data_6XFS
#
_model_server_result.job_id            PTsT8L4C0bLAnQ70Z4pcaw 
_model_server_result.datetime_utc      '2024-11-24 04:47:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xfs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":503}' 
#
_entry.id    6XFS 
#
_exptl.entry_id    6XFS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.98 
_cell.angle_gamma         90 
_cell.entry_id            6XFS 
_cell.length_a            46.915 
_cell.length_b            170.299 
_cell.length_c            89.947 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XFS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,P 1 1 
B,H,I,J,Q 2 1 
C,K,L,R 3 1 
D,M,N,O,S 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 64 A SER 91 1_555 E C7 TBE . A TBE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale2 B OG SER 64 B SER 91 1_555 H C7 TBE . B TBE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale3 C OG SER 64 C SER 91 1_555 L C7 TBE . C TBE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale4 D OG SER 64 D SER 91 1_555 M C7 TBE . D TBE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     6XFS 
_atom_sites.fract_transf_matrix[1][1]    0.021315 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000007 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011118 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 TBE A 1 501 501 TBE TBE . 
F 3 EDO A 1 502 2 EDO EDO . 
G 3 EDO A 1 503 4 EDO EDO . 
H 2 TBE B 1 501 501 TBE TBE . 
I 4 PGE B 1 502 601 PGE PGE . 
J 3 EDO B 1 503 1 EDO EDO . 
K 5 PEG C 1 401 401 PEG PEG . 
L 2 TBE C 1 402 501 TBE TBE . 
M 2 TBE D 1 501 501 TBE TBE . 
N 4 PGE D 1 502 601 PGE PGE . 
O 3 EDO D 1 503 3 EDO EDO . 
P 6 HOH A 1 601 42 HOH HOH . 
P 6 HOH A 2 602 32 HOH HOH . 
P 6 HOH A 3 603 18 HOH HOH . 
P 6 HOH A 4 604 38 HOH HOH . 
P 6 HOH A 5 605 53 HOH HOH . 
P 6 HOH A 6 606 17 HOH HOH . 
P 6 HOH A 7 607 29 HOH HOH . 
P 6 HOH A 8 608 26 HOH HOH . 
P 6 HOH A 9 609 8 HOH HOH . 
P 6 HOH A 10 610 6 HOH HOH . 
P 6 HOH A 11 611 65 HOH HOH . 
P 6 HOH A 12 612 79 HOH HOH . 
P 6 HOH A 13 613 11 HOH HOH . 
P 6 HOH A 14 614 9 HOH HOH . 
P 6 HOH A 15 615 87 HOH HOH . 
P 6 HOH A 16 616 41 HOH HOH . 
P 6 HOH A 17 617 39 HOH HOH . 
P 6 HOH A 18 618 77 HOH HOH . 
Q 6 HOH B 1 601 88 HOH HOH . 
Q 6 HOH B 2 602 52 HOH HOH . 
Q 6 HOH B 3 603 35 HOH HOH . 
Q 6 HOH B 4 604 71 HOH HOH . 
Q 6 HOH B 5 605 23 HOH HOH . 
Q 6 HOH B 6 606 40 HOH HOH . 
Q 6 HOH B 7 607 75 HOH HOH . 
Q 6 HOH B 8 608 61 HOH HOH . 
Q 6 HOH B 9 609 72 HOH HOH . 
Q 6 HOH B 10 610 56 HOH HOH . 
Q 6 HOH B 11 611 60 HOH HOH . 
Q 6 HOH B 12 612 83 HOH HOH . 
Q 6 HOH B 13 613 37 HOH HOH . 
Q 6 HOH B 14 614 59 HOH HOH . 
Q 6 HOH B 15 615 10 HOH HOH . 
Q 6 HOH B 16 616 36 HOH HOH . 
Q 6 HOH B 17 617 86 HOH HOH . 
Q 6 HOH B 18 618 47 HOH HOH . 
Q 6 HOH B 19 619 46 HOH HOH . 
Q 6 HOH B 20 620 22 HOH HOH . 
Q 6 HOH B 21 621 14 HOH HOH . 
Q 6 HOH B 22 622 44 HOH HOH . 
Q 6 HOH B 23 623 51 HOH HOH . 
Q 6 HOH B 24 624 45 HOH HOH . 
Q 6 HOH B 25 625 48 HOH HOH . 
R 6 HOH C 1 501 25 HOH HOH . 
R 6 HOH C 2 502 12 HOH HOH . 
R 6 HOH C 3 503 63 HOH HOH . 
R 6 HOH C 4 504 50 HOH HOH . 
R 6 HOH C 5 505 73 HOH HOH . 
R 6 HOH C 6 506 67 HOH HOH . 
R 6 HOH C 7 507 58 HOH HOH . 
R 6 HOH C 8 508 24 HOH HOH . 
R 6 HOH C 9 509 13 HOH HOH . 
R 6 HOH C 10 510 4 HOH HOH . 
R 6 HOH C 11 511 74 HOH HOH . 
R 6 HOH C 12 512 64 HOH HOH . 
R 6 HOH C 13 513 5 HOH HOH . 
R 6 HOH C 14 514 84 HOH HOH . 
R 6 HOH C 15 515 15 HOH HOH . 
R 6 HOH C 16 516 85 HOH HOH . 
R 6 HOH C 17 517 7 HOH HOH . 
R 6 HOH C 18 518 68 HOH HOH . 
S 6 HOH D 1 601 76 HOH HOH . 
S 6 HOH D 2 602 30 HOH HOH . 
S 6 HOH D 3 603 20 HOH HOH . 
S 6 HOH D 4 604 28 HOH HOH . 
S 6 HOH D 5 605 57 HOH HOH . 
S 6 HOH D 6 606 33 HOH HOH . 
S 6 HOH D 7 607 78 HOH HOH . 
S 6 HOH D 8 608 16 HOH HOH . 
S 6 HOH D 9 609 31 HOH HOH . 
S 6 HOH D 10 610 43 HOH HOH . 
S 6 HOH D 11 611 54 HOH HOH . 
S 6 HOH D 12 612 66 HOH HOH . 
S 6 HOH D 13 613 3 HOH HOH . 
S 6 HOH D 14 614 49 HOH HOH . 
S 6 HOH D 15 615 62 HOH HOH . 
S 6 HOH D 16 616 27 HOH HOH . 
S 6 HOH D 17 617 69 HOH HOH . 
S 6 HOH D 18 618 81 HOH HOH . 
S 6 HOH D 19 619 70 HOH HOH . 
S 6 HOH D 20 620 34 HOH HOH . 
S 6 HOH D 21 621 82 HOH HOH . 
S 6 HOH D 22 622 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 -0.17 -21.702 38.668 1 58.08 ? C1 EDO 503 A 1 
HETATM 2 O O1 EDO . . . G 3 -0.137 -20.664 39.655 1 55.14 ? O1 EDO 503 A 1 
HETATM 3 C C2 EDO . . . G 3 -1.059 -21.271 37.508 1 58.98 ? C2 EDO 503 A 1 
HETATM 4 O O2 EDO . . . G 3 -0.785 -22.087 36.364 1 62.73 ? O2 EDO 503 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           430 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#