data_6XED # _model_server_result.job_id 0RJ1M_At2u4hTHbwCBDyZg _model_server_result.datetime_utc '2024-11-16 07:55:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xed # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 6XED # _exptl.entry_id 6XED _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XED _cell.length_a 88.871 _cell.length_b 88.871 _cell.length_c 104.351 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XED _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 2 A GLU 2 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? metalc ? metalc2 A OE1 GLU 6 A GLU 6 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 A OG1 THR 165 A THR 165 1_555 I MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc4 A OE1 GLU 167 A GLU 167 1_555 I MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc5 A OD1 ASP 181 A ASP 181 1_555 G MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc6 A OD2 ASP 265 A ASP 265 1_555 F MG MG . A MG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc7 G MG MG . A MG 406 1_555 J O HOH . A HOH 774 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc8 H MG MG . A MG 407 1_555 J O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc9 I MG MG . A MG 408 1_555 J O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XED _atom_sites.fract_transf_matrix[1][1] 0.011252 _atom_sites.fract_transf_matrix[1][2] 0.006496 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WO4 A 1 401 1 WO4 WO4 . C 3 BEN A 1 402 2 BEN BEN . D 4 TRS A 1 403 3 TRS TRS . E 3 BEN A 1 404 4 BEN BEN . F 5 MG A 1 405 5 MG MG . G 5 MG A 1 406 6 MG MG . H 5 MG A 1 407 7 MG MG . I 5 MG A 1 408 8 MG MG . J 6 HOH A 1 501 179 HOH HOH . J 6 HOH A 2 502 129 HOH HOH . J 6 HOH A 3 503 268 HOH HOH . J 6 HOH A 4 504 249 HOH HOH . J 6 HOH A 5 505 175 HOH HOH . J 6 HOH A 6 506 199 HOH HOH . J 6 HOH A 7 507 217 HOH HOH . J 6 HOH A 8 508 88 HOH HOH . J 6 HOH A 9 509 47 HOH HOH . J 6 HOH A 10 510 138 HOH HOH . J 6 HOH A 11 511 149 HOH HOH . J 6 HOH A 12 512 203 HOH HOH . J 6 HOH A 13 513 141 HOH HOH . J 6 HOH A 14 514 12 HOH HOH . J 6 HOH A 15 515 31 HOH HOH . J 6 HOH A 16 516 34 HOH HOH . J 6 HOH A 17 517 14 HOH HOH . J 6 HOH A 18 518 83 HOH HOH . J 6 HOH A 19 519 187 HOH HOH . J 6 HOH A 20 520 196 HOH HOH . J 6 HOH A 21 521 230 HOH HOH . J 6 HOH A 22 522 123 HOH HOH . J 6 HOH A 23 523 96 HOH HOH . J 6 HOH A 24 524 195 HOH HOH . J 6 HOH A 25 525 36 HOH HOH . J 6 HOH A 26 526 288 HOH HOH . J 6 HOH A 27 527 67 HOH HOH . J 6 HOH A 28 528 267 HOH HOH . J 6 HOH A 29 529 29 HOH HOH . J 6 HOH A 30 530 8 HOH HOH . J 6 HOH A 31 531 38 HOH HOH . J 6 HOH A 32 532 191 HOH HOH . J 6 HOH A 33 533 214 HOH HOH . J 6 HOH A 34 534 98 HOH HOH . J 6 HOH A 35 535 64 HOH HOH . J 6 HOH A 36 536 84 HOH HOH . J 6 HOH A 37 537 135 HOH HOH . J 6 HOH A 38 538 62 HOH HOH . J 6 HOH A 39 539 27 HOH HOH . J 6 HOH A 40 540 60 HOH HOH . J 6 HOH A 41 541 49 HOH HOH . J 6 HOH A 42 542 290 HOH HOH . J 6 HOH A 43 543 127 HOH HOH . J 6 HOH A 44 544 158 HOH HOH . J 6 HOH A 45 545 26 HOH HOH . J 6 HOH A 46 546 95 HOH HOH . J 6 HOH A 47 547 232 HOH HOH . J 6 HOH A 48 548 193 HOH HOH . J 6 HOH A 49 549 13 HOH HOH . J 6 HOH A 50 550 6 HOH HOH . J 6 HOH A 51 551 164 HOH HOH . J 6 HOH A 52 552 5 HOH HOH . J 6 HOH A 53 553 94 HOH HOH . J 6 HOH A 54 554 55 HOH HOH . J 6 HOH A 55 555 71 HOH HOH . J 6 HOH A 56 556 161 HOH HOH . J 6 HOH A 57 557 50 HOH HOH . J 6 HOH A 58 558 57 HOH HOH . J 6 HOH A 59 559 59 HOH HOH . J 6 HOH A 60 560 166 HOH HOH . J 6 HOH A 61 561 24 HOH HOH . J 6 HOH A 62 562 280 HOH HOH . J 6 HOH A 63 563 233 HOH HOH . J 6 HOH A 64 564 121 HOH HOH . J 6 HOH A 65 565 190 HOH HOH . J 6 HOH A 66 566 111 HOH HOH . J 6 HOH A 67 567 17 HOH HOH . J 6 HOH A 68 568 241 HOH HOH . J 6 HOH A 69 569 99 HOH HOH . J 6 HOH A 70 570 254 HOH HOH . J 6 HOH A 71 571 176 HOH HOH . J 6 HOH A 72 572 200 HOH HOH . J 6 HOH A 73 573 77 HOH HOH . J 6 HOH A 74 574 245 HOH HOH . J 6 HOH A 75 575 266 HOH HOH . J 6 HOH A 76 576 43 HOH HOH . J 6 HOH A 77 577 201 HOH HOH . J 6 HOH A 78 578 63 HOH HOH . J 6 HOH A 79 579 192 HOH HOH . J 6 HOH A 80 580 80 HOH HOH . J 6 HOH A 81 581 40 HOH HOH . J 6 HOH A 82 582 93 HOH HOH . J 6 HOH A 83 583 248 HOH HOH . J 6 HOH A 84 584 41 HOH HOH . J 6 HOH A 85 585 90 HOH HOH . J 6 HOH A 86 586 9 HOH HOH . J 6 HOH A 87 587 146 HOH HOH . J 6 HOH A 88 588 23 HOH HOH . J 6 HOH A 89 589 185 HOH HOH . J 6 HOH A 90 590 25 HOH HOH . J 6 HOH A 91 591 18 HOH HOH . J 6 HOH A 92 592 228 HOH HOH . J 6 HOH A 93 593 37 HOH HOH . J 6 HOH A 94 594 237 HOH HOH . J 6 HOH A 95 595 131 HOH HOH . J 6 HOH A 96 596 194 HOH HOH . J 6 HOH A 97 597 281 HOH HOH . J 6 HOH A 98 598 79 HOH HOH . J 6 HOH A 99 599 15 HOH HOH . J 6 HOH A 100 600 212 HOH HOH . J 6 HOH A 101 601 74 HOH HOH . J 6 HOH A 102 602 250 HOH HOH . J 6 HOH A 103 603 286 HOH HOH . J 6 HOH A 104 604 11 HOH HOH . J 6 HOH A 105 605 4 HOH HOH . J 6 HOH A 106 606 224 HOH HOH . J 6 HOH A 107 607 133 HOH HOH . J 6 HOH A 108 608 10 HOH HOH . J 6 HOH A 109 609 54 HOH HOH . J 6 HOH A 110 610 69 HOH HOH . J 6 HOH A 111 611 108 HOH HOH . J 6 HOH A 112 612 186 HOH HOH . J 6 HOH A 113 613 213 HOH HOH . J 6 HOH A 114 614 287 HOH HOH . J 6 HOH A 115 615 56 HOH HOH . J 6 HOH A 116 616 21 HOH HOH . J 6 HOH A 117 617 279 HOH HOH . J 6 HOH A 118 618 265 HOH HOH . J 6 HOH A 119 619 82 HOH HOH . J 6 HOH A 120 620 244 HOH HOH . J 6 HOH A 121 621 198 HOH HOH . J 6 HOH A 122 622 53 HOH HOH . J 6 HOH A 123 623 225 HOH HOH . J 6 HOH A 124 624 20 HOH HOH . J 6 HOH A 125 625 42 HOH HOH . J 6 