data_6XHB
#
_model_server_result.job_id            y4F9yky_cS47aetIAzbigQ 
_model_server_result.datetime_utc      '2024-11-02 14:27:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xhb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6XHB 
#
_exptl.entry_id    6XHB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XHB 
_cell.length_a            133.984 
_cell.length_b            133.984 
_cell.length_c            89.275 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XHB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        177 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C GLU 43 B GLU 94 1_555 B N CAF 44 B CAF 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C CAF 44 B CAF 95 1_555 B N CYS 45 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc2 A OG1 THR 36 A THR 35 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc3 C O2G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc4 C O1B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc5 D MG MG . A MG 202 1_555 M O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc6 D MG MG . A MG 202 1_555 M O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc7 B ND1 HIS 88 B HIS 139 1_555 I ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc8 B SG CYS 101 B CYS 152 1_555 J ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc9 B SG CYS 104 B CYS 155 1_555 J ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc10 B SG CYS 114 B CYS 165 1_555 I ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc11 B SG CYS 117 B CYS 168 1_555 I ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc12 B ND1 HIS 122 B HIS 173 1_555 J ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc13 B SG CYS 125 B CYS 176 1_555 J ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc14 B SG CYS 133 B CYS 184 1_555 I ZN ZN . B ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 151 n n 
PG O2G GNP sing 152 n n 
PG O3G GNP sing 153 n n 
PG N3B GNP sing 154 n n 
O2G HOG2 GNP sing 155 n n 
O3G HOG3 GNP sing 156 n n 
N3B PB GNP sing 157 n n 
N3B HNB3 GNP sing 158 n n 
PB O1B GNP doub 159 n n 
PB O2B GNP sing 160 n n 
PB O3A GNP sing 161 n n 
O2B HOB2 GNP sing 162 n n 
O3A PA GNP sing 163 n n 
PA O1A GNP doub 164 n n 
PA O2A GNP sing 165 n n 
PA O5' GNP sing 166 n n 
O2A HOA2 GNP sing 167 n n 
O5' C5' GNP sing 168 n n 
C5' C4' GNP sing 169 n n 
C5' "H5'2" GNP sing 170 n n 
C5' "H5'1" GNP sing 171 n n 
C4' O4' GNP sing 172 n n 
C4' C3' GNP sing 173 n n 
C4' H4' GNP sing 174 n n 
O4' C1' GNP sing 175 n n 
C3' O3' GNP sing 176 n n 
C3' C2' GNP sing 177 n n 
C3' H3' GNP sing 178 n n 
O3' HO3' GNP sing 179 n n 
C2' O2' GNP sing 180 n n 
C2' C1' GNP sing 181 n n 
C2' H2' GNP sing 182 n n 
O2' HO2' GNP sing 183 n n 
C1' N9 GNP sing 184 n n 
C1' H1' GNP sing 185 n n 
N9 C8 GNP sing 186 n y 
N9 C4 GNP sing 187 n y 
C8 N7 GNP doub 188 n y 
C8 H8 GNP sing 189 n n 
N7 C5 GNP sing 190 n y 
C5 C6 GNP sing 191 n y 
C5 C4 GNP doub 192 n y 
C6 O6 GNP doub 193 n n 
C6 N1 GNP sing 194 n y 
N1 C2 GNP sing 195 n y 
N1 HN1 GNP sing 196 n n 
C2 N2 GNP sing 197 n n 
C2 N3 GNP doub 198 n y 
N2 HN21 GNP sing 199 n n 
N2 HN22 GNP sing 200 n n 
N3 C4 GNP sing 201 n y 
#
_atom_sites.entry_id                     6XHB 
_atom_sites.fract_transf_matrix[1][1]    0.007464 
_atom_sites.fract_transf_matrix[1][2]    0.004309 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008618 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GNP A 1 201 1 GNP GNP . 
D 4 MG A 1 202 4 MG MG . 
E 5 CL A 1 203 7 CL CL . 
F 5 CL A 1 204 9 CL CL . 
G 6 GOL B 1 201 2 GOL GOL . 
H 7 IPA B 1 202 3 IPA IPA . 
I 8 ZN B 1 203 5 ZN ZN . 
J 8 ZN B 1 204 6 ZN ZN . 
K 5 CL B 1 205 8 CL CL . 
L 6 GOL B 1 206 10 GOL GOL . 
M 9 HOH A 1 301 20 HOH HOH . 
M 9 HOH A 2 302 1 HOH HOH . 
M 9 HOH A 3 303 17 HOH HOH . 
M 9 HOH A 4 304 22 HOH HOH . 
M 9 HOH A 5 305 52 HOH HOH . 
M 9 HOH A 6 306 61 HOH HOH . 
M 9 HOH A 7 307 81 HOH HOH . 
M 9 HOH A 8 308 26 HOH HOH . 
M 9 HOH A 9 309 53 HOH HOH . 
M 9 HOH A 10 310 56 HOH HOH . 
M 9 HOH A 11 311 41 HOH HOH . 
M 9 HOH A 12 312 86 HOH HOH . 
M 9 HOH A 13 313 21 HOH HOH . 
M 9 HOH A 14 314 27 HOH HOH . 
M 9 HOH A 15 315 77 HOH HOH . 
M 9 HOH A 16 316 80 HOH HOH . 
M 9 HOH A 17 317 51 HOH HOH . 
M 9 HOH A 18 318 60 HOH HOH . 
M 9 HOH A 19 319 37 HOH HOH . 
M 9 HOH A 20 320 24 HOH HOH . 
M 9 HOH A 21 321 85 HOH HOH . 
M 9 HOH A 22 322 6 HOH HOH . 
M 9 HOH A 23 323 83 HOH HOH . 
M 9 HOH A 24 324 25 HOH HOH . 
M 9 HOH A 25 325 59 HOH HOH . 
M 9 HOH A 26 326 66 HOH HOH . 
M 9 HOH A 27 327 84 HOH HOH . 
M 9 HOH A 28 328 11 HOH HOH . 
M 9 HOH A 29 329 39 HOH HOH . 
M 9 HOH A 30 330 55 HOH HOH . 
M 9 HOH A 31 331 67 HOH HOH . 
M 9 HOH A 32 332 44 HOH HOH . 
M 9 HOH A 33 333 34 HOH HOH . 
N 9 HOH B 1 301 15 HOH HOH . 
N 9 HOH B 2 302 68 HOH HOH . 
N 9 HOH B 3 303 82 HOH HOH . 
N 9 HOH B 4 304 32 HOH HOH . 
N 9 HOH B 5 305 74 HOH HOH . 
N 9 HOH B 6 306 50 HOH HOH . 
N 9 HOH B 7 307 3 HOH HOH . 
N 9 HOH B 8 308 73 HOH HOH . 
N 9 HOH B 9 309 5 HOH HOH . 
N 9 HOH B 10 310 9 HOH HOH . 
N 9 HOH B 11 311 87 HOH HOH . 
N 9 HOH B 12 312 2 HOH HOH . 
N 9 HOH B 13 313 8 HOH HOH . 
N 9 HOH B 14 314 38 HOH HOH . 
N 9 HOH B 15 315 10 HOH HOH . 
N 9 HOH B 16 316 13 HOH HOH . 
N 9 HOH B 17 317 58 HOH HOH . 
N 9 HOH B 18 318 78 HOH HOH . 
N 9 HOH B 19 319 72 HOH HOH . 
N 9 HOH B 20 320 4 HOH HOH . 
N 9 HOH B 21 321 14 HOH HOH . 
N 9 HOH B 22 322 36 HOH HOH . 
N 9 HOH B 23 323 30 HOH HOH . 
N 9 HOH B 24 324 69 HOH HOH . 
N 9 HOH B 25 325 29 HOH HOH . 
N 9 HOH B 26 326 49 HOH HOH . 
N 9 HOH B 27 327 18 HOH HOH . 
N 9 HOH B 28 328 57 HOH HOH . 
N 9 HOH B 29 329 7 HOH HOH . 
N 9 HOH B 30 330 54 HOH HOH . 
N 9 HOH B 31 331 16 HOH HOH . 
N 9 HOH B 32 332 46 HOH HOH . 
N 9 HOH B 33 333 28 HOH HOH . 
N 9 HOH B 34 334 70 HOH HOH . 
N 9 HOH B 35 335 33 HOH HOH . 
N 9 HOH B 36 336 12 HOH HOH . 
N 9 HOH B 37 337 71 HOH HOH . 
N 9 HOH B 38 338 47 HOH HOH . 
N 9 HOH B 39 339 43 HOH HOH . 
N 9 HOH B 40 340 35 HOH HOH . 
N 9 HOH B 41 341 75 HOH HOH . 
N 9 HOH B 42 342 23 HOH HOH . 
N 9 HOH B 43 343 79 HOH HOH . 
N 9 HOH B 44 344 76 HOH HOH . 
N 9 HOH B 45 345 42 HOH HOH . 
N 9 HOH B 46 346 19 HOH HOH . 
N 9 HOH B 47 347 40 HOH HOH . 
N 9 HOH B 48 348 64 HOH HOH . 
N 9 HOH B 49 349 45 HOH HOH . 
N 9 HOH B 50 350 65 HOH HOH . 
N 9 HOH B 51 351 31 HOH HOH . 
N 9 HOH B 52 352 63 HOH HOH . 
N 9 HOH B 53 353 48 HOH HOH . 
N 9 HOH B 54 354 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 47.287 42.352 10.969 1 48.49 ? PG GNP 201 A 1 
HETATM 2 O O1G GNP . . . C 3 47.298 41.005 10.722 1 48.79 ? O1G GNP 201 A 1 
HETATM 3 O O2G GNP . . . C 3 47.162 42.424 12.346 1 46.01 ? O2G GNP 201 A 1 
HETATM 4 O O3G GNP . . . C 3 48.554 42.849 10.742 1 57.45 ? O3G GNP 201 A 1 
HETATM 5 N N3B GNP . . . C 3 46.164 43.141 10.165 1 54.98 ? N3B GNP 201 A 1 
HETATM 6 P PB GNP . . . C 3 44.596 42.958 10.232 1 52.69 ? PB GNP 201 A 1 
HETATM 7 O O1B GNP . . . C 3 44.188 43.001 11.632 1 48.17 ? O1B GNP 201 A 1 
HETATM 8 O O2B GNP . . . C 3 44.049 41.892 9.406 1 48.86 ? O2B GNP 201 A 1 
HETATM 9 O O3A GNP . . . C 3 44.026 44.261 9.618 1 56.01 ? O3A GNP 201 A 1 
HETATM 10 P PA GNP . . . C 3 43.658 45.685 10.146 1 56.04 ? PA GNP 201 A 1 
HETATM 11 O O1A GNP . . . C 3 44.821 46.232 10.845 1 55.64 ? O1A GNP 201 A 1 
HETATM 12 O O2A GNP . . . C 3 42.413 45.553 10.881 1 51.15 ? O2A GNP 201 A 1 
HETATM 13 O O5' GNP . . . C 3 43.401 46.476 8.83 1 52.73 ? O5' GNP 201 A 1 
HETATM 14 C C5' GNP . . . C 3 44.468 46.78 7.936 1 53.28 ? C5' GNP 201 A 1 
HETATM 15 C C4' GNP . . . C 3 44.042 47.907 7.038 1 55.48 ? C4' GNP 201 A 1 
HETATM 16 O O4' GNP . . . C 3 42.822 47.502 6.389 1 55.3 ? O4' GNP 201 A 1 
HETATM 17 C C3' GNP . . . C 3 43.711 49.22 7.742 1 55.58 ? C3' GNP 201 A 1 
HETATM 18 O O3' GNP . . . C 3 44.16 50.334 7.003 1 57.09 ? O3' GNP 201 A 1 
HETATM 19 C C2' GNP . . . C 3 42.189 49.205 7.761 1 56.89 ? C2' GNP 201 A 1 
HETATM 20 O O2' GNP . . . C 3 41.634 50.487 7.858 1 64.84 ? O2' GNP 201 A 1 
HETATM 21 C C1' GNP . . . C 3 41.886 48.536 6.44 1 56.48 ? C1' GNP 201 A 1 
HETATM 22 N N9 GNP . . . C 3 40.579 47.91 6.433 1 57.2 ? N9 GNP 201 A 1 
HETATM 23 C C8 GNP . . . C 3 40.179 46.912 7.262 1 52.73 ? C8 GNP 201 A 1 
HETATM 24 N N7 GNP . . . C 3 38.963 46.51 7.039 1 53.96 ? N7 GNP 201 A 1 
HETATM 25 C C5 GNP . . . C 3 38.527 47.287 5.992 1 58.1 ? C5 GNP 201 A 1 
HETATM 26 C C6 GNP . . . C 3 37.282 47.282 5.322 1 61.02 ? C6 GNP 201 A 1 
HETATM 27 O O6 GNP . . . C 3 36.303 46.568 5.529 1 57.23 ? O6 GNP 201 A 1 
HETATM 28 N N1 GNP . . . C 3 37.256 48.218 4.302 1 60.09 ? N1 GNP 201 A 1 
HETATM 29 C C2 GNP . . . C 3 38.301 49.04 3.99 1 55.13 ? C2 GNP 201 A 1 
HETATM 30 N N2 GNP . . . C 3 38.106 49.894 2.993 1 57.01 ? N2 GNP 201 A 1 
HETATM 31 N N3 GNP . . . C 3 39.465 49.049 4.613 1 50.58 ? N3 GNP 201 A 1 
HETATM 32 C C4 GNP . . . C 3 39.518 48.147 5.606 1 55.51 ? C4 GNP 201 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#