data_6XGV # _model_server_result.job_id 6zDEtjrjmhVKt3OZVLoHDg _model_server_result.datetime_utc '2024-10-19 15:38:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xgv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 6XGV # _exptl.entry_id 6XGV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XGV _cell.length_a 132.75 _cell.length_b 132.75 _cell.length_c 89.48 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XGV _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLU 43 B GLU 94 1_555 B N CAF 44 B CAF 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 B C CAF 44 B CAF 95 1_555 B N CYS 45 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 A NE2 HIS 96 A HIS 95 1_555 E ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 A NE2 HIS 96 A HIS 95 1_555 E ZN ZN . A ZN 203 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 C O2G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc6 C O1B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc7 D MG MG . A MG 202 1_555 K O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc8 D MG MG . A MG 202 1_555 K O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc9 B ND1 HIS 88 B HIS 139 1_555 I ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc10 B SG CYS 101 B CYS 152 1_555 J ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc11 B SG CYS 104 B CYS 155 1_555 J ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc12 B SG CYS 114 B CYS 165 1_555 I ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 B SG CYS 117 B CYS 168 1_555 I ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc14 B ND1 HIS 122 B HIS 173 1_555 J ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc15 B SG CYS 125 B CYS 176 1_555 J ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc16 B SG CYS 133 B CYS 184 1_555 I ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XGV _atom_sites.fract_transf_matrix[1][1] 0.007533 _atom_sites.fract_transf_matrix[1][2] 0.004349 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GNP A 1 201 1 GNP GNP . D 4 MG A 1 202 5 MG MG . E 5 ZN A 1 203 8 ZN ZN . F 6 GOL B 1 201 2 GOL GOL . G 6 GOL B 1 202 3 GOL GOL . H 7 CL B 1 203 4 CL CL . I 5 ZN B 1 204 6 ZN ZN . J 5 ZN B 1 205 7 ZN ZN . K 8 HOH A 1 301 54 HOH HOH . K 8 HOH A 2 302 87 HOH HOH . K 8 HOH A 3 303 51 HOH HOH . K 8 HOH A 4 304 57 HOH HOH . K 8 HOH A 5 305 34 HOH HOH . K 8 HOH A 6 306 109 HOH HOH . K 8 HOH A 7 307 43 HOH HOH . K 8 HOH A 8 308 19 HOH HOH . K 8 HOH A 9 309 88 HOH HOH . K 8 HOH A 10 310 35 HOH HOH . K 8 HOH A 11 311 78 HOH HOH . K 8 HOH A 12 312 100 HOH HOH . K 8 HOH A 13 313 103 HOH HOH . K 8 HOH A 14 314 106 HOH HOH . K 8 HOH A 15 315 22 HOH HOH . K 8 HOH A 16 316 108 HOH HOH . K 8 HOH A 17 317 70 HOH HOH . K 8 HOH A 18 318 42 HOH HOH . K 8 HOH A 19 319 37 HOH HOH . K 8 HOH A 20 320 21 HOH HOH . K 8 HOH A 21 321 41 HOH HOH . K 8 HOH A 22 322 101 HOH HOH . K 8 HOH A 23 323 18 HOH HOH . K 8 HOH A 24 324 64 HOH HOH . K 8 HOH A 25 325 13 HOH HOH . K 8 HOH A 26 326 107 HOH HOH . K 8 HOH A 27 327 36 HOH HOH . K 8 HOH A 28 328 28 HOH HOH . K 8 HOH A 29 329 102 HOH HOH . K 8 HOH A 30 330 12 HOH HOH . K 8 HOH A 31 331 25 HOH HOH . K 8 HOH A 32 332 74 HOH HOH . K 8 HOH A 33 333 26 HOH HOH . K 8 HOH A 34 334 27 HOH HOH . K 8 HOH A 35 335 104 HOH HOH . K 8 HOH A 36 336 66 HOH HOH . K 8 HOH A 37 337 71 HOH HOH . K 8 HOH A 38 338 77 HOH HOH . K 8 HOH A 39 339 67 HOH HOH . K 8 HOH A 40 340 60 HOH HOH . K 8 HOH A 41 341 105 HOH HOH . K 8 HOH A 42 342 52 HOH HOH . K 8 HOH A 43 343 58 HOH HOH . K 8 HOH A 44 344 72 HOH HOH . K 8 HOH A 45 345 89 HOH HOH . K 8 HOH A 46 346 96 HOH HOH . L 8 HOH B 1 301 46 HOH HOH . L 8 HOH B 2 302 68 HOH HOH . L 8 HOH B 3 303 17 HOH HOH . L 8 HOH B 4 304 24 HOH HOH . L 8 HOH B 5 305 50 HOH HOH . L 8 HOH B 6 306 9 HOH HOH . L 8 HOH B 7 307 7 HOH HOH . L 8 HOH B 8 308 32 HOH HOH . L 8 HOH B 9 309 94 HOH HOH . L 8 HOH B 10 310 98 HOH HOH . L 8 HOH B 11 311 86 HOH HOH . L 8 HOH B 12 312 63 HOH HOH . L 8 HOH B 13 313 20 HOH HOH . L 8 HOH B 14 314 49 HOH HOH . L 8 HOH B 15 315 40 HOH HOH . L 8 HOH B 16 316 38 HOH HOH . L 8 HOH B 17 317 23 HOH HOH . L 8 HOH B 18 318 80 HOH HOH . L 8 HOH B 19 319 73 HOH HOH . L 8 HOH B 20 320 61 HOH HOH . L 8 HOH B 21 321 83 HOH HOH . L 8 HOH B 22 322 16 HOH HOH . L 8 HOH B 23 323 59 HOH HOH . L 8 HOH B 24 324 6 HOH HOH . L 8 HOH B 25 325 81 HOH HOH . L 8 HOH B 26 326 2 HOH HOH . L 8 HOH B 27 327 95 HOH HOH . L 8 HOH B 28 328 113 HOH HOH . L 8 HOH B 29 329 29 HOH HOH . L 8 HOH B 30 330 15 HOH HOH . L 8 HOH B 31 331 30 HOH HOH . L 8 HOH B 32 332 5 HOH HOH . L 8 HOH B 33 333 82 HOH HOH . L 8 HOH B 34 334 56 HOH HOH . L 8 HOH B 35 335 33 HOH HOH . L 8 HOH B 36 336 1 HOH HOH . L 8 HOH B 37 337 90 HOH HOH . L 8 HOH B 38 338 3 HOH HOH . L 8 HOH B 39 339 53 HOH HOH . L 8 HOH B 40 340 4 HOH HOH . L 8 HOH B 41 341 45 HOH HOH . L 8 HOH B 42 342 55 HOH HOH . L 8 HOH B 43 343 62 HOH HOH . L 8 HOH B 44 344 85 HOH HOH . L 8 HOH B 45 345 84 HOH HOH . L 8 HOH B 46 346 44 HOH HOH . L 8 HOH B 47 347 14 HOH HOH . L 8 HOH B 48 348 31 HOH HOH . L 8 HOH B 49 349 47 HOH HOH . L 8 HOH B 50 350 11 HOH HOH . L 8 HOH B 51 351 110 HOH HOH . L 8 HOH B 52 352 8 HOH HOH . L 8 HOH B 53 353 65 HOH HOH . L 8 HOH B 54 354 111 HOH HOH . L 8 HOH B 55 355 10 HOH HOH . L 8 HOH B 56 356 112 HOH HOH . L 8 HOH B 57 357 79 HOH HOH . L 8 HOH B 58 358 75 HOH HOH . L 8 HOH B 59 359 39 HOH HOH . L 8 HOH B 60 360 97 HOH HOH . L 8 HOH B 61 361 99 HOH HOH . L 8 HOH B 62 362 92 HOH HOH . L 8 HOH B 63 363 91 HOH HOH . L 8 HOH B 64 364 48 HOH HOH . L 8 HOH B 65 365 93 HOH HOH . L 8 HOH B 66 366 69 HOH HOH . L 8 HOH B 67 367 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 49.179 _atom_site.Cartn_y 29.344 _atom_site.Cartn_z 0.268 _atom_site.occupancy 0.41 _atom_site.B_iso_or_equiv 68.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #