data_6XFN # _model_server_result.job_id TU7o3DW6p8q_ZKp2WQphFg _model_server_result.datetime_utc '2025-01-28 03:56:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6XFN # _exptl.entry_id 6XFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.86 _cell.angle_gamma 90 _cell.entry_id 6XFN _cell.length_a 114.566 _cell.length_b 54.317 _cell.length_c 44.492 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 147 A CYS 145 1_555 B C23 V1V 3 B V1V 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.712 ? covale ? covale2 B C07 UZ7 1 B UZ7 1 1_555 B N LEU 2 B LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 B C LEU 2 B LEU 2 1_555 B N V1V 3 B V1V 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale4 B C V1V 3 B V1V 3 1_555 B N APY 4 B APY 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 145 n n C1 C2 GOL sing 146 n n C1 H11 GOL sing 147 n n C1 H12 GOL sing 148 n n O1 HO1 GOL sing 149 n n C2 O2 GOL sing 150 n n C2 C3 GOL sing 151 n n C2 H2 GOL sing 152 n n O2 HO2 GOL sing 153 n n C3 O3 GOL sing 154 n n C3 H31 GOL sing 155 n n C3 H32 GOL sing 156 n n O3 HO3 GOL sing 157 n n # _atom_sites.entry_id 6XFN _atom_sites.fract_transf_matrix[1][1] 0.008729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022885 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 501 501 GOL GOL . D 4 HOH A 1 601 295 HOH HOH . D 4 HOH A 2 602 275 HOH HOH . D 4 HOH A 3 603 271 HOH HOH . D 4 HOH A 4 604 68 HOH HOH . D 4 HOH A 5 605 296 HOH HOH . D 4 HOH A 6 606 75 HOH HOH . D 4 HOH A 7 607 67 HOH HOH . D 4 HOH A 8 608 281 HOH HOH . D 4 HOH A 9 609 47 HOH HOH . D 4 HOH A 10 610 46 HOH HOH . D 4 HOH A 11 611 7 HOH HOH . D 4 HOH A 12 612 116 HOH HOH . D 4 HOH A 13 613 290 HOH HOH . D 4 HOH A 14 614 95 HOH HOH . D 4 HOH A 15 615 33 HOH HOH . D 4 HOH A 16 616 178 HOH HOH . D 4 HOH A 17 617 303 HOH HOH . D 4 HOH A 18 618 78 HOH HOH . D 4 HOH A 19 619 195 HOH HOH . D 4 HOH A 20 620 84 HOH HOH . D 4 HOH A 21 621 26 HOH HOH . D 4 HOH A 22 622 49 HOH HOH . D 4 HOH A 23 623 88 HOH HOH . D 4 HOH A 24 624 64 HOH HOH . D 4 HOH A 25 625 268 HOH HOH . D 4 HOH A 26 626 66 HOH HOH . D 4 HOH A 27 627 153 HOH HOH . D 4 HOH A 28 628 86 HOH HOH . D 4 HOH A 29 629 13 HOH HOH . D 4 HOH A 30 630 36 HOH HOH . D 4 HOH A 31 631 92 HOH HOH . D 4 HOH A 32 632 89 HOH HOH . D 4 HOH A 33 633 38 HOH HOH . D 4 HOH A 34 634 176 HOH HOH . D 4 HOH A 35 635 124 HOH HOH . D 4 HOH A 36 636 31 HOH HOH . D 4 HOH A 37 637 63 HOH HOH . D 4 HOH A 38 638 269 HOH HOH . D 4 HOH A 39 639 18 HOH HOH . D 4 HOH A 40 640 1 HOH HOH . D 4 HOH A 41 641 114 HOH HOH . D 4 HOH A 42 642 34 HOH HOH . D 4 HOH A 43 643 56 HOH HOH . D 4 HOH A 44 644 39 HOH HOH . D 4 HOH A 45 645 25 HOH HOH . D 4 HOH A 46 646 113 HOH HOH . D 4 HOH A 47 647 136 HOH HOH . D 4 HOH A 48 648 60 HOH HOH . D 4 HOH A 49 649 192 HOH HOH . D 4 HOH A 50 650 117 HOH HOH . D 4 HOH A 51 651 134 HOH HOH . D 4 HOH A 52 652 277 HOH HOH . D 4 HOH A 53 653 6 HOH HOH . D 4 HOH A 54 654 45 HOH HOH . D 4 HOH A 55 655 226 HOH HOH . D 4 HOH A 56 656 12 HOH HOH . D 4 HOH A 57 657 193 HOH HOH . D 4 HOH A 58 658 28 HOH HOH . D 4 HOH A 59 659 2 HOH HOH . D 4 HOH A 60 660 3 HOH HOH . D 4 HOH A 61 661 14 HOH HOH . D 4 HOH A 62 662 72 HOH HOH . D 4 HOH A 63 663 27 HOH HOH . D 4 HOH A 64 664 59 HOH HOH . D 4 HOH A 65 665 58 HOH HOH . D 4 HOH A 66 666 121 HOH HOH . D 4 HOH A 67 667 61 HOH HOH . D 4 HOH A 68 668 43 HOH HOH . D 4 HOH A 69 669 130 HOH HOH . D 4 HOH A 70 670 110 HOH HOH . D 4 HOH A 71 671 147 HOH HOH . D 4 HOH A 72 672 167 HOH HOH . D 4 HOH A 73 673 97 HOH HOH . D 4 HOH A 74 674 87 HOH HOH . D 4 HOH A 75 675 90 HOH HOH . D 4 HOH A 76 676 77 HOH HOH . D 4 HOH A 77 677 40 HOH HOH . D 4 HOH A 78 678 280 HOH HOH . D 4 HOH A 79 679 133 HOH HOH . D 4 HOH A 80 680 62 HOH HOH . D 4 HOH A 81 681 11 HOH HOH . D 4 HOH A 82 682 185 HOH HOH . D 4 HOH A 83 683 52 HOH HOH . D 4 HOH A 84 684 51 HOH HOH . D 4 HOH A 85 685 270 HOH HOH . D 4 HOH A 86 686 80 HOH HOH . D 4 HOH A 87 687 272 HOH HOH . D 4 HOH A 88 688 71 HOH HOH . D 4 HOH A 89 689 146 HOH HOH . D 4 HOH A 90 690 20 HOH HOH . D 4 HOH A 91 691 85 HOH HOH . D 4 HOH A 92 692 109 HOH HOH . D 4 HOH A 93 693 105 HOH HOH . D 4 HOH A 94 694 168 HOH HOH . D 4 HOH A 95 695 276 HOH HOH . D 4 HOH A 96 696 19 HOH HOH . D 4 HOH A 97 697 35 HOH HOH . D 4 HOH A 98 698 9 HOH HOH . D 4 HOH A 99 699 81 HOH HOH . D 4 HOH A 100 700 10 HOH HOH . D 4 HOH A 101 701 4 HOH HOH . D 4 HOH A 102 702 5 HOH HOH . D 4 HOH A 103 703 57 HOH HOH . D 4 HOH A 104 704 181 HOH HOH . D 4 HOH A 105 705 29 HOH HOH . D 4 HOH A 106 706 279 HOH HOH . D 4 HOH A 107 707 166 HOH HOH . D 4 HOH A 108 708 73 HOH HOH . D 4 HOH A 109 709 293 HOH HOH . D 4 HOH A 110 710 257 HOH HOH . D 4 HOH A 111 711 163 HOH HOH . D 4 HOH A 112 712 15 HOH HOH . D 4 HOH A 113 713 107 HOH HOH . D 4 HOH A 114 714 138 HOH HOH . D 4 HOH A 115 715 69 HOH HOH . D 4 HOH A 116 716 65 HOH HOH . D 4 HOH A 117 717 79 HOH HOH . D 4 HOH A 118 718 32 HOH HOH . D 4 HOH A 119 719 23 HOH HOH . D 4 HOH A 120 720 98 HOH HOH . D 4 HOH A 121 721 284 HOH HOH . D 4 HOH A 122 722 131 HOH HOH . D 4 HOH A 123 723 278 HOH HOH . D 4 HOH A 124 724 70 HOH HOH . D 4 HOH A 125 725 8 HOH HOH . D 4 HOH A 126 726 150 HOH HOH . D 4 HOH A 127 727 17 HOH HOH . D 4 HOH A 128 728 292 HOH HOH . D 4 HOH A 129 729 112 HOH HOH . D 4 HOH A 130 730 242 HOH HOH . D 4 HOH A 131 731 83 HOH HOH . D 4 HOH A 132 732 288 HOH HOH . D 4 HOH A 133 733 48 HOH HOH . D 4 HOH A 134 734 259 HOH HOH . D 4 HOH A 135 735 265 HOH HOH . D 4 HOH A 136 736 285 HOH HOH . D 4 HOH A 137 737 111 HOH HOH . D 4 HOH A 138 738 300 HOH HOH . D 4 HOH A 139 739 253 HOH HOH . D 4 HOH A 140 740 287 HOH HOH . D 4 HOH A 141 741 267 HOH HOH . D 4 HOH A 142 742 118 HOH HOH . D 4 HOH A 143 743 101 HOH HOH . D 4 HOH A 144 744 251 HOH HOH . D 4 HOH A 145 745 291 HOH HOH . D 4 HOH A 146 746 250 HOH HOH . D 4 HOH A 147 747 252 HOH HOH . D 4 HOH A 148 748 302 HOH HOH . D 4 HOH A 149 749 289 HOH HOH . D 4 HOH A 150 750 297 HOH HOH . D 4 HOH A 151 751 164 HOH HOH . D 4 HOH A 152 752 299 HOH HOH . D 4 HOH A 153 753 274 HOH HOH . D 4 HOH A 154 754 301 HOH HOH . D 4 HOH A 155 755 282 HOH HOH . D 4 HOH A 156 756 96 HOH HOH . D 4 HOH A 157 757 298 HOH HOH . D 4 HOH A 158 758 155 HOH HOH . D 4 HOH A 159 759 103 HOH HOH . D 4 HOH A 160 760 304 HOH HOH . D 4 HOH A 161 761 256 HOH HOH . D 4 HOH A 162 762 119 HOH HOH . D 4 HOH A 163 763 258 HOH HOH . D 4 HOH A 164 764 283 HOH HOH . D 4 HOH A 165 765 286 HOH HOH . D 4 HOH A 166 766 127 HOH HOH . E 4 HOH B 1 101 273 HOH HOH . E 4 HOH B 2 102 255 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 15.503 -28.203 26.129 1 56.09 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 3 15.539 -27.911 24.731 1 52.28 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 3 16.421 -27.306 26.938 1 58.42 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 3 17.757 -27.408 26.447 1 58.38 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 3 16.007 -25.848 26.941 1 58.06 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 3 14.694 -25.67 27.472 1 60.21 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #