data_6XFR # _model_server_result.job_id 4hRzo5sSWO4Fexd7Ch8U_A _model_server_result.datetime_utc '2024-11-15 09:26:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":313}' # _entry.id 6XFR # _exptl.entry_id 6XFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XFR _cell.length_a 97.941 _cell.length_b 97.941 _cell.length_c 103.237 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 L N N ? 4 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 78 A HIS 78 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 A ND1 HIS 80 A HIS 80 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc3 A OD1 ASP 82 A ASP 82 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 A NE2 HIS 141 A HIS 141 1_555 G ZN ZN . A ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc5 A SG CYS 160 A CYS 160 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A NE2 HIS 202 A HIS 202 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc7 D O8 EPE . A EPE 302 1_555 I ZN ZN . A ZN 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc8 F ZN ZN . A ZN 304 1_555 Z O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc9 L NA NA . A NA 310 1_555 B O TRP 205 B TRP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc10 B NE2 HIS 78 B HIS 78 1_555 N ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc11 B ND1 HIS 80 B HIS 80 1_555 N ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc12 B OD2 ASP 82 B ASP 82 1_555 O ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc13 B O GLN 131 B GLN 131 1_555 T ZN ZN . B ZN 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc14 B NE2 HIS 141 B HIS 141 1_555 N ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc15 B SG CYS 160 B CYS 160 1_555 O ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc16 B NE2 HIS 202 B HIS 202 1_555 O ZN ZN . B ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc17 O ZN ZN . B ZN 303 1_555 AA O HOH . B HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XFR _atom_sites.fract_transf_matrix[1][1] 0.01021 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EPE A 1 301 301 EPE EPE . D 2 EPE A 1 302 501 EPE EPE . E 2 EPE A 1 303 601 EPE EPE . F 3 ZN A 1 304 1 ZN ZN . G 3 ZN A 1 305 2 ZN ZN . H 3 ZN A 1 306 6 ZN ZN . I 3 ZN A 1 307 7 ZN ZN . J 3 ZN A 1 308 9 ZN ZN . K 3 ZN A 1 309 14 ZN ZN . L 4 NA A 1 310 1 NA NA . M 2 EPE B 1 301 301 EPE EPE . N 3 ZN B 1 302 3 ZN ZN . O 3 ZN B 1 303 4 ZN ZN . P 3 ZN B 1 304 8 ZN ZN . Q 3 ZN B 1 305 10 ZN ZN . R 3 ZN B 1 306 11 ZN ZN . S 3 ZN B 1 307 12 ZN ZN . T 3 ZN B 1 308 13 ZN ZN . U 3 ZN B 1 309 15 ZN ZN . V 3 ZN B 1 310 16 ZN ZN . W 3 ZN B 1 311 17 ZN ZN . X 5 SO4 B 1 312 2 SO4 SO4 . Y 4 NA B 1 313 2 NA NA . Z 6 HOH A 1 401 21 HOH HOH . Z 6 HOH A 2 402 24 HOH HOH . Z 6 HOH A 3 403 22 HOH HOH . Z 6 HOH A 4 404 16 HOH HOH . Z 6 HOH A 5 405 10 HOH HOH . Z 6 HOH A 6 406 23 HOH HOH . Z 6 HOH A 7 407 5 HOH HOH . Z 6 HOH A 8 408 6 HOH HOH . Z 6 HOH A 9 409 8 HOH HOH . Z 6 HOH A 10 410 9 HOH HOH . Z 6 HOH A 11 411 15 HOH HOH . Z 6 HOH A 12 412 2 HOH HOH . Z 6 HOH A 13 413 25 HOH HOH . Z 6 HOH A 14 414 13 HOH HOH . AA 6 HOH B 1 401 12 HOH HOH . AA 6 HOH B 2 402 26 HOH HOH . AA 6 HOH B 3 403 11 HOH HOH . AA 6 HOH B 4 404 3 HOH HOH . AA 6 HOH B 5 405 1 HOH HOH . AA 6 HOH B 6 406 20 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Y _atom_site.label_entity_id 4 _atom_site.Cartn_x 46.537 _atom_site.Cartn_y 16.193 _atom_site.Cartn_z 51.744 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 134.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 313 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #