data_6XFR # _model_server_result.job_id ADUjf7pnpLoDtlLAbnCCGA _model_server_result.datetime_utc '2024-11-15 09:27:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":301}' # _entry.id 6XFR # _exptl.entry_id 6XFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XFR _cell.length_a 97.941 _cell.length_b 97.941 _cell.length_c 103.237 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 78 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 A ND1 HIS 80 A HIS 80 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 A OD1 ASP 82 A ASP 82 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A NE2 HIS 141 A HIS 141 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc5 A SG CYS 160 A CYS 160 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A NE2 HIS 202 A HIS 202 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 D O8 EPE . A EPE 302 1_555 I ZN ZN . A ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc8 F ZN ZN . A ZN 304 1_555 Z O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc9 L NA NA . A NA 310 1_555 B O TRP 205 B TRP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc10 B NE2 HIS 78 B HIS 78 1_555 N ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc11 B ND1 HIS 80 B HIS 80 1_555 N ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc12 B OD2 ASP 82 B ASP 82 1_555 O ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc13 B O GLN 131 B GLN 131 1_555 T ZN ZN . B ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc14 B NE2 HIS 141 B HIS 141 1_555 N ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc15 B SG CYS 160 B CYS 160 1_555 O ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc16 B NE2 HIS 202 B HIS 202 1_555 O ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc17 O ZN ZN . B ZN 303 1_555 AA O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 6XFR _atom_sites.fract_transf_matrix[1][1] 0.01021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EPE A 1 301 301 EPE EPE . D 2 EPE A 1 302 501 EPE EPE . E 2 EPE A 1 303 601 EPE EPE . F 3 ZN A 1 304 1 ZN ZN . G 3 ZN A 1 305 2 ZN ZN . H 3 ZN A 1 306 6 ZN ZN . I 3 ZN A 1 307 7 ZN ZN . J 3 ZN A 1 308 9 ZN ZN . K 3 ZN A 1 309 14 ZN ZN . L 4 NA A 1 310 1 NA NA . M 2 EPE B 1 301 301 EPE EPE . N 3 ZN B 1 302 3 ZN ZN . O 3 ZN B 1 303 4 ZN ZN . P 3 ZN B 1 304 8 ZN ZN . Q 3 ZN B 1 305 10 ZN ZN . R 3 ZN B 1 306 11 ZN ZN . S 3 ZN B 1 307 12 ZN ZN . T 3 ZN B 1 308 13 ZN ZN . U 3 ZN B 1 309 15 ZN ZN . V 3 ZN B 1 310 16 ZN ZN . W 3 ZN B 1 311 17 ZN ZN . X 5 SO4 B 1 312 2 SO4 SO4 . Y 4 NA B 1 313 2 NA NA . Z 6 HOH A 1 401 21 HOH HOH . Z 6 HOH A 2 402 24 HOH HOH . Z 6 HOH A 3 403 22 HOH HOH . Z 6 HOH A 4 404 16 HOH HOH . Z 6 HOH A 5 405 10 HOH HOH . Z 6 HOH A 6 406 23 HOH HOH . Z 6 HOH A 7 407 5 HOH HOH . Z 6 HOH A 8 408 6 HOH HOH . Z 6 HOH A 9 409 8 HOH HOH . Z 6 HOH A 10 410 9 HOH HOH . Z 6 HOH A 11 411 15 HOH HOH . Z 6 HOH A 12 412 2 HOH HOH . Z 6 HOH A 13 413 25 HOH HOH . Z 6 HOH A 14 414 13 HOH HOH . AA 6 HOH B 1 401 12 HOH HOH . AA 6 HOH B 2 402 26 HOH HOH . AA 6 HOH B 3 403 11 HOH HOH . AA 6 HOH B 4 404 3 HOH HOH . AA 6 HOH B 5 405 1 HOH HOH . AA 6 HOH B 6 406 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . M 2 46.742 2.17 36.045 1 50.91 ? N1 EPE 301 B 1 HETATM 2 C C2 EPE . . . M 2 47.016 3.284 36.973 1 50.32 ? C2 EPE 301 B 1 HETATM 3 C C3 EPE . . . M 2 47.083 2.827 38.428 1 53.1 ? C3 EPE 301 B 1 HETATM 4 N N4 EPE . . . M 2 45.963 1.981 38.794 1 56.8 ? N4 EPE 301 B 1 HETATM 5 C C5 EPE . . . M 2 45.524 1 37.809 1 53.5 ? C5 EPE 301 B 1 HETATM 6 C C6 EPE . . . M 2 45.461 1.541 36.385 1 49.77 ? C6 EPE 301 B 1 HETATM 7 C C7 EPE . . . M 2 45.749 1.679 40.208 1 56.02 ? C7 EPE 301 B 1 HETATM 8 C C8 EPE . . . M 2 44.285 1.363 40.519 1 66.76 ? C8 EPE 301 B 1 HETATM 9 O O8 EPE . . . M 2 44.106 0.834 41.822 1 74.8 ? O8 EPE 301 B 1 HETATM 10 C C9 EPE . . . M 2 46.618 2.78 34.718 1 55.04 ? C9 EPE 301 B 1 HETATM 11 C C10 EPE . . . M 2 47.771 2.439 33.779 1 50.8 ? C10 EPE 301 B 1 HETATM 12 S S EPE . . . M 2 47.666 3.343 32.209 1 54.09 ? S EPE 301 B 1 HETATM 13 O O1S EPE . . . M 2 46.285 3.579 31.726 1 45.13 ? O1S EPE 301 B 1 HETATM 14 O O2S EPE . . . M 2 48.348 2.52 31.215 1 66.57 ? O2S EPE 301 B 1 HETATM 15 O O3S EPE . . . M 2 48.398 4.596 32.368 1 47.29 ? O3S EPE 301 B 1 HETATM 16 H H21 EPE . . . M 2 46.232 4.034 36.871 1 60.29 ? H21 EPE 301 B 1 HETATM 17 H H22 EPE . . . M 2 47.963 3.75 36.702 1 60.29 ? H22 EPE 301 B 1 HETATM 18 H H31 EPE . . . M 2 47.095 3.703 39.076 1 63.62 ? H31 EPE 301 B 1 HETATM 19 H H32 EPE . . . M 2 48.011 2.279 38.587 1 63.62 ? H32 EPE 301 B 1 HETATM 20 H H51 EPE . . . M 2 44.534 0.641 38.091 1 64.11 ? H51 EPE 301 B 1 HETATM 21 H H52 EPE . . . M 2 46.208 0.152 37.832 1 64.11 ? H52 EPE 301 B 1 HETATM 22 H H61 EPE . . . M 2 44.656 2.271 36.3 1 59.63 ? H61 EPE 301 B 1 HETATM 23 H H62 EPE . . . M 2 45.251 0.729 35.689 1 59.63 ? H62 EPE 301 B 1 HETATM 24 H H71 EPE . . . M 2 46.065 2.533 40.807 1 67.13 ? H71 EPE 301 B 1 HETATM 25 H H72 EPE . . . M 2 46.366 0.826 40.489 1 67.13 ? H72 EPE 301 B 1 HETATM 26 H H81 EPE . . . M 2 43.914 0.645 39.788 1 80.02 ? H81 EPE 301 B 1 HETATM 27 H H82 EPE . . . M 2 43.696 2.275 40.421 1 80.02 ? H82 EPE 301 B 1 HETATM 28 H HO8 EPE . . . M 2 44.967 0.818 42.289 1 89.66 ? HO8 EPE 301 B 1 HETATM 29 H H91 EPE . . . M 2 45.685 2.446 34.264 1 65.95 ? H91 EPE 301 B 1 HETATM 30 H H92 EPE . . . M 2 46.566 3.863 34.832 1 65.95 ? H92 EPE 301 B 1 HETATM 31 H H101 EPE . . . M 2 48.715 2.68 34.269 1 60.87 ? H101 EPE 301 B 1 HETATM 32 H H102 EPE . . . M 2 47.763 1.368 33.577 1 60.87 ? H102 EPE 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #