data_6XG6 # _model_server_result.job_id zcqQ5mifiR4xAMVHtAdrIQ _model_server_result.datetime_utc '2024-10-19 11:35:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 6XG6 # _exptl.entry_id 6XG6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 66.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XG6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 66 A ASN 119 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A O ASN 118 A ASN 171 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc3 A O THR 121 A THR 174 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.337 ? metalc ? metalc4 A O ARG 124 A ARG 177 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.236 ? metalc ? metalc5 A O GLY 149 A GLY 202 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc6 A OH TYR 153 A TYR 206 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? metalc ? metalc7 C O3B ADP . A ADP 901 1_555 E MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc8 C O2A ADP . A ADP 901 1_555 F K K . A K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc9 B OD1 ASN 66 B ASN 119 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc10 B O ASN 118 B ASN 171 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.878 ? metalc ? metalc11 B O ARG 124 B ARG 177 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.491 ? metalc ? metalc12 B O GLY 149 B GLY 202 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc13 B OH TYR 153 B TYR 206 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.325 ? metalc ? metalc14 G O1B ADP . B ADP 901 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc15 G O1A ADP . B ADP 901 1_555 I MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc16 G O2A ADP . B ADP 901 1_555 J K K . B K 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.041 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 114 n n BE F2 BEF sing 115 n n BE F3 BEF sing 116 n n # _atom_sites.entry_id 6XG6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 901 803 ADP ADP . D 3 BEF A 1 902 804 BEF BEF . E 4 MG A 1 903 805 MG MG . F 5 K A 1 904 901 K K . G 2 ADP B 1 901 803 ADP ADP . H 3 BEF B 1 902 804 BEF BEF . I 4 MG B 1 903 805 MG MG . J 5 K B 1 904 901 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . D 3 125.446 127.297 156.07 1 40.4 ? BE BEF 902 A 1 HETATM 2 F F1 BEF . . . D 3 123.954 127.629 155.944 1 40.4 ? F1 BEF 902 A 1 HETATM 3 F F2 BEF . . . D 3 126.324 128.086 155.047 1 40.4 ? F2 BEF 902 A 1 HETATM 4 F F3 BEF . . . D 3 125.675 125.79 155.811 1 40.4 ? F3 BEF 902 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #