data_6XIW # _model_server_result.job_id mMeB77EpsiUrWcipEyVaxA _model_server_result.datetime_utc '2024-10-19 16:37:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1805}' # _entry.id 6XIW # _exptl.entry_id 6XIW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 720.012 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XIW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 226 B CYS 226 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 304 B CYS 304 1_555 B SG CYS 341 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 324 B CYS 324 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 330 B CYS 330 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C MET 286 A MET 286 1_555 A N TYS 287 A TYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TYS 287 A TYS 287 1_555 A N ARG 288 A ARG 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 D C1 NAG . A NAG 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C39 H78 N O8 P' _chem_comp.formula_weight 720.012 _chem_comp.id PEV _chem_comp.mon_nstd_flag . _chem_comp.name '(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLETHANOLAMINE;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # _atom_sites.entry_id 6XIW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1801 1604 NAG NAG . D 3 NAG A 1 1802 1605 NAG NAG . E 4 PEV A 1 1803 1 PEV PEV . F 4 PEV A 1 1804 2 PEV PEV . G 4 PEV A 1 1805 3 PEV PEV . H 4 PEV A 1 1806 4 PEV PEV . I 4 PEV A 1 1807 5 PEV PEV . J 5 PGV A 1 1808 6 PGV PGV . K 5 PGV A 1 1809 7 PGV PGV . L 6 Y01 A 1 1810 8 Y01 Y01 . M 6 Y01 A 1 1811 9 Y01 Y01 . N 6 Y01 A 1 1812 10 Y01 Y01 . O 7 HOH A 1 1901 5 HOH HOH . O 7 HOH A 2 1902 4 HOH HOH . O 7 HOH A 3 1903 3 HOH HOH . O 7 HOH A 4 1904 1 HOH HOH . P 7 HOH B 1 501 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C36 PEV . . . G 4 129.646 147.666 164.92 1 51.6 ? C36 PEV 1805 A 1 HETATM 2 C C35 PEV . . . G 4 130.334 148.064 166.223 1 51.6 ? C35 PEV 1805 A 1 HETATM 3 C C34 PEV . . . G 4 130.422 149.585 166.315 1 51.6 ? C34 PEV 1805 A 1 HETATM 4 C C33 PEV . . . G 4 131.465 149.967 167.362 1 51.6 ? C33 PEV 1805 A 1 HETATM 5 C C32 PEV . . . G 4 131.292 151.436 167.733 1 51.6 ? C32 PEV 1805 A 1 HETATM 6 C C31 PEV . . . G 4 132.143 151.757 168.959 1 51.6 ? C31 PEV 1805 A 1 HETATM 7 O O31 PEV . . . G 4 133.276 151.414 169.002 1 51.6 ? O31 PEV 1805 A 1 HETATM 8 O O2 PEV . . . G 4 131.581 152.455 170.033 1 51.6 ? O2 PEV 1805 A 1 HETATM 9 C C2 PEV . . . G 4 131.349 153.809 169.769 1 51.6 ? C2 PEV 1805 A 1 HETATM 10 C C1 PEV . . . G 4 132.386 154.649 170.511 1 51.6 ? C1 PEV 1805 A 1 HETATM 11 O O3P PEV . . . G 4 133.547 154.729 169.734 1 51.6 ? O3P PEV 1805 A 1 HETATM 12 P P PEV . . . G 4 134.749 155.754 170.203 1 51.6 ? P PEV 1805 A 1 HETATM 13 O O1P PEV . . . G 4 135.215 156.556 169.013 1 51.6 ? O1P PEV 1805 A 1 HETATM 14 O O2P PEV . . . G 4 134.231 156.687 171.271 1 51.6 ? O2P PEV 1805 A 1 HETATM 15 O O4P PEV . . . G 4 136.018 154.886 170.795 1 51.6 ? O4P PEV 1805 A 1 HETATM 16 C C4 PEV . . . G 4 137.264 155.515 170.88 1 51.6 ? C4 PEV 1805 A 1 HETATM 17 C C5 PEV . . . G 4 138.366 154.465 170.989 1 51.6 ? C5 PEV 1805 A 1 HETATM 18 N N6 PEV . . . G 4 139.524 155.049 171.642 1 51.6 ? N6 PEV 1805 A 1 HETATM 19 C C3 PEV . . . G 4 129.946 154.189 170.236 1 51.6 ? C3 PEV 1805 A 1 HETATM 20 O O3 PEV . . . G 4 129.064 154.153 169.15 1 51.6 ? O3 PEV 1805 A 1 HETATM 21 C C11 PEV . . . G 4 128.947 155.373 168.474 1 51.6 ? C11 PEV 1805 A 1 HETATM 22 O O11 PEV . . . G 4 129.343 156.368 168.981 1 51.6 ? O11 PEV 1805 A 1 HETATM 23 C C12 PEV . . . G 4 128.313 155.421 167.085 1 51.6 ? C12 PEV 1805 A 1 HETATM 24 C C13 PEV . . . G 4 126.821 155.721 167.208 1 51.6 ? C13 PEV 1805 A 1 HETATM 25 C C14 PEV . . . G 4 126.159 155.617 165.835 1 51.6 ? C14 PEV 1805 A 1 HETATM 26 C C15 PEV . . . G 4 126.931 156.458 164.821 1 51.6 ? C15 PEV 1805 A 1 HETATM 27 C C16 PEV . . . G 4 127.006 155.716 163.487 1 51.6 ? C16 PEV 1805 A 1 HETATM 28 C C17 PEV . . . G 4 125.78 156.044 162.638 1 51.6 ? C17 PEV 1805 A 1 HETATM 29 C C18 PEV . . . G 4 126.015 155.571 161.205 1 51.6 ? C18 PEV 1805 A 1 HETATM 30 C C19 PEV . . . G 4 124.885 156.062 160.304 1 51.6 ? C19 PEV 1805 A 1 HETATM 31 C C20 PEV . . . G 4 125.014 155.417 158.925 1 51.6 ? C20 PEV 1805 A 1 HETATM 32 C C21 PEV . . . G 4 123.916 155.948 158.006 1 51.6 ? C21 PEV 1805 A 1 HETATM 33 C C22 PEV . . . G 4 123.717 154.993 156.83 1 51.6 ? C22 PEV 1805 A 1 HETATM 34 C C23 PEV . . . G 4 122.777 155.629 155.807 1 51.6 ? C23 PEV 1805 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #