data_6XER
#
_model_server_result.job_id            VqVPYPHhm3zKTQ8pHOzl_Q 
_model_server_result.datetime_utc      '2024-11-17 14:28:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xer 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":501}' 
#
_entry.id    6XER 
#
_exptl.entry_id    6XER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XER 
_cell.length_a            65.717 
_cell.length_b            127.025 
_cell.length_c            254.208 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 L N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O2G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc2 F O2B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 G MG MG . A MG 502 1_555 Q O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc4 G MG MG . A MG 502 1_555 Q O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 G MG MG . A MG 502 1_555 Q O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc6 G MG MG . A MG 502 1_555 Q O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc7 L O3G GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc8 L O2B GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc9 M MG MG . C MG 502 1_555 S O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc10 M MG MG . C MG 502 1_555 S O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc11 M MG MG . C MG 502 1_555 S O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc12 M MG MG . C MG 502 1_555 S O HOH . C HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 174 n n 
PG O2G GTP sing 175 n n 
PG O3G GTP sing 176 n n 
PG O3B GTP sing 177 n n 
O2G HOG2 GTP sing 178 n n 
O3G HOG3 GTP sing 179 n n 
O3B PB GTP sing 180 n n 
PB O1B GTP doub 181 n n 
PB O2B GTP sing 182 n n 
PB O3A GTP sing 183 n n 
O2B HOB2 GTP sing 184 n n 
O3A PA GTP sing 185 n n 
PA O1A GTP doub 186 n n 
PA O2A GTP sing 187 n n 
PA O5' GTP sing 188 n n 
O2A HOA2 GTP sing 189 n n 
O5' C5' GTP sing 190 n n 
C5' C4' GTP sing 191 n n 
C5' H5' GTP sing 192 n n 
C5' "H5''" GTP sing 193 n n 
C4' O4' GTP sing 194 n n 
C4' C3' GTP sing 195 n n 
C4' H4' GTP sing 196 n n 
O4' C1' GTP sing 197 n n 
C3' O3' GTP sing 198 n n 
C3' C2' GTP sing 199 n n 
C3' H3' GTP sing 200 n n 
O3' HO3' GTP sing 201 n n 
C2' O2' GTP sing 202 n n 
C2' C1' GTP sing 203 n n 
C2' H2' GTP sing 204 n n 
O2' HO2' GTP sing 205 n n 
C1' N9 GTP sing 206 n n 
C1' H1' GTP sing 207 n n 
N9 C8 GTP sing 208 n y 
N9 C4 GTP sing 209 n y 
C8 N7 GTP doub 210 n y 
C8 H8 GTP sing 211 n n 
N7 C5 GTP sing 212 n y 
C5 C6 GTP sing 213 n n 
C5 C4 GTP doub 214 n y 
C6 O6 GTP doub 215 n n 
C6 N1 GTP sing 216 n n 
N1 C2 GTP sing 217 n n 
N1 HN1 GTP sing 218 n n 
C2 N2 GTP sing 219 n n 
C2 N3 GTP doub 220 n n 
N2 HN21 GTP sing 221 n n 
N2 HN22 GTP sing 222 n n 
N3 C4 GTP sing 223 n n 
#
_atom_sites.entry_id                     6XER 
_atom_sites.fract_transf_matrix[1][1]    0.015217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 501 501 GTP GTP . 
G 5 MG A 1 502 502 MG MG . 
H 6 SO4 A 1 503 1 SO4 SO4 . 
I 7 GDP B 1 501 501 GDP GDP . 
J 8 LOC B 1 502 502 LOC LOC . 
K 6 SO4 B 1 503 2 SO4 SO4 . 
L 4 GTP C 1 501 501 GTP GTP . 
M 5 MG C 1 502 502 MG MG . 
N 4 GTP D 1 501 501 GTP GTP . 
O 8 LOC D 1 502 502 LOC LOC . 
P 6 SO4 D 1 503 3 SO4 SO4 . 
Q 9 HOH A 1 601 4 HOH HOH . 
Q 9 HOH A 2 602 6 HOH HOH . 
Q 9 HOH A 3 603 3 HOH HOH . 
Q 9 HOH A 4 604 5 HOH HOH . 
Q 9 HOH A 5 605 11 HOH HOH . 
Q 9 HOH A 6 606 13 HOH HOH . 
Q 9 HOH A 7 607 14 HOH HOH . 
Q 9 HOH A 8 608 12 HOH HOH . 
Q 9 HOH A 9 609 32 HOH HOH . 
R 9 HOH B 1 601 17 HOH HOH . 
R 9 HOH B 2 602 15 HOH HOH . 
R 9 HOH B 3 603 16 HOH HOH . 
S 9 HOH C 1 601 8 HOH HOH . 
S 9 HOH C 2 602 33 HOH HOH . 
S 9 HOH C 3 603 10 HOH HOH . 
S 9 HOH C 4 604 7 HOH HOH . 
S 9 HOH C 5 605 28 HOH HOH . 
S 9 HOH C 6 606 9 HOH HOH . 
S 9 HOH C 7 607 18 HOH HOH . 
S 9 HOH C 8 608 19 HOH HOH . 
S 9 HOH C 9 609 21 HOH HOH . 
S 9 HOH C 10 610 22 HOH HOH . 
S 9 HOH C 11 611 26 HOH HOH . 
S 9 HOH C 12 612 25 HOH HOH . 
S 9 HOH C 13 613 23 HOH HOH . 
T 9 HOH D 1 601 30 HOH HOH . 
T 9 HOH D 2 602 31 HOH HOH . 
T 9 HOH D 3 603 29 HOH HOH . 
U 9 HOH E 1 201 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . L 4 22.614 59.589 21.956 1 55.56 ? PG GTP 501 C 1 
HETATM 2 O O1G GTP . . . L 4 23.367 59.234 20.671 1 55.16 ? O1G GTP 501 C 1 
HETATM 3 O O2G GTP . . . L 4 23.642 59.873 23.021 1 50.58 ? O2G GTP 501 C 1 
HETATM 4 O O3G GTP . . . L 4 21.683 60.788 21.766 1 43.5 ? O3G GTP 501 C 1 
HETATM 5 O O3B GTP . . . L 4 21.834 58.243 22.359 1 54.23 ? O3B GTP 501 C 1 
HETATM 6 P PB GTP . . . L 4 20.293 57.958 22.156 1 59.49 ? PB GTP 501 C 1 
HETATM 7 O O1B GTP . . . L 4 20.12 56.525 22.49 1 60.17 ? O1B GTP 501 C 1 
HETATM 8 O O2B GTP . . . L 4 19.446 58.827 23.002 1 51.91 ? O2B GTP 501 C 1 
HETATM 9 O O3A GTP . . . L 4 19.882 58.163 20.65 1 59.99 ? O3A GTP 501 C 1 
HETATM 10 P PA GTP . . . L 4 18.391 57.85 20.12 1 63.2 ? PA GTP 501 C 1 
HETATM 11 O O1A GTP . . . L 4 17.671 56.916 21.053 1 62.7 ? O1A GTP 501 C 1 
HETATM 12 O O2A GTP . . . L 4 17.64 59.143 19.902 1 56.87 ? O2A GTP 501 C 1 
HETATM 13 O O5' GTP . . . L 4 18.754 57.08 18.755 1 53.32 ? O5' GTP 501 C 1 
HETATM 14 C C5' GTP . . . L 4 18.147 57.426 17.544 1 49.41 ? C5' GTP 501 C 1 
HETATM 15 C C4' GTP . . . L 4 17.439 56.204 17.005 1 48.97 ? C4' GTP 501 C 1 
HETATM 16 O O4' GTP . . . L 4 16.352 55.857 17.847 1 50.48 ? O4' GTP 501 C 1 
HETATM 17 C C3' GTP . . . L 4 16.856 56.586 15.67 1 49.92 ? C3' GTP 501 C 1 
HETATM 18 O O3' GTP . . . L 4 16.758 55.454 14.845 1 53.32 ? O3' GTP 501 C 1 
HETATM 19 C C2' GTP . . . L 4 15.476 57.051 16.039 1 55.89 ? C2' GTP 501 C 1 
HETATM 20 O O2' GTP . . . L 4 14.554 56.923 14.988 1 64.48 ? O2' GTP 501 C 1 
HETATM 21 C C1' GTP . . . L 4 15.134 56.123 17.178 1 51.5 ? C1' GTP 501 C 1 
HETATM 22 N N9 GTP . . . L 4 14.324 56.835 18.154 1 58.72 ? N9 GTP 501 C 1 
HETATM 23 C C8 GTP . . . L 4 14.701 57.886 18.956 1 58.66 ? C8 GTP 501 C 1 
HETATM 24 N N7 GTP . . . L 4 13.641 58.202 19.735 1 59.51 ? N7 GTP 501 C 1 
HETATM 25 C C5 GTP . . . L 4 12.624 57.344 19.438 1 62.27 ? C5 GTP 501 C 1 
HETATM 26 C C6 GTP . . . L 4 11.326 57.187 19.915 1 62.65 ? C6 GTP 501 C 1 
HETATM 27 O O6 GTP . . . L 4 10.905 57.942 20.801 1 64.47 ? O6 GTP 501 C 1 
HETATM 28 N N1 GTP . . . L 4 10.52 56.189 19.388 1 48.58 ? N1 GTP 501 C 1 
HETATM 29 C C2 GTP . . . L 4 10.985 55.366 18.395 1 52.65 ? C2 GTP 501 C 1 
HETATM 30 N N2 GTP . . . L 4 10.221 54.404 17.87 1 58.08 ? N2 GTP 501 C 1 
HETATM 31 N N3 GTP . . . L 4 12.267 55.533 17.934 1 56.39 ? N3 GTP 501 C 1 
HETATM 32 C C4 GTP . . . L 4 13.054 56.49 18.445 1 58.27 ? C4 GTP 501 C 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           32 
#