HOH A 126 626 162 HOH HOH . J 6 HOH A 127 627 28 HOH HOH . J 6 HOH A 128 628 22 HOH HOH . J 6 HOH A 129 629 207 HOH HOH . J 6 HOH A 130 630 65 HOH HOH . J 6 HOH A 131 631 114 HOH HOH . J 6 HOH A 132 632 112 HOH HOH . J 6 HOH A 133 633 154 HOH HOH . J 6 HOH A 134 634 216 HOH HOH . J 6 HOH A 135 635 183 HOH HOH . J 6 HOH A 136 636 3 HOH HOH . J 6 HOH A 137 637 120 HOH HOH . J 6 HOH A 138 638 35 HOH HOH . J 6 HOH A 139 639 243 HOH HOH . J 6 HOH A 140 640 30 HOH HOH . J 6 HOH A 141 641 251 HOH HOH . J 6 HOH A 142 642 7 HOH HOH . J 6 HOH A 143 643 66 HOH HOH . J 6 HOH A 144 644 144 HOH HOH . J 6 HOH A 145 645 227 HOH HOH . J 6 HOH A 146 646 16 HOH HOH . J 6 HOH A 147 647 70 HOH HOH . J 6 HOH A 148 648 174 HOH HOH . J 6 HOH A 149 649 87 HOH HOH . J 6 HOH A 150 650 167 HOH HOH . J 6 HOH A 151 651 33 HOH HOH . J 6 HOH A 152 652 252 HOH HOH . J 6 HOH A 153 653 81 HOH HOH . J 6 HOH A 154 654 153 HOH HOH . J 6 HOH A 155 655 260 HOH HOH . J 6 HOH A 156 656 19 HOH HOH . J 6 HOH A 157 657 130 HOH HOH . J 6 HOH A 158 658 72 HOH HOH . J 6 HOH A 159 659 219 HOH HOH . J 6 HOH A 160 660 263 HOH HOH . J 6 HOH A 161 661 32 HOH HOH . J 6 HOH A 162 662 204 HOH HOH . J 6 HOH A 163 663 75 HOH HOH . J 6 HOH A 164 664 165 HOH HOH . J 6 HOH A 165 665 160 HOH HOH . J 6 HOH A 166 666 257 HOH HOH . J 6 HOH A 167 667 177 HOH HOH . J 6 HOH A 168 668 189 HOH HOH . J 6 HOH A 169 669 51 HOH HOH . J 6 HOH A 170 670 48 HOH HOH . J 6 HOH A 171 671 137 HOH HOH . J 6 HOH A 172 672 278 HOH HOH . J 6 HOH A 173 673 218 HOH HOH . J 6 HOH A 174 674 73 HOH HOH . J 6 HOH A 175 675 58 HOH HOH . J 6 HOH A 176 676 68 HOH HOH . J 6 HOH A 177 677 184 HOH HOH . J 6 HOH A 178 678 271 HOH HOH . J 6 HOH A 179 679 44 HOH HOH . J 6 HOH A 180 680 100 HOH HOH . J 6 HOH A 181 681 2 HOH HOH . J 6 HOH A 182 682 215 HOH HOH . J 6 HOH A 183 683 128 HOH HOH . J 6 HOH A 184 684 178 HOH HOH . J 6 HOH A 185 685 1 HOH HOH . J 6 HOH A 186 686 85 HOH HOH . J 6 HOH A 187 687 61 HOH HOH . J 6 HOH A 188 688 221 HOH HOH . J 6 HOH A 189 689 151 HOH HOH . J 6 HOH A 190 690 156 HOH HOH . J 6 HOH A 191 691 46 HOH HOH . J 6 HOH A 192 692 202 HOH HOH . J 6 HOH A 193 693 255 HOH HOH . J 6 HOH A 194 694 52 HOH HOH . J 6 HOH A 195 695 226 HOH HOH . J 6 HOH A 196 696 115 HOH HOH . J 6 HOH A 197 697 134 HOH HOH . J 6 HOH A 198 698 284 HOH HOH . J 6 HOH A 199 699 39 HOH HOH . J 6 HOH A 200 700 205 HOH HOH . J 6 HOH A 201 701 229 HOH HOH . J 6 HOH A 202 702 172 HOH HOH . J 6 HOH A 203 703 210 HOH HOH . J 6 HOH A 204 704 182 HOH HOH . J 6 HOH A 205 705 234 HOH HOH . J 6 HOH A 206 706 222 HOH HOH . J 6 HOH A 207 707 283 HOH HOH . J 6 HOH A 208 708 277 HOH HOH . J 6 HOH A 209 709 78 HOH HOH . J 6 HOH A 210 710 253 HOH HOH . J 6 HOH A 211 711 110 HOH HOH . J 6 HOH A 212 712 289 HOH HOH . J 6 HOH A 213 713 109 HOH HOH . J 6 HOH A 214 714 269 HOH HOH . J 6 HOH A 215 715 124 HOH HOH . J 6 HOH A 216 716 113 HOH HOH . J 6 HOH A 217 717 181 HOH HOH . J 6 HOH A 218 718 275 HOH HOH . J 6 HOH A 219 719 285 HOH HOH . J 6 HOH A 220 720 118 HOH HOH . J 6 HOH A 221 721 256 HOH HOH . J 6 HOH A 222 722 168 HOH HOH . J 6 HOH A 223 723 258 HOH HOH . J 6 HOH A 224 724 89 HOH HOH . J 6 HOH A 225 725 276 HOH HOH . J 6 HOH A 226 726 117 HOH HOH . J 6 HOH A 227 727 132 HOH HOH . J 6 HOH A 228 728 91 HOH HOH . J 6 HOH A 229 729 116 HOH HOH . J 6 HOH A 230 730 240 HOH HOH . J 6 HOH A 231 731 264 HOH HOH . J 6 HOH A 232 732 139 HOH HOH . J 6 HOH A 233 733 45 HOH HOH . J 6 HOH A 234 734 173 HOH HOH . J 6 HOH A 235 735 274 HOH HOH . J 6 HOH A 236 736 103 HOH HOH . J 6 HOH A 237 737 247 HOH HOH . J 6 HOH A 238 738 242 HOH HOH . J 6 HOH A 239 739 147 HOH HOH . J 6 HOH A 240 740 101 HOH HOH . J 6 HOH A 241 741 282 HOH HOH . J 6 HOH A 242 742 148 HOH HOH . J 6 HOH A 243 743 145 HOH HOH . J 6 HOH A 244 744 209 HOH HOH . J 6 HOH A 245 745 261 HOH HOH . J 6 HOH A 246 746 272 HOH HOH . J 6 HOH A 247 747 125 HOH HOH . J 6 HOH A 248 748 159 HOH HOH . J 6 HOH A 249 749 180 HOH HOH . J 6 HOH A 250 750 171 HOH HOH . J 6 HOH A 251 751 163 HOH HOH . J 6 HOH A 252 752 235 HOH HOH . J 6 HOH A 253 753 155 HOH HOH . J 6 HOH A 254 754 107 HOH HOH . J 6 HOH A 255 755 231 HOH HOH . J 6 HOH A 256 756 150 HOH HOH . J 6 HOH A 257 757 170 HOH HOH . J 6 HOH A 258 758 92 HOH HOH . J 6 HOH A 259 759 236 HOH HOH . J 6 HOH A 260 760 76 HOH HOH . J 6 HOH A 261 761 208 HOH HOH . J 6 HOH A 262 762 220 HOH HOH . J 6 HOH A 263 763 142 HOH HOH . J 6 HOH A 264 764 136 HOH HOH . J 6 HOH A 265 765 239 HOH HOH . J 6 HOH A 266 766 211 HOH HOH . J 6 HOH A 267 767 157 HOH HOH . J 6 HOH A 268 768 206 HOH HOH . J 6 HOH A 269 769 102 HOH HOH . J 6 HOH A 270 770 122 HOH HOH . J 6 HOH A 271 771 119 HOH HOH . J 6 HOH A 272 772 223 HOH HOH . J 6 HOH A 273 773 140 HOH HOH . J 6 HOH A 274 774 105 HOH HOH . J 6 HOH A 275 775 246 HOH HOH . J 6 HOH A 276 776 270 HOH HOH . J 6 HOH A 277 777 97 HOH HOH . J 6 HOH A 278 778 169 HOH HOH . J 6 HOH A 279 779 197 HOH HOH . J 6 HOH A 280 780 188 HOH HOH . J 6 HOH A 281 781 152 HOH HOH . J 6 HOH A 282 782 143 HOH HOH . J 6 HOH A 283 783 126 HOH HOH . J 6 HOH A 284 784 238 HOH HOH . J 6 HOH A 285 785 259 HOH HOH . J 6 HOH A 286 786 86 HOH HOH . J 6 HOH A 287 787 262 HOH HOH . J 6 HOH A 288 788 273 HOH HOH . J 6 HOH A 289 789 104 HOH HOH . J 6 HOH A 290 790 106 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 5 _atom_site.Cartn_x -43.572 _atom_site.Cartn_y 22.729 _atom_site.Cartn_z 1.212 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 406 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #