CAD Y01 . . . F 2 112.311 87.869 96.566 1 167.63 ? CAD Y01 1305 A 1 
HETATM 25 C CAT Y01 . . . F 2 110.06 88.318 95.543 1 168.06 ? CAT Y01 1305 A 1 
HETATM 26 C CAR Y01 . . . F 2 110.122 87.384 94.323 1 168.5 ? CAR Y01 1305 A 1 
HETATM 27 C CBC Y01 . . . F 2 110.694 88.147 93.13 1 168.1 ? CBC Y01 1305 A 1 
HETATM 28 O OAW Y01 . . . F 2 110.706 87.307 91.946 1 167.66 ? OAW Y01 1305 A 1 
HETATM 29 C CAY Y01 . . . F 2 110.059 87.676 90.825 1 167.59 ? CAY Y01 1305 A 1 
HETATM 30 O OAG Y01 . . . F 2 109.927 88.836 90.495 1 167.19 ? OAG Y01 1305 A 1 
HETATM 31 C CAM Y01 . . . F 2 109.498 86.576 89.962 1 167.88 ? CAM Y01 1305 A 1 
HETATM 32 C CAL Y01 . . . F 2 110.567 85.967 89.039 1 168.89 ? CAL Y01 1305 A 1 
HETATM 33 C CAX Y01 . . . F 2 111.443 87.009 88.382 1 170.29 ? CAX Y01 1305 A 1 
HETATM 34 O OAH Y01 . . . F 2 110.885 87.973 87.63 1 171.21 ? OAH Y01 1305 A 1 
HETATM 35 O OAF Y01 . . . F 2 112.642 86.975 88.532 1 171.76 ? OAF Y01 1305 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           411 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#