data_6XG5
#
_model_server_result.job_id            UQvZJo_j5uX2N5vD7BaHXw 
_model_server_result.datetime_utc      '2024-11-24 05:06:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xg5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
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_entry.id    6XG5 
#
_exptl.entry_id    6XG5 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XG5 
_cell.length_a            61.809 
_cell.length_b            61.809 
_cell.length_c            104.63 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6XG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6XG5 
_atom_sites.fract_transf_matrix[1][1]    0.016179 
_atom_sites.fract_transf_matrix[1][2]    0.009341 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018682 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009557 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NDP A 1 301 301 NDP NDP . 
C 3 GOL A 1 302 501 GOL GOL . 
D 4 TOP A 1 303 601 TOP TOP . 
E 5 CL A 1 304 2 CL CL . 
F 6 HOH A 1 401 40 HOH HOH . 
F 6 HOH A 2 402 123 HOH HOH . 
F 6 HOH A 3 403 15 HOH HOH . 
F 6 HOH A 4 404 133 HOH HOH . 
F 6 HOH A 5 405 132 HOH HOH . 
F 6 HOH A 6 406 129 HOH HOH . 
F 6 HOH A 7 407 72 HOH HOH . 
F 6 HOH A 8 408 17 HOH HOH . 
F 6 HOH A 9 409 50 HOH HOH . 
F 6 HOH A 10 410 22 HOH HOH . 
F 6 HOH A 11 411 54 HOH HOH . 
F 6 HOH A 12 412 126 HOH HOH . 
F 6 HOH A 13 413 118 HOH HOH . 
F 6 HOH A 14 414 78 HOH HOH . 
F 6 HOH A 15 415 43 HOH HOH . 
F 6 HOH A 16 416 27 HOH HOH . 
F 6 HOH A 17 417 8 HOH HOH . 
F 6 HOH A 18 418 12 HOH HOH . 
F 6 HOH A 19 419 121 HOH HOH . 
F 6 HOH A 20 420 96 HOH HOH . 
F 6 HOH A 21 421 18 HOH HOH . 
F 6 HOH A 22 422 94 HOH HOH . 
F 6 HOH A 23 423 81 HOH HOH . 
F 6 HOH A 24 424 61 HOH HOH . 
F 6 HOH A 25 425 4 HOH HOH . 
F 6 HOH A 26 426 105 HOH HOH . 
F 6 HOH A 27 427 73 HOH HOH . 
F 6 HOH A 28 428 10 HOH HOH . 
F 6 HOH A 29 429 108 HOH HOH . 
F 6 HOH A 30 430 69 HOH HOH . 
F 6 HOH A 31 431 30 HOH HOH . 
F 6 HOH A 32 432 13 HOH HOH . 
F 6 HOH A 33 433 127 HOH HOH . 
F 6 HOH A 34 434 49 HOH HOH . 
F 6 HOH A 35 435 35 HOH HOH . 
F 6 HOH A 36 436 62 HOH HOH . 
F 6 HOH A 37 437 109 HOH HOH . 
F 6 HOH A 38 438 124 HOH HOH . 
F 6 HOH A 39 439 34 HOH HOH . 
F 6 HOH A 40 440 46 HOH HOH . 
F 6 HOH A 41 441 1 HOH HOH . 
F 6 HOH A 42 442 112 HOH HOH . 
F 6 HOH A 43 443 92 HOH HOH . 
F 6 HOH A 44 444 47 HOH HOH . 
F 6 HOH A 45 445 38 HOH HOH . 
F 6 HOH A 46 446 25 HOH HOH . 
F 6 HOH A 47 447 97 HOH HOH . 
F 6 HOH A 48 448 106 HOH HOH . 
F 6 HOH A 49 449 103 HOH HOH . 
F 6 HOH A 50 450 28 HOH HOH . 
F 6 HOH A 51 451 45 HOH HOH . 
F 6 HOH A 52 452 24 HOH HOH . 
F 6 HOH A 53 453 65 HOH HOH . 
F 6 HOH A 54 454 37 HOH HOH . 
F 6 HOH A 55 455 75 HOH HOH . 
F 6 HOH A 56 456 16 HOH HOH . 
F 6 HOH A 57 457 74 HOH HOH . 
F 6 HOH A 58 458 89 HOH HOH . 
F 6 HOH A 59 459 113 HOH HOH . 
F 6 HOH A 60 460 104 HOH HOH . 
F 6 HOH A 61 461 83 HOH HOH . 
F 6 HOH A 62 462 86 HOH HOH . 
F 6 HOH A 63 463 95 HOH HOH . 
F 6 HOH A 64 464 82 HOH HOH . 
F 6 HOH A 65 465 68 HOH HOH . 
F 6 HOH A 66 466 125 HOH HOH . 
F 6 HOH A 67 467 128 HOH HOH . 
F 6 HOH A 68 468 6 HOH HOH . 
F 6 HOH A 69 469 23 HOH HOH . 
F 6 HOH A 70 470 130 HOH HOH . 
F 6 HOH A 71 471 85 HOH HOH . 
F 6 HOH A 72 472 9 HOH HOH . 
F 6 HOH A 73 473 71 HOH HOH . 
F 6 HOH A 74 474 60 HOH HOH . 
F 6 HOH A 75 475 107 HOH HOH . 
F 6 HOH A 76 476 98 HOH HOH . 
F 6 HOH A 77 477 2 HOH HOH . 
F 6 HOH A 78 478 14 HOH HOH . 
F 6 HOH A 79 479 20 HOH HOH . 
F 6 HOH A 80 480 31 HOH HOH . 
F 6 HOH A 81 481 32 HOH HOH . 
F 6 HOH A 82 482 102 HOH HOH . 
F 6 HOH A 83 483 57 HOH HOH . 
F 6 HOH A 84 484 36 HOH HOH . 
F 6 HOH A 85 485 117 HOH HOH . 
F 6 HOH A 86 486 42 HOH HOH . 
F 6 HOH A 87 487 70 HOH HOH . 
F 6 HOH A 88 488 48 HOH HOH . 
F 6 HOH A 89 489 3 HOH HOH . 
F 6 HOH A 90 490 39 HOH HOH . 
F 6 HOH A 91 491 120 HOH HOH . 
F 6 HOH A 92 492 7 HOH HOH . 
F 6 HOH A 93 493 77 HOH HOH . 
F 6 HOH A 94 494 122 HOH HOH . 
F 6 HOH A 95 495 116 HOH HOH . 
F 6 HOH A 96 496 91 HOH HOH . 
F 6 HOH A 97 497 33 HOH HOH . 
F 6 HOH A 98 498 84 HOH HOH . 
F 6 HOH A 99 499 56 HOH HOH . 
F 6 HOH A 100 500 41 HOH HOH . 
F 6 HOH A 101 501 114 HOH HOH . 
F 6 HOH A 102 502 131 HOH HOH . 
F 6 HOH A 103 503 100 HOH HOH . 
F 6 HOH A 104 504 11 HOH HOH . 
F 6 HOH A 105 505 67 HOH HOH . 
F 6 HOH A 106 506 63 HOH HOH . 
F 6 HOH A 107 507 21 HOH HOH . 
F 6 HOH A 108 508 119 HOH HOH . 
F 6 HOH A 109 509 52 HOH HOH . 
F 6 HOH A 110 510 29 HOH HOH . 
F 6 HOH A 111 511 87 HOH HOH . 
F 6 HOH A 112 512 88 HOH HOH . 
F 6 HOH A 113 513 134 HOH HOH . 
F 6 HOH A 114 514 90 HOH HOH . 
F 6 HOH A 115 515 93 HOH HOH . 
F 6 HOH A 116 516 79 HOH HOH . 
F 6 HOH A 117 517 101 HOH HOH . 
F 6 HOH A 118 518 53 HOH HOH . 
F 6 HOH A 119 519 110 HOH HOH . 
F 6 HOH A 120 520 51 HOH HOH . 
F 6 HOH A 121 521 66 HOH HOH . 
F 6 HOH A 122 522 64 HOH HOH . 
F 6 HOH A 123 523 55 HOH HOH . 
F 6 HOH A 124 524 26 HOH HOH . 
F 6 HOH A 125 525 44 HOH HOH . 
F 6 HOH A 126 526 115 HOH HOH . 
F 6 HOH A 127 527 111 HOH HOH . 
F 6 HOH A 128 528 99 HOH HOH . 
F 6 HOH A 129 529 58 HOH HOH . 
F 6 HOH A 130 530 19 HOH HOH . 
F 6 HOH A 131 531 59 HOH HOH . 
F 6 HOH A 132 532 80 HOH HOH . 
F 6 HOH A 133 533 76 HOH HOH . 
F 6 HOH A 134 534 5 HOH HOH . 
F 6 HOH A 135 535 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -13.649 35.634 34.825 1 40.62 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . C 3 -14.744 35.278 33.964 1 39.69 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . C 3 -12.918 34.401 35.319 1 38.84 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . C 3 -12.995 34.342 36.742 1 41.68 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . C 3 -13.471 33.119 34.751 1 36.47 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . C 3 -12.514 32.063 34.751 1 34.63 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#