data_6XFI # _model_server_result.job_id l8jgantWiytlYR9n2Q6Sdw _model_server_result.datetime_utc '2024-10-13 12:16:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xfi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6XFI # _exptl.entry_id 6XFI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XFI _cell.length_a 129.84 _cell.length_b 129.84 _cell.length_c 81.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XFI _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 129.84 129.84 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 69 1_555 A SG CYS 28 A CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 34 A CYS 85 1_555 A SG CYS 177 A CYS 228 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.065 ? disulf ? disulf3 A SG CYS 34 A CYS 85 1_555 A SG CYS 177 A CYS 228 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.059 ? disulf ? disulf4 A SG CYS 385 A CYS 436 1_555 A SG CYS 386 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 439 A CYS 490 1_555 A SG CYS 527 A CYS 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 48 A ASN 99 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6XFI _atom_sites.fract_transf_matrix[1][1] 0.007702 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 601 600 UDP UDP . C 3 NAG A 1 602 701 NAG NAG . D 4 PO4 A 1 603 1 PO4 PO4 . E 4 PO4 A 1 604 2 PO4 PO4 . F 5 HOH A 1 701 57 HOH HOH . F 5 HOH A 2 702 74 HOH HOH . F 5 HOH A 3 703 157 HOH HOH . F 5 HOH A 4 704 168 HOH HOH . F 5 HOH A 5 705 64 HOH HOH . F 5 HOH A 6 706 84 HOH HOH . F 5 HOH A 7 707 108 HOH HOH . F 5 HOH A 8 708 163 HOH HOH . F 5 HOH A 9 709 155 HOH HOH . F 5 HOH A 10 710 29 HOH HOH . F 5 HOH A 11 711 137 HOH HOH . F 5 HOH A 12 712 129 HOH HOH . F 5 HOH A 13 713 67 HOH HOH . F 5 HOH A 14 714 131 HOH HOH . F 5 HOH A 15 715 139 HOH HOH . F 5 HOH A 16 716 135 HOH HOH . F 5 HOH A 17 717 58 HOH HOH . F 5 HOH A 18 718 104 HOH HOH . F 5 HOH A 19 719 27 HOH HOH . F 5 HOH A 20 720 45 HOH HOH . F 5 HOH A 21 721 44 HOH HOH . F 5 HOH A 22 722 100 HOH HOH . F 5 HOH A 23 723 51 HOH HOH . F 5 HOH A 24 724 133 HOH HOH . F 5 HOH A 25 725 162 HOH HOH . F 5 HOH A 26 726 10 HOH HOH . F 5 HOH A 27 727 128 HOH HOH . F 5 HOH A 28 728 16 HOH HOH . F 5 HOH A 29 729 122 HOH HOH . F 5 HOH A 30 730 143 HOH HOH . F 5 HOH A 31 731 23 HOH HOH . F 5 HOH A 32 732 50 HOH HOH . F 5 HOH A 33 733 111 HOH HOH . F 5 HOH A 34 734 146 HOH HOH . F 5 HOH A 35 735 36 HOH HOH . F 5 HOH A 36 736 178 HOH HOH . F 5 HOH A 37 737 106 HOH HOH . F 5 HOH A 38 738 151 HOH HOH . F 5 HOH A 39 739 22 HOH HOH . F 5 HOH A 40 740 31 HOH HOH . F 5 HOH A 41 741 43 HOH HOH . F 5 HOH A 42 742 76 HOH HOH . F 5 HOH A 43 743 126 HOH HOH . F 5 HOH A 44 744 32 HOH HOH . F 5 HOH A 45 745 42 HOH HOH . F 5 HOH A 46 746 72 HOH HOH . F 5 HOH A 47 747 101 HOH HOH . F 5 HOH A 48 748 53 HOH HOH . F 5 HOH A 49 749 136 HOH HOH . F 5 HOH A 50 750 39 HOH HOH . F 5 HOH A 51 751 20 HOH HOH . F 5 HOH A 52 752 26 HOH HOH . F 5 HOH A 53 753 40 HOH HOH . F 5 HOH A 54 754 158 HOH HOH . F 5 HOH A 55 755 6 HOH HOH . F 5 HOH A 56 756 112 HOH HOH . F 5 HOH A 57 757 99 HOH HOH . F 5 HOH A 58 758 164 HOH HOH . F 5 HOH A 59 759 60 HOH HOH . F 5 HOH A 60 760 11 HOH HOH . F 5 HOH A 61 761 35 HOH HOH . F 5 HOH A 62 762 2 HOH HOH . F 5 HOH A 63 763 18 HOH HOH . F 5 HOH A 64 764 41 HOH HOH . F 5 HOH A 65 765 65 HOH HOH . F 5 HOH A 66 766 69 HOH HOH . F 5 HOH A 67 767 17 HOH HOH . F 5 HOH A 68 768 7 HOH HOH . F 5 HOH A 69 769 145 HOH HOH . F 5 HOH A 70 770 172 HOH HOH . F 5 HOH A 71 771 150 HOH HOH . F 5 HOH A 72 772 1 HOH HOH . F 5 HOH A 73 773 171 HOH HOH . F 5 HOH A 74 774 169 HOH HOH . F 5 HOH A 75 775 33 HOH HOH . F 5 HOH A 76 776 61 HOH HOH . F 5 HOH A 77 777 174 HOH HOH . F 5 HOH A 78 778 4 HOH HOH . F 5 HOH A 79 779 15 HOH HOH . F 5 HOH A 80 780 94 HOH HOH . F 5 HOH A 81 781 34 HOH HOH . F 5 HOH A 82 782 186 HOH HOH . F 5 HOH A 83 783 75 HOH HOH . F 5 HOH A 84 784 81 HOH HOH . F 5 HOH A 85 785 25 HOH HOH . F 5 HOH A 86 786 120 HOH HOH . F 5 HOH A 87 787 13 HOH HOH . F 5 HOH A 88 788 102 HOH HOH . F 5 HOH A 89 789 121 HOH HOH . F 5 HOH A 90 790 9 HOH HOH . F 5 HOH A 91 791 192 HOH HOH . F 5 HOH A 92 792 98 HOH HOH . F 5 HOH A 93 793 21 HOH HOH . F 5 HOH A 94 794 124 HOH HOH . F 5 HOH A 95 795 177 HOH HOH . F 5 HOH A 96 796 144 HOH HOH . F 5 HOH A 97 797 52 HOH HOH . F 5 HOH A 98 798 138 HOH HOH . F 5 HOH A 99 799 12 HOH HOH . F 5 HOH A 100 800 66 HOH HOH . F 5 HOH A 101 801 181 HOH HOH . F 5 HOH A 102 802 91 HOH HOH . F 5 HOH A 103 803 48 HOH HOH . F 5 HOH A 104 804 28 HOH HOH . F 5 HOH A 105 805 153 HOH HOH . F 5 HOH A 106 806 110 HOH HOH . F 5 HOH A 107 807 37 HOH HOH . F 5 HOH A 108 808 49 HOH HOH . F 5 HOH A 109 809 107 HOH HOH . F 5 HOH A 110 810 19 HOH HOH . F 5 HOH A 111 811 185 HOH HOH . F 5 HOH A 112 812 30 HOH HOH . F 5 HOH A 113 813 14 HOH HOH . F 5 HOH A 114 814 55 HOH HOH . F 5 HOH A 115 815 5 HOH HOH . F 5 HOH A 116 816 152 HOH HOH . F 5 HOH A 117 817 73 HOH HOH . F 5 HOH A 118 818 130 HOH HOH . F 5 HOH A 119 819 70 HOH HOH . F 5 HOH A 120 820 46 HOH HOH . F 5 HOH A 121 821 68 HOH HOH . F 5 HOH A 122 822 114 HOH HOH . F 5 HOH A 123 823 59 HOH HOH . F 5 HOH A 124 824 24 HOH HOH . F 5 HOH A 125 825 180 HOH HOH . F 5 HOH A 126 826 127 HOH HOH . F 5 HOH A 127 827 92 HOH HOH . F 5 HOH A 128 828 119 HOH HOH . F 5 HOH A 129 829 147 HOH HOH . F 5 HOH A 130 830 3 HOH HOH . F 5 HOH A 131 831 77 HOH HOH . F 5 HOH A 132 832 86 HOH HOH . F 5 HOH A 133 833 176 HOH HOH . F 5 HOH A 134 834 148 HOH HOH . F 5 HOH A 135 835 56 HOH HOH . F 5 HOH A 136 836 113 HOH HOH . F 5 HOH A 137 837 193 HOH HOH . F 5 HOH A 138 838 173 HOH HOH . F 5 HOH A 139 839 85 HOH HOH . F 5 HOH A 140 840 117 HOH HOH . F 5 HOH A 141 841 8 HOH HOH . F 5 HOH A 142 842 82 HOH HOH . F 5 HOH A 143 843 115 HOH HOH . F 5 HOH A 144 844 140 HOH HOH . F 5 HOH A 145 845 105 HOH HOH . F 5 HOH A 146 846 62 HOH HOH . F 5 HOH A 147 847 167 HOH HOH . F 5 HOH A 148 848 179 HOH HOH . F 5 HOH A 149 849 184 HOH HOH . F 5 HOH A 150 850 93 HOH HOH . F 5 HOH A 151 851 118 HOH HOH . F 5 HOH A 152 852 38 HOH HOH . F 5 HOH A 153 853 141 HOH HOH . F 5 HOH A 154 854 96 HOH HOH . F 5 HOH A 155 855 187 HOH HOH . F 5 HOH A 156 856 87 HOH HOH . F 5 HOH A 157 857 195 HOH HOH . F 5 HOH A 158 858 194 HOH HOH . F 5 HOH A 159 859 183 HOH HOH . F 5 HOH A 160 860 189 HOH HOH . F 5 HOH A 161 861 149 HOH HOH . F 5 HOH A 162 862 63 HOH HOH . F 5 HOH A 163 863 190 HOH HOH . F 5 HOH A 164 864 156 HOH HOH . F 5 HOH A 165 865 123 HOH HOH . F 5 HOH A 166 866 97 HOH HOH . F 5 HOH A 167 867 132 HOH HOH . F 5 HOH A 168 868 83 HOH HOH . F 5 HOH A 169 869 175 HOH HOH . F 5 HOH A 170 870 88 HOH HOH . F 5 HOH A 171 871 161 HOH HOH . F 5 HOH A 172 872 191 HOH HOH . F 5 HOH A 173 873 47 HOH HOH . F 5 HOH A 174 874 154 HOH HOH . F 5 HOH A 175 875 159 HOH HOH . F 5 HOH A 176 876 80 HOH HOH . F 5 HOH A 177 877 109 HOH HOH . F 5 HOH A 178 878 95 HOH HOH . F 5 HOH A 179 879 116 HOH HOH . F 5 HOH A 180 880 89 HOH HOH . F 5 HOH A 181 881 103 HOH HOH . F 5 HOH A 182 882 90 HOH HOH . F 5 HOH A 183 883 125 HOH HOH . F 5 HOH A 184 884 54 HOH HOH . F 5 HOH A 185 885 160 HOH HOH . F 5 HOH A 186 886 78 HOH HOH . F 5 HOH A 187 887 165 HOH HOH . F 5 HOH A 188 888 196 HOH HOH . F 5 HOH A 189 889 182 HOH HOH . F 5 HOH A 190 890 71 HOH HOH . F 5 HOH A 191 891 79 HOH HOH . F 5 HOH A 192 892 166 HOH HOH . F 5 HOH A 193 893 170 HOH HOH . F 5 HOH A 194 894 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 57.319 34.546 -4.183 1 79.43 ? C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . C 3 57.251 34.821 -5.664 1 83.44 ? C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . C 3 56.68 36.206 -5.877 1 87.59 ? C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . C 3 55.287 36.267 -5.26 1 91.88 ? C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . C 3 55.267 35.761 -3.805 1 85.09 ? C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . C 3 53.857 35.54 -3.294 1 75.02 ? C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . C 3 58.923 33.508 -6.876 1 67.93 ? C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . C 3 60.284 33.494 -7.506 1 75.53 ? C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . C 3 58.542 34.665 -6.317 1 68.27 ? N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . C 3 56.624 36.507 -7.267 1 97.46 ? O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . C 3 54.81 37.608 -5.287 1 97.56 ? O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . C 3 55.981 34.516 -3.642 1 84.03 ? O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . C 3 53.699 34.3 -2.617 1 68.15 ? O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . C 3 58.203 32.514 -6.864 1 77.92 ? O7 NAG 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 545 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #