data_6XG6 # _model_server_result.job_id SxIt0XtUZ-mx-qG-VgTqXQ _model_server_result.datetime_utc '2024-10-19 11:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 6XG6 # _exptl.entry_id 6XG6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XG6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 66 A ASN 119 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A O ASN 118 A ASN 171 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc3 A O THR 121 A THR 174 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.337 ? metalc ? metalc4 A O ARG 124 A ARG 177 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.236 ? metalc ? metalc5 A O GLY 149 A GLY 202 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc6 A OH TYR 153 A TYR 206 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc7 C O3B ADP . A ADP 901 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc8 C O2A ADP . A ADP 901 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc9 B OD1 ASN 66 B ASN 119 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc10 B O ASN 118 B ASN 171 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc11 B O ARG 124 B ARG 177 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.491 ? metalc ? metalc12 B O GLY 149 B GLY 202 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc13 B OH TYR 153 B TYR 206 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.325 ? metalc ? metalc14 G O1B ADP . B ADP 901 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc15 G O1A ADP . B ADP 901 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc16 G O2A ADP . B ADP 901 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6XG6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 901 803 ADP ADP . D 3 BEF A 1 902 804 BEF BEF . E 4 MG A 1 903 805 MG MG . F 5 K A 1 904 901 K K . G 2 ADP B 1 901 803 ADP ADP . H 3 BEF B 1 902 804 BEF BEF . I 4 MG B 1 903 805 MG MG . J 5 K B 1 904 901 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 123.721 126.384 158.949 1 51.16 ? PB ADP 901 A 1 HETATM 2 O O1B ADP . . . C 2 124.458 125.793 157.772 1 51.16 ? O1B ADP 901 A 1 HETATM 3 O O2B ADP . . . C 2 124.101 125.771 160.272 1 51.16 ? O2B ADP 901 A 1 HETATM 4 O O3B ADP . . . C 2 122.235 126.544 158.737 1 51.16 ? O3B ADP 901 A 1 HETATM 5 P PA ADP . . . C 2 123.704 129.017 160.011 1 51.16 ? PA ADP 901 A 1 HETATM 6 O O1A ADP . . . C 2 122.703 129.85 159.248 1 51.16 ? O1A ADP 901 A 1 HETATM 7 O O2A ADP . . . C 2 124.868 129.69 160.698 1 51.16 ? O2A ADP 901 A 1 HETATM 8 O O3A ADP . . . C 2 124.274 127.897 159.001 1 51.16 ? O3A ADP 901 A 1 HETATM 9 O O5' ADP . . . C 2 122.906 128.206 161.149 1 51.16 ? O5' ADP 901 A 1 HETATM 10 C C5' ADP . . . C 2 123.536 127.941 162.402 1 51.16 ? C5' ADP 901 A 1 HETATM 11 C C4' ADP . . . C 2 122.542 127.297 163.358 1 51.16 ? C4' ADP 901 A 1 HETATM 12 O O4' ADP . . . C 2 121.488 128.21 163.669 1 51.16 ? O4' ADP 901 A 1 HETATM 13 C C3' ADP . . . C 2 121.897 126.059 162.758 1 51.16 ? C3' ADP 901 A 1 HETATM 14 O O3' ADP . . . C 2 122.415 124.882 163.383 1 51.16 ? O3' ADP 901 A 1 HETATM 15 C C2' ADP . . . C 2 120.415 126.19 163.042 1 51.16 ? C2' ADP 901 A 1 HETATM 16 O O2' ADP . . . C 2 119.978 125.11 163.872 1 51.16 ? O2' ADP 901 A 1 HETATM 17 C C1' ADP . . . C 2 120.246 127.511 163.775 1 51.16 ? C1' ADP 901 A 1 HETATM 18 N N9 ADP . . . C 2 119.16 128.299 163.143 1 51.16 ? N9 ADP 901 A 1 HETATM 19 C C8 ADP . . . C 2 119.316 129.225 162.179 1 51.16 ? C8 ADP 901 A 1 HETATM 20 N N7 ADP . . . C 2 118.122 129.761 161.819 1 51.16 ? N7 ADP 901 A 1 HETATM 21 C C5 ADP . . . C 2 117.172 129.17 162.566 1 51.16 ? C5 ADP 901 A 1 HETATM 22 C C6 ADP . . . C 2 115.699 129.268 162.695 1 51.16 ? C6 ADP 901 A 1 HETATM 23 N N6 ADP . . . C 2 114.986 130.129 161.931 1 51.16 ? N6 ADP 901 A 1 HETATM 24 N N1 ADP . . . C 2 115.094 128.468 163.601 1 51.16 ? N1 ADP 901 A 1 HETATM 25 C C2 ADP . . . C 2 115.792 127.609 164.367 1 51.16 ? C2 ADP 901 A 1 HETATM 26 N N3 ADP . . . C 2 117.127 127.468 164.302 1 51.16 ? N3 ADP 901 A 1 HETATM 27 C C4 ADP . . . C 2 117.862 128.208 163.438 1 51.16 ? C4 ADP 901 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #