data_6XEG
#
_model_server_result.job_id            8eDX_feIqwsOlaD2t02QFw 
_model_server_result.datetime_utc      '2024-11-16 09:47:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xeg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    6XEG 
#
_exptl.entry_id    6XEG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XEG 
_cell.length_a            88.644 
_cell.length_b            88.644 
_cell.length_c            104.691 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XEG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OD1 
_struct_conn.ptnr1_label_comp_id            ASP 
_struct_conn.ptnr1_label_seq_id             181 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASP 
_struct_conn.ptnr1_auth_seq_id              181 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            MG 
_struct_conn.ptnr2_label_comp_id            MG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             MG 
_struct_conn.ptnr2_auth_seq_id              403 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.578 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 70 n y 
C1 C6 BEN sing 71 n y 
C1 C BEN sing 72 n n 
C2 C3 BEN sing 73 n y 
C2 H2 BEN sing 74 n n 
C3 C4 BEN doub 75 n y 
C3 H3 BEN sing 76 n n 
C4 C5 BEN sing 77 n y 
C4 H4 BEN sing 78 n n 
C5 C6 BEN doub 79 n y 
C5 H5 BEN sing 80 n n 
C6 H6 BEN sing 81 n n 
C N1 BEN doub 82 e n 
C N2 BEN sing 83 n n 
N1 HN1 BEN sing 84 n n 
N2 HN21 BEN sing 85 n n 
N2 HN22 BEN sing 86 n n 
#
_atom_sites.entry_id                     6XEG 
_atom_sites.fract_transf_matrix[1][1]    0.011281 
_atom_sites.fract_transf_matrix[1][2]    0.006513 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013026 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009552 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 TRS A 1 401 1 TRS TRS . 
C 3 BEN A 1 402 2 BEN BEN . 
D 4 MG A 1 403 5 MG MG . 
E 5 WO4 A 1 404 401 WO4 WO4 . 
F 6 HOH A 1 501 16 HOH HOH . 
F 6 HOH A 2 502 62 HOH HOH . 
F 6 HOH A 3 503 63 HOH HOH . 
F 6 HOH A 4 504 70 HOH HOH . 
F 6 HOH A 5 505 21 HOH HOH . 
F 6 HOH A 6 506 25 HOH HOH . 
F 6 HOH A 7 507 30 HOH HOH . 
F 6 HOH A 8 508 50 HOH HOH . 
F 6 HOH A 9 509 71 HOH HOH . 
F 6 HOH A 10 510 74 HOH HOH . 
F 6 HOH A 11 511 7 HOH HOH . 
F 6 HOH A 12 512 78 HOH HOH . 
F 6 HOH A 13 513 27 HOH HOH . 
F 6 HOH A 14 514 36 HOH HOH . 
F 6 HOH A 15 515 33 HOH HOH . 
F 6 HOH A 16 516 43 HOH HOH . 
F 6 HOH A 17 517 35 HOH HOH . 
F 6 HOH A 18 518 39 HOH HOH . 
F 6 HOH A 19 519 48 HOH HOH . 
F 6 HOH A 20 520 8 HOH HOH . 
F 6 HOH A 21 521 4 HOH HOH . 
F 6 HOH A 22 522 12 HOH HOH . 
F 6 HOH A 23 523 10 HOH HOH . 
F 6 HOH A 24 524 72 HOH HOH . 
F 6 HOH A 25 525 22 HOH HOH . 
F 6 HOH A 26 526 38 HOH HOH . 
F 6 HOH A 27 527 86 HOH HOH . 
F 6 HOH A 28 528 58 HOH HOH . 
F 6 HOH A 29 529 13 HOH HOH . 
F 6 HOH A 30 530 5 HOH HOH . 
F 6 HOH A 31 531 32 HOH HOH . 
F 6 HOH A 32 532 87 HOH HOH . 
F 6 HOH A 33 533 57 HOH HOH . 
F 6 HOH A 34 534 20 HOH HOH . 
F 6 HOH A 35 535 53 HOH HOH . 
F 6 HOH A 36 536 34 HOH HOH . 
F 6 HOH A 37 537 60 HOH HOH . 
F 6 HOH A 38 538 54 HOH HOH . 
F 6 HOH A 39 539 49 HOH HOH . 
