data_6XHS # _model_server_result.job_id asRKKdq6EXx_U3H9E0Mu4A _model_server_result.datetime_utc '2025-07-07 17:30:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xhs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6XHS # _exptl.entry_id 6XHS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.46 _cell.angle_gamma 90 _cell.entry_id 6XHS _cell.length_a 49.357 _cell.length_b 138.521 _cell.length_c 109.564 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XHS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,L,M 1 1 C,D,H,N,O 2 1 E,F,I,J,K,P 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O2A CTP . E CTP 301 1_555 J MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc2 I O2B CTP . E CTP 301 1_555 J MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 I O1G CTP . E CTP 301 1_555 J MG MG . E MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc4 J MG MG . E MG 302 1_555 P O HOH . E HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc5 J MG MG . E MG 302 1_555 P O HOH . E HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 J MG MG . E MG 302 1_555 P O HOH . E HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 6XHS _atom_sites.fract_transf_matrix[1][1] 0.020261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002294 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CTP B 1 301 1 CTP CTP . H 3 SCN C 1 301 1 SCN SCN . I 2 CTP E 1 301 2 CTP CTP . J 4 MG E 1 302 1 MG MG . K 3 SCN F 1 301 3 SCN SCN . L 5 HOH A 1 301 13 HOH HOH . L 5 HOH A 2 302 14 HOH HOH . M 5 HOH B 1 401 2 HOH HOH . M 5 HOH B 2 402 12 HOH HOH . N 5 HOH C 1 401 11 HOH HOH . O 5 HOH D 1 301 6 HOH HOH . O 5 HOH D 2 302 9 HOH HOH . P 5 HOH E 1 401 5 HOH HOH . P 5 HOH E 2 402 4 HOH HOH . P 5 HOH E 3 403 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . I 2 13.191 -4.45 109.609 1 65.69 ? N1 CTP 301 E 1 HETATM 2 C C2 CTP . . . I 2 13.37 -2.974 109.666 1 64.78 ? C2 CTP 301 E 1 HETATM 3 N N3 CTP . . . I 2 12.853 -2.208 110.832 1 64.26 ? N3 CTP 301 E 1 HETATM 4 C C4 CTP . . . I 2 12.17 -2.882 111.921 1 64.19 ? C4 CTP 301 E 1 HETATM 5 C C5 CTP . . . I 2 11.987 -4.347 111.87 1 64.68 ? C5 CTP 301 E 1 HETATM 6 C C6 CTP . . . I 2 12.51 -5.108 110.707 1 65.29 ? C6 CTP 301 E 1 HETATM 7 O O2 CTP . . . I 2 13.929 -2.416 108.784 1 64.56 ? O2 CTP 301 E 1 HETATM 8 N N4 CTP . . . I 2 11.654 -2.162 113.071 1 63.95 ? N4 CTP 301 E 1 HETATM 9 C C1' CTP . . . I 2 13.699 -5.231 108.499 1 66.81 ? C1' CTP 301 E 1 HETATM 10 C C2' CTP . . . I 2 14.358 -6.261 108.95 1 67.21 ? C2' CTP 301 E 1 HETATM 11 O O2' CTP . . . I 2 15.851 -6.029 108.875 1 67.35 ? O2' CTP 301 E 1 HETATM 12 C C3' CTP . . . I 2 13.976 -7.42 108.06 1 67.26 ? C3' CTP 301 E 1 HETATM 13 C C4' CTP . . . I 2 12.512 -7.083 107.644 1 67.59 ? C4' CTP 301 E 1 HETATM 14 O O4' CTP . . . I 2 12.477 -5.812 107.599 1 67.35 ? O4' CTP 301 E 1 HETATM 15 O O3' CTP . . . I 2 14.796 -7.431 106.974 1 67.01 ? O3' CTP 301 E 1 HETATM 16 C C5' CTP . . . I 2 11.491 -7.533 108.718 1 68.3 ? C5' CTP 301 E 1 HETATM 17 O O5' CTP . . . I 2 11.273 -8.89 108.575 1 69.49 ? O5' CTP 301 E 1 HETATM 18 P PA CTP . . . I 2 11.363 -9.756 109.963 1 71.04 ? PA CTP 301 E 1 HETATM 19 O O1A CTP . . . I 2 11.188 -11.238 109.705 1 70.35 ? O1A CTP 301 E 1 HETATM 20 O O2A CTP . . . I 2 10.295 -9.228 110.899 1 71.31 ? O2A CTP 301 E 1 HETATM 21 O O3A CTP . . . I 2 12.835 -9.478 110.641 1 72.86 ? O3A CTP 301 E 1 HETATM 22 P PB CTP . . . I 2 13.152 -8.527 111.962 1 74.34 ? PB CTP 301 E 1 HETATM 23 O O1B CTP . . . I 2 14.45 -7.808 111.677 1 74.88 ? O1B CTP 301 E 1 HETATM 24 O O2B CTP . . . I 2 11.964 -7.662 112.34 1 74.38 ? O2B CTP 301 E 1 HETATM 25 O O3B CTP . . . I 2 13.444 -9.491 113.239 1 75.06 ? O3B CTP 301 E 1 HETATM 26 P PG CTP . . . I 2 12.165 -10.073 114.071 1 75.45 ? PG CTP 301 E 1 HETATM 27 O O1G CTP . . . I 2 10.891 -9.469 113.502 1 75.03 ? O1G CTP 301 E 1 HETATM 28 O O2G CTP . . . I 2 12.177 -11.595 114.012 1 75.57 ? O2G CTP 301 E 1 HETATM 29 O O3G CTP . . . I 2 12.385 -9.58 115.481 1 75.86 ? O3G CTP 301 E 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #