data_6XHK # _model_server_result.job_id YIrrs973qi3SmeeZKzkijw _model_server_result.datetime_utc '2025-07-23 17:00:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xhk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6XHK # _exptl.entry_id 6XHK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6XHK _cell.length_a 99.237 _cell.length_b 99.237 _cell.length_c 268.757 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XHK _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 37 A ILE 37 1_555 A N CME 38 A CME 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CME 38 A CME 38 1_555 A N ALA 39 A ALA 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 256 n n PA O2A NDP sing 257 n n PA O5B NDP sing 258 n n PA O3 NDP sing 259 n n O2A HOA2 NDP sing 260 n n O5B C5B NDP sing 261 n n C5B C4B NDP sing 262 n n C5B H51A NDP sing 263 n n C5B H52A NDP sing 264 n n C4B O4B NDP sing 265 n n C4B C3B NDP sing 266 n n C4B H4B NDP sing 267 n n O4B C1B NDP sing 268 n n C3B O3B NDP sing 269 n n C3B C2B NDP sing 270 n n C3B H3B NDP sing 271 n n O3B HO3A NDP sing 272 n n C2B O2B NDP sing 273 n n C2B C1B NDP sing 274 n n C2B H2B NDP sing 275 n n O2B P2B NDP sing 276 n n C1B N9A NDP sing 277 n n C1B H1B NDP sing 278 n n N9A C8A NDP sing 279 n y N9A C4A NDP sing 280 n y C8A N7A NDP doub 281 n y C8A H8A NDP sing 282 n n N7A C5A NDP sing 283 n y C5A C6A NDP sing 284 n y C5A C4A NDP doub 285 n y C6A N6A NDP sing 286 n n C6A N1A NDP doub 287 n y N6A H61A NDP sing 288 n n N6A H62A NDP sing 289 n n N1A C2A NDP sing 290 n y C2A N3A NDP doub 291 n y C2A H2A NDP sing 292 n n N3A C4A NDP sing 293 n y O3 PN NDP sing 294 n n PN O1N NDP doub 295 n n PN O2N NDP sing 296 n n PN O5D NDP sing 297 n n O2N H21N NDP sing 298 n n O5D C5D NDP sing 299 n n C5D C4D NDP sing 300 n n C5D H51N NDP sing 301 n n C5D H52N NDP sing 302 n n C4D O4D NDP sing 303 n n C4D C3D NDP sing 304 n n C4D H4D NDP sing 305 n n O4D C1D NDP sing 306 n n C3D O3D NDP sing 307 n n C3D C2D NDP sing 308 n n C3D H3D NDP sing 309 n n O3D HO3N NDP sing 310 n n C2D O2D NDP sing 311 n n C2D C1D NDP sing 312 n n C2D H2D NDP sing 313 n n O2D HO2N NDP sing 314 n n C1D N1N NDP sing 315 n n C1D H1D NDP sing 316 n n N1N C2N NDP sing 317 n n N1N C6N NDP sing 318 n n C2N C3N NDP doub 319 n n C2N H2N NDP sing 320 n n C3N C7N NDP sing 321 n n C3N C4N NDP sing 322 n n C7N O7N NDP doub 323 n n C7N N7N NDP sing 324 n n N7N H71N NDP sing 325 n n N7N H72N NDP sing 326 n n C4N C5N NDP sing 327 n n C4N H41N NDP sing 328 n n C4N H42N NDP sing 329 n n C5N C6N NDP doub 330 n n C5N H5N NDP sing 331 n n C6N H6N NDP sing 332 n n P2B O1X NDP doub 333 n n P2B O2X NDP sing 334 n n P2B O3X NDP sing 335 n n O2X HOP2 NDP sing 336 n n O3X HOP3 NDP sing 337 n n # _atom_sites.entry_id 6XHK _atom_sites.fract_transf_matrix[1][1] 0.010077 _atom_sites.fract_transf_matrix[1][2] 0.005818 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003721 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NDP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id NDP _pdbx_nonpoly_scheme.auth_mon_id NDP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 34.549 26.923 24.477 1 140.77 ? PA NDP 401 A 1 HETATM 2 O O1A NDP . . . B 2 35.811 27.304 23.757 1 158.92 ? O1A NDP 401 A 1 HETATM 3 O O2A NDP . . . B 2 33.345 27.129 23.564 1 137.07 ? O2A NDP 401 A 1 HETATM 4 O O5B NDP . . . B 2 34.443 27.813 25.876 1 136.42 ? O5B NDP 401 A 1 HETATM 5 C C5B NDP . . . B 2 33.144 28.023 26.523 1 117.39 ? C5B NDP 401 A 1 HETATM 6 C C4B NDP . . . B 2 32.939 29.532 26.925 1 96.54 ? C4B NDP 401 A 1 HETATM 7 O O4B NDP . . . B 2 33.146 29.747 28.197 1 89.37 ? O4B NDP 401 A 1 HETATM 8 C C3B NDP . . . B 2 33.955 30.448 26.184 1 89.51 ? C3B NDP 401 A 1 HETATM 9 O O3B NDP . . . B 2 33.314 31.35 25.393 1 89.35 ? O3B NDP 401 A 1 HETATM 10 C C2B NDP . . . B 2 34.695 31.249 27.247 1 82.78 ? C2B NDP 401 A 1 HETATM 11 O O2B NDP . . . B 2 34.778 32.628 26.691 1 77.84 ? O2B NDP 401 A 1 HETATM 12 C C1B NDP . . . B 2 33.888 31.187 28.277 1 88.49 ? C1B NDP 401 A 1 HETATM 13 N N9A NDP . . . B 2 34.515 31.446 29.577 1 92.88 ? N9A NDP 401 A 1 HETATM 14 C C8A NDP . . . B 2 35.834 31.609 29.886 1 103.79 ? C8A NDP 401 A 1 HETATM 15 N N7A NDP . . . B 2 35.944 31.843 31.225 1 92.22 ? N7A NDP 401 A 1 HETATM 16 C C5A NDP . . . B 2 34.719 31.826 31.726 1 93.77 ? C5A NDP 401 A 1 HETATM 17 C C6A NDP . . . B 2 34.216 32.033 33.16 1 81.84 ? C6A NDP 401 A 1 HETATM 18 N N6A NDP . . . B 2 35.178 32.281 34.211 1 84.99 ? N6A NDP 401 A 1 HETATM 19 N N1A NDP . . . B 2 32.816 31.97 33.416 1 66.98 ? N1A NDP 401 A 1 HETATM 20 C C2A NDP . . . B 2 31.871 31.722 32.349 1 64.85 ? C2A NDP 401 A 1 HETATM 21 N N3A NDP . . . B 2 32.369 31.522 30.973 1 79.88 ? N3A NDP 401 A 1 HETATM 22 C C4A NDP . . . B 2 33.834 31.586 30.709 1 88.69 ? C4A NDP 401 A 1 HETATM 23 O O3 NDP . . . B 2 34.563 25.284 24.888 1 134.05 ? O3 NDP 401 A 1 HETATM 24 P PN NDP . . . B 2 33.191 24.313 25.123 1 135.47 ? PN NDP 401 A 1 HETATM 25 O O1N NDP . . . B 2 31.95 25.174 25.373 1 144.51 ? O1N NDP 401 A 1 HETATM 26 O O2N NDP . . . B 2 32.928 23.517 23.887 1 151.93 ? O2N NDP 401 A 1 HETATM 27 O O5D NDP . . . B 2 33.527 23.283 26.389 1 131.84 ? O5D NDP 401 A 1 HETATM 28 C C5D NDP . . . B 2 34.564 23.63 27.333 1 127.78 ? C5D NDP 401 A 1 HETATM 29 C C4D NDP . . . B 2 35.055 22.554 28.168 1 124.75 ? C4D NDP 401 A 1 HETATM 30 O O4D NDP . . . B 2 34.136 21.262 28.134 1 115.63 ? O4D NDP 401 A 1 HETATM 31 C C3D NDP . . . B 2 36.454 22.05 27.741 1 137.61 ? C3D NDP 401 A 1 HETATM 32 O O3D NDP . . . B 2 37.345 21.891 28.929 1 143.04 ? O3D NDP 401 A 1 HETATM 33 C C2D NDP . . . B 2 36.225 20.868 27.118 1 142.46 ? C2D NDP 401 A 1 HETATM 34 O O2D NDP . . . B 2 37.366 19.953 27.125 1 152.9 ? O2D NDP 401 A 1 HETATM 35 C C1D NDP . . . B 2 34.941 20.241 27.905 1 126.08 ? C1D NDP 401 A 1 HETATM 36 N N1N NDP . . . B 2 34.296 19.088 27.241 1 119.5 ? N1N NDP 401 A 1 HETATM 37 C C2N NDP . . . B 2 33.833 18.003 28.11 1 134.05 ? C2N NDP 401 A 1 HETATM 38 C C3N NDP . . . B 2 33.326 16.653 27.573 1 141.63 ? C3N NDP 401 A 1 HETATM 39 C C7N NDP . . . B 2 32.874 15.552 28.617 1 144.56 ? C7N NDP 401 A 1 HETATM 40 O O7N NDP . . . B 2 32.857 14.386 28.302 1 156.21 ? O7N NDP 401 A 1 HETATM 41 N N7N NDP . . . B 2 32.475 15.97 29.963 1 131.37 ? N7N NDP 401 A 1 HETATM 42 C C4N NDP . . . B 2 33.018 16.521 26.061 1 139.28 ? C4N NDP 401 A 1 HETATM 43 C C5N NDP . . . B 2 33.721 17.595 25.201 1 131.03 ? C5N NDP 401 A 1 HETATM 44 C C6N NDP . . . B 2 34.108 18.968 25.792 1 116.03 ? C6N NDP 401 A 1 HETATM 45 P P2B NDP . . . B 2 36.278 33.172 26.373 1 106.76 ? P2B NDP 401 A 1 HETATM 46 O O1X NDP . . . B 2 37.216 32.901 27.53 1 99.07 ? O1X NDP 401 A 1 HETATM 47 O O2X NDP . . . B 2 36.793 32.425 25.155 1 115.68 ? O2X NDP 401 A 1 HETATM 48 O O3X NDP . . . B 2 36.19 34.67 26.131 1 120.52 ? O3X NDP 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 425 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #