data_6XEG # _model_server_result.job_id W9ZLyMcKJdeGxha4mctLAQ _model_server_result.datetime_utc '2024-11-16 09:31:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xeg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6XEG # _exptl.entry_id 6XEG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XEG _cell.length_a 88.644 _cell.length_b 88.644 _cell.length_c 104.691 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XEG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 181 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 181 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.578 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 351 n n C C2 TRS sing 352 n n C C3 TRS sing 353 n n C N TRS sing 354 n n C1 O1 TRS sing 355 n n C1 H11 TRS sing 356 n n C1 H12 TRS sing 357 n n C2 O2 TRS sing 358 n n C2 H21 TRS sing 359 n n C2 H22 TRS sing 360 n n C3 O3 TRS sing 361 n n C3 H31 TRS sing 362 n n C3 H32 TRS sing 363 n n N HN1 TRS sing 364 n n N HN2 TRS sing 365 n n N HN3 TRS sing 366 n n O1 HO1 TRS sing 367 n n O2 HO2 TRS sing 368 n n O3 HO3 TRS sing 369 n n # _atom_sites.entry_id 6XEG _atom_sites.fract_transf_matrix[1][1] 0.011281 _atom_sites.fract_transf_matrix[1][2] 0.006513 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 1 TRS TRS . C 3 BEN A 1 402 2 BEN BEN . D 4 MG A 1 403 5 MG MG . E 5 WO4 A 1 404 401 WO4 WO4 . F 6 HOH A 1 501 16 HOH HOH . F 6 HOH A 2 502 62 HOH HOH . F 6 HOH A 3 503 63 HOH HOH . F 6 HOH A 4 504 70 HOH HOH . F 6 HOH A 5 505 21 HOH HOH . F 6 HOH A 6 506 25 HOH HOH . F 6 HOH A 7 507 30 HOH HOH . F 6 HOH A 8 508 50 HOH HOH . F 6 HOH A 9 509 71 HOH HOH . F 6 HOH A 10 510 74 HOH HOH . F 6 HOH A 11 511 7 HOH HOH . F 6 HOH A 12 512 78 HOH HOH . F 6 HOH A 13 513 27 HOH HOH . F 6 HOH A 14 514 36 HOH HOH . F 6 HOH A 15 515 33 HOH HOH . F 6 HOH A 16 516 43 HOH HOH . F 6 HOH A 17 517 35 HOH HOH . F 6 HOH A 18 518 39 HOH HOH . F 6 HOH A 19 519 48 HOH HOH . F 6 HOH A 20 520 8 HOH HOH . F 6 HOH A 21 521 4 HOH HOH . F 6 HOH A 22 522 12 HOH HOH . F 6 HOH A 23 523 10 HOH HOH . F 6 HOH A 24 524 72 HOH HOH . F 6 HOH A 25 525 22 HOH HOH . F 6 HOH A 26 526 38 HOH HOH . F 6 HOH A 27 527 86 HOH HOH . F 6 HOH A 28 528 58 HOH HOH . F 6 HOH A 29 529 13 HOH HOH . F 6 HOH A 30 530 5 HOH HOH . F 6 HOH A 31 531 32 HOH HOH . F 6 HOH A 32 532 87 HOH HOH . F 6 HOH A 33 533 57 HOH HOH . F 6 HOH A 34 534 20 HOH HOH . F 6 HOH A 35 535 53 HOH HOH . F 6 HOH A 36 536 34 HOH HOH . F 6 HOH A 37 537 60 HOH HOH . F 6 HOH A 38 538 54 HOH HOH . F 6 HOH A 39 539 49 HOH HOH . F 6 HOH A 40 540 6 HOH HOH . F 6 HOH A 41 541 52 HOH HOH . F 6 HOH A 42 542 23 HOH HOH . F 6 HOH A 43 543 24 HOH HOH . F 6 HOH A 44 544 18 HOH HOH . F 6 HOH A 45 545 3 HOH HOH . F 6 HOH A 46 546 79 HOH HOH . F 6 HOH A 47 547 41 HOH HOH . F 6 HOH A 48 548 15 HOH HOH . F 6 HOH A 49 549 31 HOH HOH . F 6 HOH A 50 550 9 HOH HOH . F 6 HOH A 51 551 28 HOH HOH . F 6 HOH A 52 552 47 HOH HOH . F 6 HOH A 53 553 42 HOH HOH . F 6 HOH A 54 554 51 HOH HOH . F 6 HOH A 55 555 40 HOH HOH . F 6 HOH A 56 556 61 HOH HOH . F 6 HOH A 57 557 44 HOH HOH . F 6 HOH A 58 558 65 HOH HOH . F 6 HOH A 59 559 29 HOH HOH . F 6 HOH A 60 560 46 HOH HOH . F 6 HOH A 61 561 2 HOH HOH . F 6 HOH A 62 562 69 HOH HOH . F 6 HOH A 63 563 64 HOH HOH . F 6 HOH A 64 564 1 HOH HOH . F 6 HOH A 65 565 56 HOH HOH . F 6 HOH A 66 566 55 HOH HOH . F 6 HOH A 67 567 67 HOH HOH . F 6 HOH A 68 568 17 HOH HOH . F 6 HOH A 69 569 19 HOH HOH . F 6 HOH A 70 570 83 HOH HOH . F 6 HOH A 71 571 59 HOH HOH . F 6 HOH A 72 572 37 HOH HOH . F 6 HOH A 73 573 89 HOH HOH . F 6 HOH A 74 574 88 HOH HOH . F 6 HOH A 75 575 76 HOH HOH . F 6 HOH A 76 576 77 HOH HOH . F 6 HOH A 77 577 85 HOH HOH . F 6 HOH A 78 578 73 HOH HOH . F 6 HOH A 79 579 66 HOH HOH . F 6 HOH A 80 580 68 HOH HOH . F 6 HOH A 81 581 84 HOH HOH . F 6 HOH A 82 582 75 HOH HOH . F 6 HOH A 83 583 45 HOH HOH . F 6 HOH A 84 584 26 HOH HOH . F 6 HOH A 85 585 80 HOH HOH . F 6 HOH A 86 586 11 HOH HOH . F 6 HOH A 87 587 14 HOH HOH . F 6 HOH A 88 588 81 HOH HOH . F 6 HOH A 89 589 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 -45.138 -2.289 21.716 1 58.06 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . B 2 -46.483 -2.777 21.19 1 66.29 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . B 2 -45.128 -2.244 23.229 1 59.27 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . B 2 -44.852 -0.884 21.211 1 57.03 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . B 2 -44.067 -3.191 21.323 1 56.8 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . B 2 -46.833 -3.944 21.892 1 83.01 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . B 2 -43.806 -1.934 23.597 1 63 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . B 2 -43.501 -0.792 20.843 1 71.37 ? O3 TRS 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #