data_6XF9 # _model_server_result.job_id WkfwGYFhvmE76NrqLBsekw _model_server_result.datetime_utc '2024-12-21 14:27:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":503}' # _entry.id 6XF9 # _exptl.entry_id 6XF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XF9 _cell.length_a 134.987 _cell.length_b 224.042 _cell.length_c 192.27 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc2 A SG CYS 55 A CYS 55 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A ND1 HIS 130 A HIS 130 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc4 A SG CYS 136 A CYS 136 1_555 F ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 A SG CYS 191 A CYS 191 1_555 H ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc6 A SG CYS 192 A CYS 192 1_555 H ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc7 A SG CYS 296 A CYS 296 1_555 G ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc8 A SG CYS 299 A CYS 299 1_555 G ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc9 A ND1 HIS 366 A HIS 366 1_555 G ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc10 A SG CYS 373 A CYS 373 1_555 G ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc11 A SG CYS 415 A CYS 415 1_555 H ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc12 A NE2 HIS 452 A HIS 452 1_555 H ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc13 B SG CYS 52 B CYS 52 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc14 B SG CYS 55 B CYS 55 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc15 B ND1 HIS 130 B HIS 130 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc16 B SG CYS 136 B CYS 136 1_555 I ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc17 B SG CYS 191 B CYS 191 1_555 K ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc18 B SG CYS 192 B CYS 192 1_555 K ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc19 B SG CYS 296 B CYS 296 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc20 B SG CYS 299 B CYS 299 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc21 B ND1 HIS 366 B HIS 366 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc22 B SG CYS 373 B CYS 373 1_555 J ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc23 B SG CYS 415 B CYS 415 1_555 K ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc24 B NE2 HIS 452 B HIS 452 1_555 K ZN ZN . B ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc25 C SG CYS 52 C CYS 52 1_555 L ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc26 C SG CYS 55 C CYS 55 1_555 L ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc27 C ND1 HIS 130 C HIS 130 1_555 L ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc28 C SG CYS 136 C CYS 136 1_555 L ZN ZN . C ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc29 C SG CYS 191 C CYS 191 1_555 N ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc30 C SG CYS 192 C CYS 192 1_555 N ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc31 C SG CYS 296 C CYS 296 1_555 M ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc32 C SG CYS 299 C CYS 299 1_555 M ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc33 C ND1 HIS 366 C HIS 366 1_555 M ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc34 C SG CYS 373 C CYS 373 1_555 M ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc35 C SG CYS 415 C CYS 415 1_555 N ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc36 C NE2 HIS 452 C HIS 452 1_555 N ZN ZN . C ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc37 D SG CYS 52 D CYS 52 1_555 O ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc38 D SG CYS 55 D CYS 55 1_555 O ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc39 D ND1 HIS 130 D HIS 130 1_555 O ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc40 D SG CYS 136 D CYS 136 1_555 O ZN ZN . D ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc41 D SG CYS 191 D CYS 191 1_555 Q ZN ZN . D ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc42 D SG CYS 192 D CYS 192 1_555 Q ZN ZN . D ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc43 D SG CYS 296 D CYS 296 1_555 P ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc44 D SG CYS 299 D CYS 299 1_555 P ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc45 D ND1 HIS 366 D HIS 366 1_555 P ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc46 D SG CYS 373 D CYS 373 1_555 P ZN ZN . D ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc47 D SG CYS 415 D CYS 415 1_555 Q ZN ZN . D ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc48 D NE2 HIS 452 D HIS 452 1_555 Q ZN ZN . D ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc49 E SG CYS 52 E CYS 52 1_555 R ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc50 E SG CYS 55 E CYS 55 1_555 R ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc51 E ND1 HIS 130 E HIS 130 1_555 R ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc52 E SG CYS 136 E CYS 136 1_555 R ZN ZN . E ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc53 E SG CYS 191 E CYS 191 1_555 T ZN ZN . E ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc54 E SG CYS 192 E CYS 192 1_555 T ZN ZN . E ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc55 E SG CYS 296 E CYS 296 1_555 S ZN ZN . E ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc56 E SG CYS 299 E CYS 299 1_555 S ZN ZN . E ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc57 E ND1 HIS 366 E HIS 366 1_555 S ZN ZN . E ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc58 E SG CYS 373 E CYS 373 1_555 S ZN ZN . E ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc59 E SG CYS 415 E CYS 415 1_555 T ZN ZN . E ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc60 E NE2 HIS 452 E HIS 452 1_555 T ZN ZN . E ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XF9 _atom_sites.fract_transf_matrix[1][1] 0.007408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ZN A 1 501 1 ZN ZN . G 2 ZN A 1 502 2 ZN ZN . H 2 ZN A 1 503 3 ZN ZN . I 2 ZN B 1 501 4 ZN ZN . J 2 ZN B 1 502 5 ZN ZN . K 2 ZN B 1 503 6 ZN ZN . L 2 ZN C 1 501 7 ZN ZN . M 2 ZN C 1 502 8 ZN ZN . N 2 ZN C 1 503 9 ZN ZN . O 2 ZN D 1 501 10 ZN ZN . P 2 ZN D 1 502 11 ZN ZN . Q 2 ZN D 1 503 12 ZN ZN . R 2 ZN E 1 501 13 ZN ZN . S 2 ZN E 1 502 14 ZN ZN . T 2 ZN E 1 503 15 ZN ZN . U 3 HOH B 1 601 3 HOH HOH . V 3 HOH D 1 601 2 HOH HOH . V 3 HOH D 2 602 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 2 _atom_site.Cartn_x -90.456 _atom_site.Cartn_y 84.097 _atom_site.Cartn_z -10.974 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 503 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #