data_6XFV # _model_server_result.job_id gjGucfhV1rwk236kspnDAA _model_server_result.datetime_utc '2024-11-05 13:36:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xfv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 6XFV # _exptl.entry_id 6XFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-{(3S,4S)-4-[4-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)phenyl]-3-methyl-3-phenylpyrrolidine-1-carbonyl}piperidin-1-yl)ethan-1-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XFV _cell.length_a 97.867 _cell.length_b 97.867 _cell.length_c 130.355 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C28 H30 F6 N2 O3' _chem_comp.formula_weight 556.54 _chem_comp.id V27 _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-{(3S,4S)-4-[4-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)phenyl]-3-methyl-3-phenylpyrrolidine-1-carbonyl}piperidin-1-yl)ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F4 C2 V27 sing 358 n n F3 C2 V27 sing 359 n n C2 F1 V27 sing 360 n n C2 C5 V27 sing 361 n n O10 C5 V27 sing 362 n n C5 C12 V27 sing 363 n n C5 C6 V27 sing 364 n n C59 C58 V27 sing 365 n n C17 C12 V27 doub 366 n y C17 C19 V27 sing 367 n y F9 C6 V27 sing 368 n n C12 C13 V27 sing 369 n y C19 C21 V27 doub 370 n y C6 F8 V27 sing 371 n n C6 F7 V27 sing 372 n n C58 O63 V27 doub 373 n n C58 N57 V27 sing 374 n n O48 C47 V27 doub 375 n n C67 C64 V27 sing 376 n n C67 C49 V27 sing 377 n n C13 C15 V27 doub 378 n y C44 C22 V27 sing 379 n n C44 N43 V27 sing 380 n n C64 N57 V27 sing 381 n n C21 C15 V27 sing 382 n y C21 C22 V27 sing 383 n n N57 C54 V27 sing 384 n n C47 N43 V27 sing 385 n n C47 C49 V27 sing 386 n n C22 C24 V27 sing 387 n n N43 C40 V27 sing 388 n n C49 C51 V27 sing 389 n n C51 C54 V27 sing 390 n n C24 C40 V27 sing 391 n n C24 C29 V27 sing 392 n n C24 C25 V27 sing 393 n n C38 C29 V27 doub 394 n y C38 C36 V27 sing 395 n y C29 C30 V27 sing 396 n y C36 C34 V27 doub 397 n y C30 C32 V27 doub 398 n y C34 C32 V27 sing 399 n y O10 H1 V27 sing 400 n n C13 H2 V27 sing 401 n n C15 H3 V27 sing 402 n n C17 H4 V27 sing 403 n n C19 H5 V27 sing 404 n n C22 H6 V27 sing 405 n n C25 H7 V27 sing 406 n n C25 H8 V27 sing 407 n n C25 H9 V27 sing 408 n n C30 H10 V27 sing 409 n n C32 H11 V27 sing 410 n n C34 H12 V27 sing 411 n n C36 H13 V27 sing 412 n n C38 H14 V27 sing 413 n n C40 H15 V27 sing 414 n n C40 H16 V27 sing 415 n n C44 H17 V27 sing 416 n n C44 H18 V27 sing 417 n n C49 H19 V27 sing 418 n n C51 H20 V27 sing 419 n n C51 H21 V27 sing 420 n n C54 H22 V27 sing 421 n n C54 H23 V27 sing 422 n n C59 H24 V27 sing 423 n n C59 H25 V27 sing 424 n n C59 H26 V27 sing 425 n n C64 H27 V27 sing 426 n n C64 H28 V27 sing 427 n n C67 H29 V27 sing 428 n n C67 H30 V27 sing 429 n n # _atom_sites.entry_id 6XFV _atom_sites.fract_transf_matrix[1][1] 0.010218 _atom_sites.fract_transf_matrix[1][2] 0.005899 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 V27 A 1 500 500 V27 Z7Y . D 2 V27 B 1 500 500 V27 Z7Y . E 3 HOH A 1 601 31 HOH HOH . E 3 HOH A 2 602 12 HOH HOH . E 3 HOH A 3 603 59 HOH HOH . E 3 HOH A 4 604 41 HOH HOH . E 3 HOH A 5 605 34 HOH HOH . E 3 HOH A 6 606 9 HOH HOH . E 3 HOH A 7 607 2 HOH HOH . E 3 HOH A 8 608 49 HOH HOH . E 3 HOH A 9 609 51 HOH HOH . E 3 HOH A 10 610 72 HOH HOH . E 3 HOH A 11 611 6 HOH HOH . E 3 HOH A 12 612 44 HOH HOH . E 3 HOH A 13 613 14 HOH HOH . E 3 HOH A 14 614 1 HOH HOH . E 3 HOH A 15 615 48 HOH HOH . E 3 HOH A 16 616 16 HOH HOH . E 3 HOH A 17 617 68 HOH HOH . E 3 HOH A 18 618 25 HOH HOH . E 3 HOH A 19 619 29 HOH HOH . E 3 HOH A 20 620 23 HOH HOH . E 3 HOH A 21 621 35 HOH HOH . E 3 HOH A 22 622 15 HOH HOH . E 3 HOH A 23 623 40 HOH HOH . E 3 HOH A 24 624 20 HOH HOH . E 3 HOH A 25 625 39 HOH HOH . E 3 HOH A 26 626 60 HOH HOH . E 3 HOH A 27 627 52 HOH HOH . E 3 HOH A 28 628 38 HOH HOH . E 3 HOH A 29 629 3 HOH HOH . E 3 HOH A 30 630 33 HOH HOH . E 3 HOH A 31 631 53 HOH HOH . E 3 HOH A 32 632 13 HOH HOH . E 3 HOH A 33 633 4 HOH HOH . E 3 HOH A 34 634 66 HOH HOH . E 3 HOH A 35 635 30 HOH HOH . E 3 HOH A 36 636 28 HOH HOH . E 3 HOH A 37 637 18 HOH HOH . E 3 HOH A 38 638 63 HOH HOH . F 3 HOH B 1 601 17 HOH HOH . F 3 HOH B 2 602 58 HOH HOH . F 3 HOH B 3 603 7 HOH HOH . F 3 HOH B 4 604 64 HOH HOH . F 3 HOH B 5 605 54 HOH HOH . F 3 HOH B 6 606 42 HOH HOH . F 3 HOH B 7 607 8 HOH HOH . F 3 HOH B 8 608 67 HOH HOH . F 3 HOH B 9 609 46 HOH HOH . F 3 HOH B 10 610 26 HOH HOH . F 3 HOH B 11 611 19 HOH HOH . F 3 HOH B 12 612 11 HOH HOH . F 3 HOH B 13 613 32 HOH HOH . F 3 HOH B 14 614 65 HOH HOH . F 3 HOH B 15 615 62 HOH HOH . F 3 HOH B 16 616 45 HOH HOH . F 3 HOH B 17 617 21 HOH HOH . F 3 HOH B 18 618 24 HOH HOH . F 3 HOH B 19 619 22 HOH HOH . F 3 HOH B 20 620 56 HOH HOH . F 3 HOH B 21 621 37 HOH HOH . F 3 HOH B 22 622 27 HOH HOH . F 3 HOH B 23 623 43 HOH HOH . F 3 HOH B 24 624 10 HOH HOH . F 3 HOH B 25 625 5 HOH HOH . F 3 HOH B 26 626 47 HOH HOH . F 3 HOH B 27 627 55 HOH HOH . F 3 HOH B 28 628 61 HOH HOH . F 3 HOH B 29 629 57 HOH HOH . F 3 HOH B 30 630 69 HOH HOH . F 3 HOH B 31 631 73 HOH HOH . F 3 HOH B 32 632 50 HOH HOH . F 3 HOH B 33 633 36 HOH HOH . F 3 HOH B 34 634 71 HOH HOH . F 3 HOH B 35 635 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 V27 . . . D 2 -30.505 -21.302 30.117 1 96.13 ? O10 V27 500 B 1 HETATM 2 C C2 V27 . . . D 2 -30.583 -19.148 29.089 1 95.79 ? C2 V27 500 B 1 HETATM 3 C C5 V27 . . . D 2 -30.464 -19.912 30.437 1 96.13 ? C5 V27 500 B 1 HETATM 4 C C6 V27 . . . D 2 -31.659 -19.67 31.401 1 96.1 ? C6 V27 500 B 1 HETATM 5 C C12 V27 . . . D 2 -29.105 -19.616 31.114 1 96.24 ? C12 V27 500 B 1 HETATM 6 C C13 V27 . . . D 2 -28.947 -18.51 31.937 1 96.21 ? C13 V27 500 B 1 HETATM 7 C C15 V27 . . . D 2 -27.71 -18.18 32.454 1 96.25 ? C15 V27 500 B 1 HETATM 8 C C17 V27 . . . D 2 -27.986 -20.399 30.857 1 96.29 ? C17 V27 500 B 1 HETATM 9 C C19 V27 . . . D 2 -26.754 -20.07 31.381 1 96.33 ? C19 V27 500 B 1 HETATM 10 C C21 V27 . . . D 2 -26.591 -18.948 32.176 1 96.49 ? C21 V27 500 B 1 HETATM 11 C C22 V27 . . . D 2 -25.216 -18.546 32.667 1 96.69 ? C22 V27 500 B 1 HETATM 12 C C24 V27 . . . D 2 -24.89 -18.745 34.185 1 96.58 ? C24 V27 500 B 1 HETATM 13 C C25 V27 . . . D 2 -25.491 -17.616 35.039 1 96.36 ? C25 V27 500 B 1 HETATM 14 F F1 V27 . . . D 2 -30.56 -17.832 29.263 1 95.7 ? F1 V27 500 B 1 HETATM 15 F F3 V27 . . . D 2 -31.711 -19.442 28.454 1 95.55 ? F3 V27 500 B 1 HETATM 16 F F4 V27 . . . D 2 -29.589 -19.445 28.264 1 95.84 ? F4 V27 500 B 1 HETATM 17 F F7 V27 . . . D 2 -31.488 -20.303 32.556 1 96.01 ? F7 V27 500 B 1 HETATM 18 F F8 V27 . . . D 2 -31.838 -18.385 31.689 1 96.06 ? F8 V27 500 B 1 HETATM 19 F F9 V27 . . . D 2 -32.8 -20.113 30.879 1 96.18 ? F9 V27 500 B 1 HETATM 20 C C29 V27 . . . D 2 -25.434 -20.11 34.673 1 96.52 ? C29 V27 500 B 1 HETATM 21 C C30 V27 . . . D 2 -26.755 -20.248 35.083 1 96.51 ? C30 V27 500 B 1 HETATM 22 C C32 V27 . . . D 2 -27.267 -21.483 35.436 1 96.6 ? C32 V27 500 B 1 HETATM 23 C C34 V27 . . . D 2 -26.467 -22.601 35.396 1 96.59 ? C34 V27 500 B 1 HETATM 24 C C36 V27 . . . D 2 -25.151 -22.482 35.018 1 96.42 ? C36 V27 500 B 1 HETATM 25 C C38 V27 . . . D 2 -24.634 -21.248 34.667 1 96.48 ? C38 V27 500 B 1 HETATM 26 C C40 V27 . . . D 2 -23.351 -18.63 34.2 1 96.87 ? C40 V27 500 B 1 HETATM 27 N N43 V27 . . . D 2 -22.948 -19.143 32.888 1 97.1 ? N43 V27 500 B 1 HETATM 28 C C44 V27 . . . D 2 -24.059 -19.235 31.95 1 96.9 ? C44 V27 500 B 1 HETATM 29 C C47 V27 . . . D 2 -21.753 -19.688 32.601 1 97.45 ? C47 V27 500 B 1 HETATM 30 O O48 V27 . . . D 2 -21.654 -20.602 31.807 1 97.3 ? O48 V27 500 B 1 HETATM 31 C C49 V27 . . . D 2 -20.522 -18.901 32.997 1 97.97 ? C49 V27 500 B 1 HETATM 32 C C51 V27 . . . D 2 -19.353 -19.858 33.277 1 98.24 ? C51 V27 500 B 1 HETATM 33 C C54 V27 . . . D 2 -18.072 -19.049 33.555 1 98.53 ? C54 V27 500 B 1 HETATM 34 N N57 V27 . . . D 2 -17.753 -18.128 32.452 1 98.71 ? N57 V27 500 B 1 HETATM 35 C C58 V27 . . . D 2 -16.549 -18.101 31.804 1 99.01 ? C58 V27 500 B 1 HETATM 36 C C59 V27 . . . D 2 -16.324 -17.06 30.745 1 99.04 ? C59 V27 500 B 1 HETATM 37 O O63 V27 . . . D 2 -15.679 -18.905 32.079 1 99.25 ? O63 V27 500 B 1 HETATM 38 C C64 V27 . . . D 2 -18.865 -17.21 32.172 1 98.48 ? C64 V27 500 B 1 HETATM 39 C C67 V27 . . . D 2 -20.146 -17.965 31.836 1 98.24 ? C67 V27 500 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #