data_6XHE
#
_model_server_result.job_id            u5o3bLBa21RFpfbT1PX8ww 
_model_server_result.datetime_utc      '2024-10-26 12:30:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xhe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6XHE 
#
_exptl.entry_id    6XHE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              444.336 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-[(S)-[(3S)-3-carboxypyrrolidin-1-yl](hydroxy)phosphoryl]adenosine" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.33 
_cell.angle_gamma         90 
_cell.entry_id            6XHE 
_cell.length_a            101.002 
_cell.length_b            32.795 
_cell.length_c            74.09 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XHE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
#
_chem_comp.formula           'C15 H21 N6 O8 P' 
_chem_comp.formula_weight    444.336 
_chem_comp.id                V2J 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-[(S)-[(3S)-3-carboxypyrrolidin-1-yl](hydroxy)phosphoryl]adenosine" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C6 V2J sing 369 n n 
C6 C5 V2J doub 370 n y 
C6 N1 V2J sing 371 n y 
N7 C5 V2J sing 372 n y 
N7 C8 V2J doub 373 n y 
C5 C4 V2J sing 374 n y 
N1 C2 V2J doub 375 n y 
C8 N9 V2J sing 376 n y 
O2' C2' V2J sing 377 n n 
C4 N9 V2J sing 378 n y 
C4 N3 V2J doub 379 n y 
N9 C1' V2J sing 380 n n 
C2 N3 V2J sing 381 n y 
C2' C1' V2J sing 382 n n 
C2' C3' V2J sing 383 n n 
C1' O4' V2J sing 384 n n 
OX C V2J doub 385 n n 
O C V2J sing 386 n n 
C CB V2J sing 387 n n 
O3' C3' V2J sing 388 n n 
C3' C4' V2J sing 389 n n 
O4' C4' V2J sing 390 n n 
C4' C5' V2J sing 391 n n 
CB CG V2J sing 392 n n 
CB CA V2J sing 393 n n 
CG CD V2J sing 394 n n 
CD N V2J sing 395 n n 
O5' C5' V2J sing 396 n n 
O5' PA V2J sing 397 n n 
CA N V2J sing 398 n n 
N PA V2J sing 399 n n 
PA O2A V2J doub 400 n n 
PA O1A V2J sing 401 n n 
C8 H1 V2J sing 402 n n 
C2 H2 V2J sing 403 n n 
O1A H3 V2J sing 404 n n 
CA H4 V2J sing 405 n n 
CA H5 V2J sing 406 n n 
CD H6 V2J sing 407 n n 
CD H7 V2J sing 408 n n 
CG H8 V2J sing 409 n n 
CG H9 V2J sing 410 n n 
CB H10 V2J sing 411 n n 
O H11 V2J sing 412 n n 
C5' H12 V2J sing 413 n n 
C5' H13 V2J sing 414 n n 
C4' H14 V2J sing 415 n n 
C3' H15 V2J sing 416 n n 
O3' H16 V2J sing 417 n n 
C2' H17 V2J sing 418 n n 
O2' H18 V2J sing 419 n n 
C1' H19 V2J sing 420 n n 
N6 H20 V2J sing 421 n n 
N6 H21 V2J sing 422 n n 
#
_atom_sites.entry_id                     6XHE 
_atom_sites.fract_transf_matrix[1][1]    0.009901 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000057 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 201 201 AMP AMP . 
D 3 V2J B 1 201 201 V2J AJX . 
E 4 HOH A 1 301 32 HOH HOH . 
E 4 HOH A 2 302 8 HOH HOH . 
E 4 HOH A 3 303 83 HOH HOH . 
E 4 HOH A 4 304 27 HOH HOH . 
E 4 HOH A 5 305 30 HOH HOH . 
E 4 HOH A 6 306 44 HOH HOH . 
E 4 HOH A 7 307 52 HOH HOH . 
E 4 HOH A 8 308 4 HOH HOH . 
E 4 HOH A 9 309 41 HOH HOH . 
E 4 HOH A 10 310 3 HOH HOH . 
E 4 HOH A 11 311 2 HOH HOH . 
E 4 HOH A 12 312 45 HOH HOH . 
E 4 HOH A 13 313 68 HOH HOH . 
E 4 HOH A 14 314 49 HOH HOH . 
E 4 HOH A 15 315 79 HOH HOH . 
E 4 HOH A 16 316 53 HOH HOH . 
E 4 HOH A 17 317 99 HOH HOH . 
E 4 HOH A 18 318 34 HOH HOH . 
E 4 HOH A 19 319 46 HOH HOH . 
E 4 HOH A 20 320 50 HOH HOH . 
E 4 HOH A 21 321 81 HOH HOH . 
E 4 HOH A 22 322 40 HOH HOH . 
E 4 HOH A 23 323 5 HOH HOH . 
E 4 HOH A 24 324 29 HOH HOH . 
E 4 HOH A 25 325 33 HOH HOH . 
E 4 HOH A 26 326 84 HOH HOH . 
E 4 HOH A 27 327 51 HOH HOH . 
E 4 HOH A 28 328 21 HOH HOH . 
E 4 HOH A 29 329 16 HOH HOH . 
E 4 HOH A 30 330 9 HOH HOH . 
E 4 HOH A 31 331 62 HOH HOH . 
E 4 HOH A 32 332 48 HOH HOH . 
E 4 HOH A 33 333 28 HOH HOH . 
E 4 HOH A 34 334 69 HOH HOH . 
E 4 HOH A 35 335 54 HOH HOH . 
E 4 HOH A 36 336 42 HOH HOH . 
E 4 HOH A 37 337 22 HOH HOH . 
E 4 HOH A 38 338 82 HOH HOH . 
E 4 HOH A 39 339 25 HOH HOH . 
E 4 HOH A 40 340 101 HOH HOH . 
E 4 HOH A 41 341 6 HOH HOH . 
E 4 HOH A 42 342 96 HOH HOH . 
E 4 HOH A 43 343 94 HOH HOH . 
E 4 HOH A 44 344 43 HOH HOH . 
E 4 HOH A 45 345 95 HOH HOH . 
E 4 HOH A 46 346 26 HOH HOH . 
E 4 HOH A 47 347 80 HOH HOH . 
E 4 HOH A 48 348 1 HOH HOH . 
E 4 HOH A 49 349 97 HOH HOH . 
E 4 HOH A 50 350 78 HOH HOH . 
E 4 HOH A 51 351 23 HOH HOH . 
E 4 HOH A 52 352 37 HOH HOH . 
E 4 HOH A 53 353 38 HOH HOH . 
E 4 HOH A 54 354 93 HOH HOH . 
E 4 HOH A 55 355 65 HOH HOH . 
E 4 HOH A 56 356 47 HOH HOH . 
E 4 HOH A 57 357 15 HOH HOH . 
E 4 HOH A 58 358 72 HOH HOH . 
E 4 HOH A 59 359 20 HOH HOH . 
E 4 HOH A 60 360 70 HOH HOH . 
F 4 HOH B 1 301 89 HOH HOH . 
F 4 HOH B 2 302 102 HOH HOH . 
F 4 HOH B 3 303 19 HOH HOH . 
F 4 HOH B 4 304 60 HOH HOH . 
F 4 HOH B 5 305 64 HOH HOH . 
F 4 HOH B 6 306 58 HOH HOH . 
F 4 HOH B 7 307 98 HOH HOH . 
F 4 HOH B 8 308 76 HOH HOH . 
F 4 HOH B 9 309 12 HOH HOH . 
F 4 HOH B 10 310 57 HOH HOH . 
F 4 HOH B 11 311 61 HOH HOH . 
F 4 HOH B 12 312 17 HOH HOH . 
F 4 HOH B 13 313 91 HOH HOH . 
F 4 HOH B 14 314 18 HOH HOH . 
F 4 HOH B 15 315 56 HOH HOH . 
F 4 HOH B 16 316 13 HOH HOH . 
F 4 HOH B 17 317 14 HOH HOH . 
F 4 HOH B 18 318 7 HOH HOH . 
F 4 HOH B 19 319 31 HOH HOH . 
F 4 HOH B 20 320 90 HOH HOH . 
F 4 HOH B 21 321 55 HOH HOH . 
F 4 HOH B 22 322 87 HOH HOH . 
F 4 HOH B 23 323 66 HOH HOH . 
F 4 HOH B 24 324 86 HOH HOH . 
F 4 HOH B 25 325 36 HOH HOH . 
F 4 HOH B 26 326 92 HOH HOH . 
F 4 HOH B 27 327 75 HOH HOH . 
F 4 HOH B 28 328 77 HOH HOH . 
F 4 HOH B 29 329 59 HOH HOH . 
F 4 HOH B 30 330 67 HOH HOH . 
F 4 HOH B 31 331 100 HOH HOH . 
F 4 HOH B 32 332 35 HOH HOH . 
F 4 HOH B 33 333 74 HOH HOH . 
F 4 HOH B 34 334 88 HOH HOH . 
F 4 HOH B 35 335 85 HOH HOH . 
F 4 HOH B 36 336 73 HOH HOH . 
F 4 HOH B 37 337 63 HOH HOH . 
F 4 HOH B 38 338 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 V2J . . . D 3 37.543 -20.45 -21.326 1 46.13 ? C4 V2J 201 B 1 
HETATM 2 C C5 V2J . . . D 3 36.813 -20.001 -22.526 1 44.99 ? C5 V2J 201 B 1 
HETATM 3 C C6 V2J . . . D 3 37.002 -18.635 -23.004 1 42.5 ? C6 V2J 201 B 1 
HETATM 4 C C8 V2J . . . D 3 36.292 -22.044 -22.134 1 48.56 ? C8 V2J 201 B 1 
HETATM 5 N N1 V2J . . . D 3 37.831 -17.796 -22.335 1 44.48 ? N1 V2J 201 B 1 
HETATM 6 C C2 V2J . . . D 3 38.611 -18.191 -21.141 1 47.07 ? C2 V2J 201 B 1 
HETATM 7 O O2A V2J . . . D 3 38.064 -19.297 -15.378 1 66.07 ? O2A V2J 201 B 1 
HETATM 8 P PA V2J . . . D 3 39.202 -20.277 -15.566 1 79.53 ? PA V2J 201 B 1 
HETATM 9 O O1A V2J . . . D 3 39.599 -21.116 -14.356 1 74.65 ? O1A V2J 201 B 1 
HETATM 10 N N V2J . . . D 3 40.587 -19.503 -15.991 1 86.59 ? N V2J 201 B 1 
HETATM 11 C CA V2J . . . D 3 41.624 -20.358 -16.636 1 89.12 ? CA V2J 201 B 1 
HETATM 12 C CD V2J . . . D 3 40.437 -18.292 -16.839 1 87.42 ? CD V2J 201 B 1 
HETATM 13 C CG V2J . . . D 3 41.656 -18.215 -17.754 1 85.53 ? CG V2J 201 B 1 
HETATM 14 C CB V2J . . . D 3 42.098 -19.662 -17.911 1 88.23 ? CB V2J 201 B 1 
HETATM 15 C C V2J . . . D 3 41.431 -20.315 -19.086 1 88.53 ? C V2J 201 B 1 
HETATM 16 O OX V2J . . . D 3 41.898 -21.375 -19.575 1 87.84 ? OX V2J 201 B 1 
HETATM 17 O O V2J . . . D 3 40.391 -19.778 -19.505 1 80.31 ? O V2J 201 B 1 
HETATM 18 O O5' V2J . . . D 3 38.64 -21.271 -16.727 1 73.42 ? O5' V2J 201 B 1 
HETATM 19 C C5' V2J . . . D 3 38.631 -22.7 -16.636 1 74.47 ? C5' V2J 201 B 1 
HETATM 20 C C4' V2J . . . D 3 38.218 -23.33 -17.975 1 73.13 ? C4' V2J 201 B 1 
HETATM 21 C C3' V2J . . . D 3 39.409 -23.65 -18.895 1 71.54 ? C3' V2J 201 B 1 
HETATM 22 O O3' V2J . . . D 3 39.599 -25.067 -19.002 1 72.55 ? O3' V2J 201 B 1 
HETATM 23 C C2' V2J . . . D 3 39.078 -23 -20.237 1 68.5 ? C2' V2J 201 B 1 
HETATM 24 O O2' V2J . . . D 3 39.394 -23.777 -21.408 1 73.45 ? O2' V2J 201 B 1 
HETATM 25 C C1' V2J . . . D 3 37.565 -22.732 -20.119 1 66.2 ? C1' V2J 201 B 1 
HETATM 26 O O4' V2J . . . D 3 37.336 -22.462 -18.723 1 69.43 ? O4' V2J 201 B 1 
HETATM 27 N N9 V2J . . . D 3 37.139 -21.712 -21.147 1 51.3 ? N9 V2J 201 B 1 
HETATM 28 N N3 V2J . . . D 3 38.372 -19.583 -20.679 1 46.93 ? N3 V2J 201 B 1 
HETATM 29 N N6 V2J . . . D 3 36.32 -18.263 -24.113 1 38.53 ? N6 V2J 201 B 1 
HETATM 30 N N7 V2J . . . D 3 36.066 -21.026 -22.976 1 42.41 ? N7 V2J 201 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           30 
#