F 6 HOH A 40 540 6 HOH HOH . 
F 6 HOH A 41 541 52 HOH HOH . 
F 6 HOH A 42 542 23 HOH HOH . 
F 6 HOH A 43 543 24 HOH HOH . 
F 6 HOH A 44 544 18 HOH HOH . 
F 6 HOH A 45 545 3 HOH HOH . 
F 6 HOH A 46 546 79 HOH HOH . 
F 6 HOH A 47 547 41 HOH HOH . 
F 6 HOH A 48 548 15 HOH HOH . 
F 6 HOH A 49 549 31 HOH HOH . 
F 6 HOH A 50 550 9 HOH HOH . 
F 6 HOH A 51 551 28 HOH HOH . 
F 6 HOH A 52 552 47 HOH HOH . 
F 6 HOH A 53 553 42 HOH HOH . 
F 6 HOH A 54 554 51 HOH HOH . 
F 6 HOH A 55 555 40 HOH HOH . 
F 6 HOH A 56 556 61 HOH HOH . 
F 6 HOH A 57 557 44 HOH HOH . 
F 6 HOH A 58 558 65 HOH HOH . 
F 6 HOH A 59 559 29 HOH HOH . 
F 6 HOH A 60 560 46 HOH HOH . 
F 6 HOH A 61 561 2 HOH HOH . 
F 6 HOH A 62 562 69 HOH HOH . 
F 6 HOH A 63 563 64 HOH HOH . 
F 6 HOH A 64 564 1 HOH HOH . 
F 6 HOH A 65 565 56 HOH HOH . 
F 6 HOH A 66 566 55 HOH HOH . 
F 6 HOH A 67 567 67 HOH HOH . 
F 6 HOH A 68 568 17 HOH HOH . 
F 6 HOH A 69 569 19 HOH HOH . 
F 6 HOH A 70 570 83 HOH HOH . 
F 6 HOH A 71 571 59 HOH HOH . 
F 6 HOH A 72 572 37 HOH HOH . 
F 6 HOH A 73 573 89 HOH HOH . 
F 6 HOH A 74 574 88 HOH HOH . 
F 6 HOH A 75 575 76 HOH HOH . 
F 6 HOH A 76 576 77 HOH HOH . 
F 6 HOH A 77 577 85 HOH HOH . 
F 6 HOH A 78 578 73 HOH HOH . 
F 6 HOH A 79 579 66 HOH HOH . 
F 6 HOH A 80 580 68 HOH HOH . 
F 6 HOH A 81 581 84 HOH HOH . 
F 6 HOH A 82 582 75 HOH HOH . 
F 6 HOH A 83 583 45 HOH HOH . 
F 6 HOH A 84 584 26 HOH HOH . 
F 6 HOH A 85 585 80 HOH HOH . 
F 6 HOH A 86 586 11 HOH HOH . 
F 6 HOH A 87 587 14 HOH HOH . 
F 6 HOH A 88 588 81 HOH HOH . 
F 6 HOH A 89 589 82 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . C 3 -65.062 18.62 8.778 0.9 58.65 ? C1 BEN 402 A 1 
HETATM 2 C C2 BEN . . . C 3 -64.905 17.657 7.794 0.9 55.07 ? C2 BEN 402 A 1 
HETATM 3 C C3 BEN . . . C 3 -63.78 17.672 6.988 0.9 50.58 ? C3 BEN 402 A 1 
HETATM 4 C C4 BEN . . . C 3 -62.814 18.648 7.166 0.9 52.01 ? C4 BEN 402 A 1 
HETATM 5 C C5 BEN . . . C 3 -62.97 19.608 8.155 0.9 59.62 ? C5 BEN 402 A 1 
HETATM 6 C C6 BEN . . . C 3 -64.094 19.598 8.965 0.9 58.32 ? C6 BEN 402 A 1 
HETATM 7 C C BEN . . . C 3 -66.304 18.606 9.667 0.9 57.19 ? C BEN 402 A 1 
HETATM 8 N N1 BEN . . . C 3 -66.779 17.503 10.049 0.9 59.81 ? N1 BEN 402 A 1 
HETATM 9 N N2 BEN . . . C 3 -66.907 19.88 10.051 0.9 52.37 ? N2 BEN 402 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#