data_6XEE # _model_server_result.job_id 4XD-w8k_hctu8ozG1BSmLA _model_server_result.datetime_utc '2024-11-16 07:33:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6XEE # _exptl.entry_id 6XEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XEE _cell.length_a 88.402 _cell.length_b 88.402 _cell.length_c 103.949 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 70 n y C1 C6 BEN sing 71 n y C1 C BEN sing 72 n n C2 C3 BEN sing 73 n y C2 H2 BEN sing 74 n n C3 C4 BEN doub 75 n y C3 H3 BEN sing 76 n n C4 C5 BEN sing 77 n y C4 H4 BEN sing 78 n n C5 C6 BEN doub 79 n y C5 H5 BEN sing 80 n n C6 H6 BEN sing 81 n n C N1 BEN doub 82 e n C N2 BEN sing 83 n n N1 HN1 BEN sing 84 n n N2 HN21 BEN sing 85 n n N2 HN22 BEN sing 86 n n # _atom_sites.entry_id 6XEE _atom_sites.fract_transf_matrix[1][1] 0.011312 _atom_sites.fract_transf_matrix[1][2] 0.006531 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BEN A 1 401 1 BEN BEN . C 3 PEG A 1 402 2 PEG PEG . D 2 BEN A 1 403 3 BEN BEN . E 4 TRS A 1 404 4 TRS TRS . F 5 HOH A 1 501 60 HOH HOH . F 5 HOH A 2 502 85 HOH HOH . F 5 HOH A 3 503 55 HOH HOH . F 5 HOH A 4 504 57 HOH HOH . F 5 HOH A 5 505 83 HOH HOH . F 5 HOH A 6 506 15 HOH HOH . F 5 HOH A 7 507 62 HOH HOH . F 5 HOH A 8 508 72 HOH HOH . F 5 HOH A 9 509 16 HOH HOH . F 5 HOH A 10 510 27 HOH HOH . F 5 HOH A 11 511 30 HOH HOH . F 5 HOH A 12 512 29 HOH HOH . F 5 HOH A 13 513 41 HOH HOH . F 5 HOH A 14 514 13 HOH HOH . F 5 HOH A 15 515 7 HOH HOH . F 5 HOH A 16 516 22 HOH HOH . F 5 HOH A 17 517 49 HOH HOH . F 5 HOH A 18 518 77 HOH HOH . F 5 HOH A 19 519 82 HOH HOH . F 5 HOH A 20 520 11 HOH HOH . F 5 HOH A 21 521 21 HOH HOH . F 5 HOH A 22 522 36 HOH HOH . F 5 HOH A 23 523 32 HOH HOH . F 5 HOH A 24 524 2 HOH HOH . F 5 HOH A 25 525 78 HOH HOH . F 5 HOH A 26 526 14 HOH HOH . F 5 HOH A 27 527 5 HOH HOH . F 5 HOH A 28 528 46 HOH HOH . F 5 HOH A 29 529 12 HOH HOH . F 5 HOH A 30 530 26 HOH HOH . F 5 HOH A 31 531 76 HOH HOH . F 5 HOH A 32 532 43 HOH HOH . F 5 HOH A 33 533 80 HOH HOH . F 5 HOH A 34 534 28 HOH HOH . F 5 HOH A 35 535 45 HOH HOH . F 5 HOH A 36 536 6 HOH HOH . F 5 HOH A 37 537 79 HOH HOH . F 5 HOH A 38 538 35 HOH HOH . F 5 HOH A 39 539 61 HOH HOH . F 5 HOH A 40 540 75 HOH HOH . F 5 HOH A 41 541 34 HOH HOH . F 5 HOH A 42 542 4 HOH HOH . F 5 HOH A 43 543 42 HOH HOH . F 5 HOH A 44 544 8 HOH HOH . F 5 HOH A 45 545 51 HOH HOH . F 5 HOH A 46 546 81 HOH HOH . F 5 HOH A 47 547 25 HOH HOH . F 5 HOH A 48 548 9 HOH HOH . F 5 HOH A 49 549 10 HOH HOH . F 5 HOH A 50 550 56 HOH HOH . F 5 HOH A 51 551 73 HOH HOH . F 5 HOH A 52 552 40 HOH HOH . F 5 HOH A 53 553 58 HOH HOH . F 5 HOH A 54 554 20 HOH HOH . F 5 HOH A 55 555 68 HOH HOH . F 5 HOH A 56 556 24 HOH HOH . F 5 HOH A 57 557 74 HOH HOH . F 5 HOH A 58 558 71 HOH HOH . F 5 HOH A 59 559 54 HOH HOH . F 5 HOH A 60 560 31 HOH HOH . F 5 HOH A 61 561 37 HOH HOH . F 5 HOH A 62 562 50 HOH HOH . F 5 HOH A 63 563 17 HOH HOH . F 5 HOH A 64 564 65 HOH HOH . F 5 HOH A 65 565 52 HOH HOH . F 5 HOH A 66 566 38 HOH HOH . F 5 HOH A 67 567 67 HOH HOH . F 5 HOH A 68 568 53 HOH HOH . F 5 HOH A 69 569 47 HOH HOH . F 5 HOH A 70 570 63 HOH HOH . F 5 HOH A 71 571 69 HOH HOH . F 5 HOH A 72 572 64 HOH HOH . F 5 HOH A 73 573 1 HOH HOH . F 5 HOH A 74 574 19 HOH HOH . F 5 HOH A 75 575 23 HOH HOH . F 5 HOH A 76 576 86 HOH HOH . F 5 HOH A 77 577 59 HOH HOH . F 5 HOH A 78 578 70 HOH HOH . F 5 HOH A 79 579 84 HOH HOH . F 5 HOH A 80 580 33 HOH HOH . F 5 HOH A 81 581 3 HOH HOH . F 5 HOH A 82 582 87 HOH HOH . F 5 HOH A 83 583 66 HOH HOH . F 5 HOH A 84 584 39 HOH HOH . F 5 HOH A 85 585 18 HOH HOH . F 5 HOH A 86 586 48 HOH HOH . F 5 HOH A 87 587 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . B 2 -64.645 18.649 7.623 0.81 73.13 ? C1 BEN 401 A 1 HETATM 2 C C2 BEN . . . B 2 -65.385 19.636 8.257 0.81 75.59 ? C2 BEN 401 A 1 HETATM 3 C C3 BEN . . . B 2 -66.632 19.325 8.769 0.81 81.75 ? C3 BEN 401 A 1 HETATM 4 C C4 BEN . . . B 2 -67.128 18.035 8.635 0.81 87.34 ? C4 BEN 401 A 1 HETATM 5 C C5 BEN . . . B 2 -66.388 17.051 8.002 0.81 86.52 ? C5 BEN 401 A 1 HETATM 6 C C6 BEN . . . B 2 -65.139 17.363 7.493 0.81 80.27 ? C6 BEN 401 A 1 HETATM 7 C C BEN . . . B 2 -63.277 18.977 7.048 0.81 67.46 ? C BEN 401 A 1 HETATM 8 N N1 BEN . . . B 2 -62.964 18.574 5.688 0.81 70.23 ? N1 BEN 401 A 1 HETATM 9 N N2 BEN . . . B 2 -62.44 19.597 7.74 0.81 68.14 ? N2 BEN 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #