data_6XHA
#
_model_server_result.job_id            rRBjNiqvzAQs1WmC-QzGRQ 
_model_server_result.datetime_utc      '2024-11-02 14:36:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xha 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    6XHA 
#
_exptl.entry_id    6XHA 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XHA 
_cell.length_a            132.1 
_cell.length_b            132.1 
_cell.length_c            90.17 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XHA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        177 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLU 43 B GLU 94 1_555 B N CAF 44 B CAF 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C CAF 44 B CAF 95 1_555 B N CYS 45 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A OG SER 18 A SER 17 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc3 C O2G GNP . A GNP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc4 C O1B GNP . A GNP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc5 E MG MG . A MG 203 1_555 M O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc6 E MG MG . A MG 203 1_555 M O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc7 B ND1 HIS 88 B HIS 139 1_555 J ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc8 B SG CYS 101 B CYS 152 1_555 K ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc9 B SG CYS 104 B CYS 155 1_555 K ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc10 B SG CYS 114 B CYS 165 1_555 J ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? 
metalc ? metalc11 B SG CYS 117 B CYS 168 1_555 J ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc12 B ND1 HIS 122 B HIS 173 1_555 K ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc13 B SG CYS 125 B CYS 176 1_555 K ZN ZN . B ZN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc14 B SG CYS 133 B CYS 184 1_555 J ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 202 n n 
C1 C2 GOL sing 203 n n 
C1 H11 GOL sing 204 n n 
C1 H12 GOL sing 205 n n 
O1 HO1 GOL sing 206 n n 
C2 O2 GOL sing 207 n n 
C2 C3 GOL sing 208 n n 
C2 H2 GOL sing 209 n n 
O2 HO2 GOL sing 210 n n 
C3 O3 GOL sing 211 n n 
C3 H31 GOL sing 212 n n 
C3 H32 GOL sing 213 n n 
O3 HO3 GOL sing 214 n n 
#
_atom_sites.entry_id                     6XHA 
_atom_sites.fract_transf_matrix[1][1]    0.00757 
_atom_sites.fract_transf_matrix[1][2]    0.004371 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GNP A 1 201 1 GNP GNP . 
D 4 GOL A 1 202 4 GOL GOL . 
E 5 MG A 1 203 6 MG MG . 
F 6 CL A 1 204 9 CL CL . 
G 4 GOL B 1 201 2 GOL GOL . 
H 4 GOL B 1 202 3 GOL GOL . 
I 4 GOL B 1 203 5 GOL GOL . 
J 7 ZN B 1 204 7 ZN ZN . 
K 7 ZN B 1 205 8 ZN ZN . 
L 6 CL B 1 206 10 CL CL . 
M 8 HOH A 1 301 6 HOH HOH . 
M 8 HOH A 2 302 9 HOH HOH . 
M 8 HOH A 3 303 4 HOH HOH . 
M 8 HOH A 4 304 7 HOH HOH . 
M 8 HOH A 5 305 10 HOH HOH . 
N 8 HOH B 1 301 2 HOH HOH . 
N 8 HOH B 2 302 1 HOH HOH . 
N 8 HOH B 3 303 11 HOH HOH . 
N 8 HOH B 4 304 5 HOH HOH . 
N 8 HOH B 5 305 3 HOH HOH . 
N 8 HOH B 6 306 8 HOH HOH . 
N 8 HOH B 7 307 12 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 33.748 42.531 30.106 1 83.64 ? C1 GOL 202 A 1 
HETATM 2 O O1 GOL . . . D 4 33.782 43.539 29.145 1 85.65 ? O1 GOL 202 A 1 
HETATM 3 C C2 GOL . . . D 4 32.364 41.85 29.996 1 94.14 ? C2 GOL 202 A 1 
HETATM 4 O O2 GOL . . . D 4 31.326 42.755 30.159 1 91.01 ? O2 GOL 202 A 1 
HETATM 5 C C3 GOL . . . D 4 32.371 40.76 31.093 1 106.65 ? C3 GOL 202 A 1 
HETATM 6 O O3 GOL . . . D 4 31.063 40.295 31.206 1 93.65 ? O3 GOL 202 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           233 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#