data_6XIW # _model_server_result.job_id otDt2VXbBySXAifmEGnXag _model_server_result.datetime_utc '2024-10-19 16:49:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1808}' # _entry.id 6XIW # _exptl.entry_id 6XIW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.007 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XIW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 207 A CYS 207 1_555 A SG CYS 239 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 229 A CYS 229 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 1046 A CYS 1046 1_555 A SG CYS 1057 A CYS 1057 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 1405 A CYS 1405 1_555 A SG CYS 1417 A CYS 1417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 226 B CYS 226 1_555 B SG CYS 313 B CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 304 B CYS 304 1_555 B SG CYS 341 B CYS 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 324 B CYS 324 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 330 B CYS 330 1_555 B SG CYS 376 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 334 B CYS 334 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C MET 286 A MET 286 1_555 A N TYS 287 A TYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TYS 287 A TYS 287 1_555 A N ARG 288 A ARG 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A ND2 ASN 1064 A ASN 1064 1_555 D C1 NAG . A NAG 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGV _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLGLYCEROL;2-VACCENOYL-1-PALMITOYL-SN-GLYCEROL-3-PHOSPHOGLYCEROL # _atom_sites.entry_id 6XIW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1801 1604 NAG NAG . D 3 NAG A 1 1802 1605 NAG NAG . E 4 PEV A 1 1803 1 PEV PEV . F 4 PEV A 1 1804 2 PEV PEV . G 4 PEV A 1 1805 3 PEV PEV . H 4 PEV A 1 1806 4 PEV PEV . I 4 PEV A 1 1807 5 PEV PEV . J 5 PGV A 1 1808 6 PGV PGV . K 5 PGV A 1 1809 7 PGV PGV . L 6 Y01 A 1 1810 8 Y01 Y01 . M 6 Y01 A 1 1811 9 Y01 Y01 . N 6 Y01 A 1 1812 10 Y01 Y01 . O 7 HOH A 1 1901 5 HOH HOH . O 7 HOH A 2 1902 4 HOH HOH . O 7 HOH A 3 1903 3 HOH HOH . O 7 HOH A 4 1904 1 HOH HOH . P 7 HOH B 1 501 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGV . . . J 5 125.195 174.636 133.326 1 44.47 ? P PGV 1808 A 1 HETATM 2 C C01 PGV . . . J 5 127.878 171.395 136.18 1 44.47 ? C01 PGV 1808 A 1 HETATM 3 C C02 PGV . . . J 5 126.785 171.502 135.096 1 44.47 ? C02 PGV 1808 A 1 HETATM 4 C C03 PGV . . . J 5 126.315 172.938 134.992 1 44.47 ? C03 PGV 1808 A 1 HETATM 5 C C04 PGV . . . J 5 124.229 175.57 131.08 1 44.47 ? C04 PGV 1808 A 1 HETATM 6 C C05 PGV . . . J 5 122.802 175.9 130.648 1 44.47 ? C05 PGV 1808 A 1 HETATM 7 C C06 PGV . . . J 5 121.846 175.644 131.813 1 44.47 ? C06 PGV 1808 A 1 HETATM 8 O O01 PGV . . . J 5 125.695 170.667 135.435 1 44.47 ? O01 PGV 1808 A 1 HETATM 9 O O02 PGV . . . J 5 125.947 168.697 134.354 1 44.47 ? O02 PGV 1808 A 1 HETATM 10 O O05 PGV . . . J 5 122.447 175.097 129.567 1 44.47 ? O05 PGV 1808 A 1 HETATM 11 O O06 PGV . . . J 5 122.294 176.338 132.944 1 44.47 ? O06 PGV 1808 A 1 HETATM 12 O O11 PGV . . . J 5 125.662 173.12 133.767 1 44.47 ? O11 PGV 1808 A 1 HETATM 13 O O12 PGV . . . J 5 124.203 174.536 132.022 1 44.47 ? O12 PGV 1808 A 1 HETATM 14 O O13 PGV . . . J 5 126.411 175.453 132.971 1 44.47 ? O13 PGV 1808 A 1 HETATM 15 O O14 PGV . . . J 5 124.459 175.297 134.473 1 44.47 ? O14 PGV 1808 A 1 HETATM 16 C C1 PGV . . . J 5 125.991 169.277 135.385 1 44.47 ? C1 PGV 1808 A 1 HETATM 17 C C2 PGV . . . J 5 126.369 168.514 136.68 1 44.47 ? C2 PGV 1808 A 1 HETATM 18 C C3 PGV . . . J 5 127.682 167.719 136.444 1 44.47 ? C3 PGV 1808 A 1 HETATM 19 C C4 PGV . . . J 5 128.651 167.951 137.633 1 44.47 ? C4 PGV 1808 A 1 HETATM 20 C C5 PGV . . . J 5 129.676 166.795 137.687 1 44.47 ? C5 PGV 1808 A 1 HETATM 21 C C6 PGV . . . J 5 130.113 166.547 139.153 1 44.47 ? C6 PGV 1808 A 1 HETATM 22 C C7 PGV . . . J 5 130.804 165.151 139.255 1 44.47 ? C7 PGV 1808 A 1 HETATM 23 C C8 PGV . . . J 5 131.342 164.929 140.697 1 44.47 ? C8 PGV 1808 A 1 HETATM 24 C C9 PGV . . . J 5 130.149 164.791 141.687 1 44.47 ? C9 PGV 1808 A 1 HETATM 25 C C10 PGV . . . J 5 130.692 164.732 143.136 1 44.47 ? C10 PGV 1808 A 1 HETATM 26 C C11 PGV . . . J 5 129.709 163.928 144.041 1 44.47 ? C11 PGV 1808 A 1 HETATM 27 C C12 PGV . . . J 5 130.045 163.693 145.322 1 44.47 ? C12 PGV 1808 A 1 HETATM 28 C C13 PGV . . . J 5 131.411 164.233 145.855 1 44.47 ? C13 PGV 1808 A 1 HETATM 29 C C14 PGV . . . J 5 131.506 164.041 147.388 1 44.47 ? C14 PGV 1808 A 1 HETATM 30 C C15 PGV . . . J 5 132.728 164.821 147.911 1 44.47 ? C15 PGV 1808 A 1 HETATM 31 C C16 PGV . . . J 5 132.866 164.604 149.439 1 44.47 ? C16 PGV 1808 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #