data_6XES # _model_server_result.job_id G6s2M9xayRf5U6TIdg9ekQ _model_server_result.datetime_utc '2024-11-17 16:18:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":504}' # _entry.id 6XES # _exptl.entry_id 6XES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XES _cell.length_a 66.178 _cell.length_b 126.966 _cell.length_c 250.155 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XES _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 K O3G GTP . C GTP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc2 K O2B GTP . C GTP 501 1_555 L MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 L MG MG . C MG 502 1_555 S O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 L MG MG . C MG 502 1_555 S O HOH . C HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc5 L MG MG . C MG 502 1_555 S O HOH . C HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 L MG MG . C MG 502 1_555 S O HOH . C HOH 639 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6XES _atom_sites.fract_transf_matrix[1][1] 0.015111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 501 501 GTP GTP . G 5 SO4 A 1 502 601 SO4 SO4 . H 6 GDP B 1 501 501 GDP GDP . I 5 SO4 B 1 502 603 SO4 SO4 . J 7 TU3 B 1 503 1 TU3 TU3 . K 4 GTP C 1 501 501 GTP GTP . L 8 MG C 1 502 503 MG MG . M 4 GTP D 1 501 501 GTP GTP . N 5 SO4 D 1 502 602 SO4 SO4 . O 7 TU3 D 1 503 2 TU3 TU3 . P 9 DMS D 1 504 2 DMS DMS . Q 10 HOH A 1 601 209 HOH HOH . Q 10 HOH A 2 602 332 HOH HOH . Q 10 HOH A 3 603 35 HOH HOH . Q 10 HOH A 4 604 7 HOH HOH . Q 10 HOH A 5 605 147 HOH HOH . Q 10 HOH A 6 606 166 HOH HOH . Q 10 HOH A 7 607 112 HOH HOH . Q 10 HOH A 8 608 5 HOH HOH . Q 10 HOH A 9 609 359 HOH HOH . Q 10 HOH A 10 610 248 HOH HOH . Q 10 HOH A 11 611 26 HOH HOH . Q 10 HOH A 12 612 29 HOH HOH . Q 10 HOH A 13 613 266 HOH HOH . Q 10 HOH A 14 614 1 HOH HOH . Q 10 HOH A 15 615 270 HOH HOH . Q 10 HOH A 16 616 19 HOH HOH . Q 10 HOH A 17 617 159 HOH HOH . Q 10 HOH A 18 618 23 HOH HOH . Q 10 HOH A 19 619 31 HOH HOH . Q 10 HOH A 20 620 263 HOH HOH . Q 10 HOH A 21 621 18 HOH HOH . Q 10 HOH A 22 622 56 HOH HOH . Q 10 HOH A 23 623 36 HOH HOH . Q 10 HOH A 24 624 20 HOH HOH . Q 10 HOH A 25 625 39 HOH HOH . Q 10 HOH A 26 626 247 HOH HOH . Q 10 HOH A 27 627 149 HOH HOH . Q 10 HOH A 28 628 10 HOH HOH . Q 10 HOH A 29 629 13 HOH HOH . Q 10 HOH A 30 630 28 HOH HOH . Q 10 HOH A 31 631 37 HOH HOH . Q 10 HOH A 32 632 50 HOH HOH . Q 10 HOH A 33 633 272 HOH HOH . Q 10 HOH A 34 634 153 HOH HOH . Q 10 HOH A 35 635 146 HOH HOH . Q 10 HOH A 36 636 154 HOH HOH . Q 10 HOH A 37 637 30 HOH HOH . Q 10 HOH A 38 638 17 HOH HOH . Q 10 HOH A 39 639 165 HOH HOH . Q 10 HOH A 40 640 4 HOH HOH . Q 10 HOH A 41 641 48 HOH HOH . Q 10 HOH A 42 642 155 HOH HOH . Q 10 HOH A 43 643 239 HOH HOH . Q 10 HOH A 44 644 106 HOH HOH . Q 10 HOH A 45 645 220 HOH HOH . Q 10 HOH A 46 646 27 HOH HOH . Q 10 HOH A 47 647 144 HOH HOH . Q 10 HOH A 48 648 275 HOH HOH . Q 10 HOH A 49 649 6 HOH HOH . Q 10 HOH A 50 650 34 HOH HOH . Q 10 HOH A 51 651 358 HOH HOH . Q 10 HOH A 52 652 22 HOH HOH . Q 10 HOH A 53 653 43 HOH HOH . Q 10 HOH A 54 654 152 HOH HOH . Q 10 HOH A 55 655 156 HOH HOH . Q 10 HOH A 56 656 2 HOH HOH . Q 10 HOH A 57 657 273 HOH HOH . Q 10 HOH A 58 658 148 HOH HOH . Q 10 HOH A 59 659 3 HOH HOH . Q 10 HOH A 60 660 140 HOH HOH . Q 10 HOH A 61 661 9 HOH HOH . Q 10 HOH A 62 662 161 HOH HOH . Q 10 HOH A 63 663 160 HOH HOH . Q 10 HOH A 64 664 32 HOH HOH . Q 10 HOH A 65 665 162 HOH HOH . Q 10 HOH A 66 666 143 HOH HOH . Q 10 HOH A 67 667 38 HOH HOH . R 10 HOH B 1 601 52 HOH HOH . R 10 HOH B 2 602 139 HOH HOH . R 10 HOH B 3 603 54 HOH HOH . R 10 HOH B 4 604 175 HOH HOH . R 10 HOH B 5 605 221 HOH HOH . R 10 HOH B 6 606 59 HOH HOH . R 10 HOH B 7 607 171 HOH HOH . R 10 HOH B 8 608 126 HOH HOH . R 10 HOH B 9 609 45 HOH HOH . R 10 HOH B 10 610 316 HOH HOH . R 10 HOH B 11 611 142 HOH HOH . R 10 HOH B 12 612 44 HOH HOH . R 10 HOH B 13 613 179 HOH HOH . R 10 HOH B 14 614 60 HOH HOH . R 10 HOH B 15 615 15 HOH HOH . R 10 HOH B 16 616 170 HOH HOH . R 10 HOH B 17 617 335 HOH HOH . R 10 HOH B 18 618 58 HOH HOH . R 10 HOH B 19 619 182 HOH HOH . R 10 HOH B 20 620 224 HOH HOH . R 10 HOH B 21 621 178 HOH HOH . R 10 HOH B 22 622 53 HOH HOH . R 10 HOH B 23 623 173 HOH HOH . R 10 HOH B 24 624 177 HOH HOH . R 10 HOH B 25 625 180 HOH HOH . R 10 HOH B 26 626 41 HOH HOH . R 10 HOH B 27 627 61 HOH HOH . R 10 HOH B 28 628 46 HOH HOH . R 10 HOH B 29 629 16 HOH HOH . R 10 HOH B 30 630 14 HOH HOH . R 10 HOH B 31 631 57 HOH HOH . R 10 HOH B 32 632 174 HOH HOH . R 10 HOH B 33 633 277 HOH HOH . R 10 HOH B 34 634 80 HOH HOH . R 10 HOH B 35 635 210 HOH HOH . R 10 HOH B 36 636 334 HOH HOH . R 10 HOH B 37 637 51 HOH HOH . R 10 HOH B 38 638 172 HOH HOH . R 10 HOH B 39 639 352 HOH HOH . S 10 HOH C 1 601 55 HOH HOH . S 10 HOH C 2 602 82 HOH HOH . S 10 HOH C 3 603 200 HOH HOH . S 10 HOH C 4 604 92 HOH HOH . S 10 HOH C 5 605 72 HOH HOH . S 10 HOH C 6 606 194 HOH HOH . S 10 HOH C 7 607 78 HOH HOH . S 10 HOH C 8 608 90 HOH HOH . S 10 HOH C 9 609 298 HOH HOH . S 10 HOH C 10 610 185 HOH HOH . S 10 HOH C 11 611 104 HOH HOH . S 10 HOH C 12 612 68 HOH HOH . S 10 HOH C 13 613 64 HOH HOH . S 10 HOH C 14 614 237 HOH HOH . S 10 HOH C 15 615 93 HOH HOH . S 10 HOH C 16 616 320 HOH HOH . S 10 HOH C 17 617 187 HOH HOH . S 10 HOH C 18 618 225 HOH HOH . S 10 HOH C 19 619 73 HOH HOH . S 10 HOH C 20 620 103 HOH HOH . S 10 HOH C 21 621 195 HOH HOH . S 10 HOH C 22 622 102 HOH HOH . S 10 HOH C 23 623 231 HOH HOH . S 10 HOH C 24 624 230 HOH HOH . S 10 HOH C 25 625 62 HOH HOH . S 10 HOH C 26 626 89 HOH HOH . S 10 HOH C 27 627 213 HOH HOH . S 10 HOH C 28 628 235 HOH HOH . S 10 HOH C 29 629 74 HOH HOH . S 10 HOH C 30 630 292 HOH HOH . S 10 HOH C 31 631 97 HOH HOH . S 10 HOH C 32 632 236 HOH HOH . S 10 HOH C 33 633 192 HOH HOH . S 10 HOH C 34 634 96 HOH HOH . S 10 HOH C 35 635 8 HOH HOH . S 10 HOH C 36 636 85 HOH HOH . S 10 HOH C 37 637 77 HOH HOH . S 10 HOH C 38 638 88 HOH HOH . S 10 HOH C 39 639 105 HOH HOH . S 10 HOH C 40 640 79 HOH HOH . S 10 HOH C 41 641 186 HOH HOH . S 10 HOH C 42 642 212 HOH HOH . S 10 HOH C 43 643 318 HOH HOH . S 10 HOH C 44 644 228 HOH HOH . S 10 HOH C 45 645 86 HOH HOH . S 10 HOH C 46 646 338 HOH HOH . S 10 HOH C 47 647 84 HOH HOH . S 10 HOH C 48 648 145 HOH HOH . S 10 HOH C 49 649 70 HOH HOH . S 10 HOH C 50 650 98 HOH HOH . S 10 HOH C 51 651 189 HOH HOH . S 10 HOH C 52 652 190 HOH HOH . S 10 HOH C 53 653 184 HOH HOH . S 10 HOH C 54 654 233 HOH HOH . S 10 HOH C 55 655 196 HOH HOH . S 10 HOH C 56 656 94 HOH HOH . S 10 HOH C 57 657 339 HOH HOH . S 10 HOH C 58 658 69 HOH HOH . S 10 HOH C 59 659 353 HOH HOH . S 10 HOH C 60 660 234 HOH HOH . S 10 HOH C 61 661 348 HOH HOH . S 10 HOH C 62 662 188 HOH HOH . S 10 HOH C 63 663 191 HOH HOH . S 10 HOH C 64 664 87 HOH HOH . S 10 HOH C 65 665 67 HOH HOH . T 10 HOH D 1 601 132 HOH HOH . T 10 HOH D 2 602 204 HOH HOH . T 10 HOH D 3 603 121 HOH HOH . T 10 HOH D 4 604 134 HOH HOH . T 10 HOH D 5 605 313 HOH HOH . T 10 HOH D 6 606 129 HOH HOH . T 10 HOH D 7 607 163 HOH HOH . T 10 HOH D 8 608 131 HOH HOH . T 10 HOH D 9 609 110 HOH HOH . T 10 HOH D 10 610 114 HOH HOH . T 10 HOH D 11 611 109 HOH HOH . T 10 HOH D 12 612 238 HOH HOH . T 10 HOH D 13 613 123 HOH HOH . T 10 HOH D 14 614 201 HOH HOH . T 10 HOH D 15 615 218 HOH HOH . T 10 HOH D 16 616 306 HOH HOH . T 10 HOH D 17 617 124 HOH HOH . T 10 HOH D 18 618 242 HOH HOH . T 10 HOH D 19 619 240 HOH HOH . T 10 HOH D 20 620 120 HOH HOH . T 10 HOH D 21 621 122 HOH HOH . T 10 HOH D 22 622 314 HOH HOH . T 10 HOH D 23 623 113 HOH HOH . T 10 HOH D 24 624 75 HOH HOH . T 10 HOH D 25 625 135 HOH HOH . T 10 HOH D 26 626 24 HOH HOH . T 10 HOH D 27 627 130 HOH HOH . T 10 HOH D 28 628 125 HOH HOH . T 10 HOH D 29 629 311 HOH HOH . T 10 HOH D 30 630 95 HOH HOH . T 10 HOH D 31 631 111 HOH HOH . T 10 HOH D 32 632 202 HOH HOH . T 10 HOH D 33 633 217 HOH HOH . T 10 HOH D 34 634 205 HOH HOH . T 10 HOH D 35 635 107 HOH HOH . T 10 HOH D 36 636 300 HOH HOH . T 10 HOH D 37 637 319 HOH HOH . T 10 HOH D 38 638 76 HOH HOH . T 10 HOH D 39 639 117 HOH HOH . T 10 HOH D 40 640 133 HOH HOH . T 10 HOH D 41 641 65 HOH HOH . T 10 HOH D 42 642 116 HOH HOH . T 10 HOH D 43 643 214 HOH HOH . T 10 HOH D 44 644 207 HOH HOH . T 10 HOH D 45 645 356 HOH HOH . T 10 HOH D 46 646 355 HOH HOH . T 10 HOH D 47 647 211 HOH HOH . T 10 HOH D 48 648 241 HOH HOH . T 10 HOH D 49 649 115 HOH HOH . T 10 HOH D 50 650 215 HOH HOH . T 10 HOH D 51 651 127 HOH HOH . T 10 HOH D 52 652 91 HOH HOH . T 10 HOH D 53 653 206 HOH HOH . T 10 HOH D 54 654 66 HOH HOH . T 10 HOH D 55 655 243 HOH HOH . U 10 HOH E 1 201 138 HOH HOH . U 10 HOH E 2 202 297 HOH HOH . U 10 HOH E 3 203 333 HOH HOH . U 10 HOH E 4 204 151 HOH HOH . U 10 HOH E 5 205 347 HOH HOH . U 10 HOH E 6 206 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . P 9 23.471 93.273 6.132 1 85.5 ? S DMS 504 D 1 HETATM 2 O O DMS . . . P 9 23.967 94.43 6.952 1 86.76 ? O DMS 504 D 1 HETATM 3 C C1 DMS . . . P 9 21.658 93.356 5.954 1 74.53 ? C1 DMS 504 D 1 HETATM 4 C C2 DMS . . . P 9 23.749 91.705 7.015 1 71.99 ? C2 DMS 504 D 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #