data_6XER
#
_model_server_result.job_id            vuRVkthNxI-N8x_EmiekdQ 
_model_server_result.datetime_utc      '2025-06-23 05:09:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xer 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":502}' 
#
_entry.id    6XER 
#
_exptl.entry_id    6XER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              399.437 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XER 
_cell.length_a            65.717 
_cell.length_b            127.025 
_cell.length_c            254.208 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 J N N 
? 8 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O2G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc2 F O2B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc3 G MG MG . A MG 502 1_555 Q O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc4 G MG MG . A MG 502 1_555 Q O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 G MG MG . A MG 502 1_555 Q O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc6 G MG MG . A MG 502 1_555 Q O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc7 L O3G GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc8 L O2B GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc9 M MG MG . C MG 502 1_555 S O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc10 M MG MG . C MG 502 1_555 S O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc11 M MG MG . C MG 502 1_555 S O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc12 M MG MG . C MG 502 1_555 S O HOH . C HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
#
_chem_comp.formula           'C22 H25 N O6' 
_chem_comp.formula_weight    399.437 
_chem_comp.id                LOC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     COLCHICINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C12 LOC doub 289 n n 
C12 C13 LOC sing 290 n n 
C12 N1 LOC sing 291 n n 
N1 C11 LOC sing 292 n n 
C11 C14 LOC sing 293 n n 
C11 C10 LOC sing 294 n n 
C14 C15 LOC doub 295 n n 
C14 C21 LOC sing 296 n n 
C15 C16 LOC sing 297 n n 
C10 C9 LOC sing 298 n n 
C9 C8 LOC sing 299 n n 
C8 C7 LOC doub 300 n y 
C8 C22 LOC sing 301 n y 
C7 C5 LOC sing 302 n y 
C5 C3 LOC doub 303 n y 
C5 O3 LOC sing 304 n n 
C3 C1 LOC sing 305 n y 
C3 O2 LOC sing 306 n n 
C1 O1 LOC sing 307 n n 
C1 C22 LOC doub 308 n y 
O1 C2 LOC sing 309 n n 
O2 C4 LOC sing 310 n n 
O3 C6 LOC sing 311 n n 
C22 C21 LOC sing 312 n n 
C21 C20 LOC doub 313 n n 
C20 C19 LOC sing 314 n n 
C19 C17 LOC doub 315 n n 
C17 C16 LOC sing 316 n n 
C17 O6 LOC sing 317 n n 
C16 O5 LOC doub 318 n n 
O6 C18 LOC sing 319 n n 
C13 H13 LOC sing 320 n n 
C13 H13A LOC sing 321 n n 
C13 H13B LOC sing 322 n n 
N1 HN1 LOC sing 323 n n 
C11 H11 LOC sing 324 n n 
C15 H15 LOC sing 325 n n 
C10 H10 LOC sing 326 n n 
C10 H10A LOC sing 327 n n 
C9 H9 LOC sing 328 n n 
C9 H9A LOC sing 329 n n 
C7 H7 LOC sing 330 n n 
C2 H2 LOC sing 331 n n 
C2 H2A LOC sing 332 n n 
C2 H2B LOC sing 333 n n 
C4 H4 LOC sing 334 n n 
C4 H4A LOC sing 335 n n 
C4 H4B LOC sing 336 n n 
C6 H6 LOC sing 337 n n 
C6 H6A LOC sing 338 n n 
C6 H6B LOC sing 339 n n 
C20 H20 LOC sing 340 n n 
C19 H19 LOC sing 341 n n 
C18 H18 LOC sing 342 n n 
C18 H18A LOC sing 343 n n 
C18 H18B LOC sing 344 n n 
#
_atom_sites.entry_id                     6XER 
_atom_sites.fract_transf_matrix[1][1]    0.015217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003934 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 GTP A 1 501 501 GTP GTP . 
G 5 MG A 1 502 502 MG MG . 
H 6 SO4 A 1 503 1 SO4 SO4 . 
I 7 GDP B 1 501 501 GDP GDP . 
J 8 LOC B 1 502 502 LOC LOC . 
K 6 SO4 B 1 503 2 SO4 SO4 . 
L 4 GTP C 1 501 501 GTP GTP . 
M 5 MG C 1 502 502 MG MG . 
N 4 GTP D 1 501 501 GTP GTP . 
O 8 LOC D 1 502 502 LOC LOC . 
P 6 SO4 D 1 503 3 SO4 SO4 . 
Q 9 HOH A 1 601 4 HOH HOH . 
Q 9 HOH A 2 602 6 HOH HOH . 
Q 9 HOH A 3 603 3 HOH HOH . 
Q 9 HOH A 4 604 5 HOH HOH . 
Q 9 HOH A 5 605 11 HOH HOH . 
Q 9 HOH A 6 606 13 HOH HOH . 
Q 9 HOH A 7 607 14 HOH HOH . 
Q 9 HOH A 8 608 12 HOH HOH . 
Q 9 HOH A 9 609 32 HOH HOH . 
R 9 HOH B 1 601 17 HOH HOH . 
R 9 HOH B 2 602 15 HOH HOH . 
R 9 HOH B 3 603 16 HOH HOH . 
S 9 HOH C 1 601 8 HOH HOH . 
S 9 HOH C 2 602 33 HOH HOH . 
S 9 HOH C 3 603 10 HOH HOH . 
S 9 HOH C 4 604 7 HOH HOH . 
S 9 HOH C 5 605 28 HOH HOH . 
S 9 HOH C 6 606 9 HOH HOH . 
S 9 HOH C 7 607 18 HOH HOH . 
S 9 HOH C 8 608 19 HOH HOH . 
S 9 HOH C 9 609 21 HOH HOH . 
S 9 HOH C 10 610 22 HOH HOH . 
S 9 HOH C 11 611 26 HOH HOH . 
S 9 HOH C 12 612 25 HOH HOH . 
S 9 HOH C 13 613 23 HOH HOH . 
T 9 HOH D 1 601 30 HOH HOH . 
T 9 HOH D 2 602 31 HOH HOH . 
T 9 HOH D 3 603 29 HOH HOH . 
U 9 HOH E 1 201 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 LOC . . . O 8 19.02 64.56 11.806 1 65.34 ? O4 LOC 502 D 1 
HETATM 2 C C12 LOC . . . O 8 19.283 63.71 12.649 1 57.89 ? C12 LOC 502 D 1 
HETATM 3 C C13 LOC . . . O 8 18.318 62.624 12.996 1 49.04 ? C13 LOC 502 D 1 
HETATM 4 N N1 LOC . . . O 8 20.44 63.726 13.315 1 55.97 ? N1 LOC 502 D 1 
HETATM 5 C C11 LOC . . . O 8 21.403 64.796 13.12 1 55.34 ? C11 LOC 502 D 1 
HETATM 6 C C14 LOC . . . O 8 22.098 64.705 11.778 1 52.48 ? C14 LOC 502 D 1 
HETATM 7 C C15 LOC . . . O 8 22.215 63.439 11.288 1 50.71 ? C15 LOC 502 D 1 
HETATM 8 C C10 LOC . . . O 8 22.408 64.881 14.264 1 55.47 ? C10 LOC 502 D 1 
HETATM 9 C C9 LOC . . . O 8 23.48 65.927 13.937 1 60.48 ? C9 LOC 502 D 1 
HETATM 10 C C8 LOC . . . O 8 22.967 67.205 13.283 1 60.51 ? C8 LOC 502 D 1 
HETATM 11 C C7 LOC . . . O 8 22.946 68.403 13.989 1 63.37 ? C7 LOC 502 D 1 
HETATM 12 C C5 LOC . . . O 8 22.496 69.572 13.405 1 62.36 ? C5 LOC 502 D 1 
HETATM 13 C C3 LOC . . . O 8 22.065 69.571 12.076 1 56.24 ? C3 LOC 502 D 1 
HETATM 14 C C1 LOC . . . O 8 22.071 68.389 11.359 1 53.87 ? C1 LOC 502 D 1 
HETATM 15 O O1 LOC . . . O 8 21.647 68.348 10.042 1 54.83 ? O1 LOC 502 D 1 
HETATM 16 C C2 LOC . . . O 8 20.281 67.996 9.845 1 53.82 ? C2 LOC 502 D 1 
HETATM 17 O O2 LOC . . . O 8 21.603 70.738 11.505 1 54.72 ? O2 LOC 502 D 1 
HETATM 18 C C4 LOC . . . O 8 22.479 71.328 10.544 1 46.01 ? C4 LOC 502 D 1 
HETATM 19 O O3 LOC . . . O 8 22.435 70.783 14.036 1 61.63 ? O3 LOC 502 D 1 
HETATM 20 C C6 LOC . . . O 8 22.858 70.819 15.395 1 61.49 ? C6 LOC 502 D 1 
HETATM 21 C C22 LOC . . . O 8 22.535 67.198 11.952 1 54.67 ? C22 LOC 502 D 1 
HETATM 22 C C21 LOC . . . O 8 22.589 65.953 11.193 1 52.02 ? C21 LOC 502 D 1 
HETATM 23 C C20 LOC . . . O 8 23.279 66.029 9.951 1 53.41 ? C20 LOC 502 D 1 
HETATM 24 C C19 LOC . . . O 8 23.63 65.073 9.017 1 61.89 ? C19 LOC 502 D 1 
HETATM 25 C C17 LOC . . . O 8 23.351 63.708 8.986 1 59.53 ? C17 LOC 502 D 1 
HETATM 26 C C16 LOC . . . O 8 22.751 62.89 10.036 1 55.23 ? C16 LOC 502 D 1 
HETATM 27 O O5 LOC . . . O 8 22.706 61.672 9.836 1 66.13 ? O5 LOC 502 D 1 
HETATM 28 O O6 LOC . . . O 8 23.635 63.044 7.825 1 61.18 ? O6 LOC 502 D 1 
HETATM 29 C C18 LOC . . . O 8 24.496 63.688 6.885 1 60.46 ? C18 LOC 502 D 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           980 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#