data_6XJT
#
_model_server_result.job_id            tq0CW9F02LiXmyd_DUZXDA 
_model_server_result.datetime_utc      '2024-10-31 18:14:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xjt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1101}' 
#
_entry.id    6XJT 
#
_exptl.entry_id    6XJT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.307 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-3-{3-[3,5-bis(trifluoromethyl)phenyl]-1H-1,2,4-triazol-1-yl}-2-(pyrimidin-5-yl)propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XJT 
_cell.length_a            106.675 
_cell.length_b            106.675 
_cell.length_c            306.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XJT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 505 C CYS 539 1_555 F C3 6L8 . C 6L8 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.696 ? 
metalc ? metalc1 A OG1 THR 24 A THR 24 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc2 A OG1 THR 42 A THR 42 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc3 D O3G GNP . A GNP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc4 D O1B GNP . A GNP 301 1_555 E MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.893 ? 
#
_chem_comp.formula           'C17 H12 F6 N6 O' 
_chem_comp.formula_weight    430.307 
_chem_comp.id                6L8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-3-{3-[3,5-bis(trifluoromethyl)phenyl]-1H-1,2,4-triazol-1-yl}-2-(pyrimidin-5-yl)propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3' N2' 6L8 doub 1 n y 
C3' N1' 6L8 sing 2 n y 
F1 C13 6L8 sing 3 n n 
N2' C4' 6L8 sing 4 n y 
N1' C2' 6L8 doub 5 n y 
C13 F2 6L8 sing 6 n n 
C13 C10 6L8 sing 7 n n 
C13 F3 6L8 sing 8 n n 
F4 C12 6L8 sing 9 n n 
C4' C1' 6L8 doub 10 n y 
F5 C12 6L8 sing 11 n n 
C9 C10 6L8 doub 12 n y 
C9 C8 6L8 sing 13 n y 
C2' C1' 6L8 sing 14 n y 
C10 C11 6L8 sing 15 n y 
C12 C8 6L8 sing 16 n n 
C12 F6 6L8 sing 17 n n 
C8 C7 6L8 doub 18 n y 
C11 C6 6L8 doub 19 n y 
C1' C2 6L8 sing 20 n n 
C7 C6 6L8 sing 21 n y 
C6 C5 6L8 sing 22 n n 
C5 N3 6L8 sing 23 n y 
C5 N4 6L8 doub 24 n y 
N3 C4 6L8 doub 25 n y 
N4 N2 6L8 sing 26 n y 
C2 C1 6L8 sing 27 n n 
C2 C3 6L8 sing 28 n n 
C4 N2 6L8 sing 29 n y 
C1 O1 6L8 doub 30 n n 
C1 N1 6L8 sing 31 n n 
N2 C3 6L8 sing 32 n n 
C9 H1 6L8 sing 33 n n 
C11 H2 6L8 sing 34 n n 
C7 H3 6L8 sing 35 n n 
C4 H4 6L8 sing 36 n n 
C3 H5 6L8 sing 37 n n 
C3 H6 6L8 sing 38 n n 
C2 H7 6L8 sing 39 n n 
C4' H8 6L8 sing 40 n n 
C3' H9 6L8 sing 41 n n 
C2' H10 6L8 sing 42 n n 
N1 H11 6L8 sing 43 n n 
N1 H12 6L8 sing 44 n n 
#
_atom_sites.entry_id                     6XJT 
_atom_sites.fract_transf_matrix[1][1]    0.009374 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009374 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003267 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GNP A 1 301 301 GNP GNP . 
E 5 MG A 1 302 302 MG MG . 
F 6 6L8 C 1 1101 1 6L8 860 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9 6L8 . . . F 6 18.494 17.097 27.065 1 46.5 ? C9 6L8 1101 C 1 
HETATM 2 C C10 6L8 . . . F 6 17.973 18.27 27.588 1 49.35 ? C10 6L8 1101 C 1 
HETATM 3 C C11 6L8 . . . F 6 18.828 19.244 28.082 1 48.07 ? C11 6L8 1101 C 1 
HETATM 4 C C6 6L8 . . . F 6 20.199 19.051 28.043 1 44.86 ? C6 6L8 1101 C 1 
HETATM 5 C C7 6L8 . . . F 6 20.717 17.88 27.523 1 43.54 ? C7 6L8 1101 C 1 
HETATM 6 C C8 6L8 . . . F 6 19.864 16.906 27.03 1 43.55 ? C8 6L8 1101 C 1 
HETATM 7 C C12 6L8 . . . F 6 20.454 15.625 26.462 1 45.05 ? C12 6L8 1101 C 1 
HETATM 8 C C13 6L8 . . . F 6 16.462 18.505 27.635 1 51.62 ? C13 6L8 1101 C 1 
HETATM 9 F F2 6L8 . . . F 6 16.168 19.677 27 1 47.95 ? F2 6L8 1101 C 1 
HETATM 10 F F1 6L8 . . . F 6 15.804 17.482 27.015 1 55.84 ? F1 6L8 1101 C 1 
HETATM 11 F F3 6L8 . . . F 6 16.059 18.578 28.937 1 62.12 ? F3 6L8 1101 C 1 
HETATM 12 F F6 6L8 . . . F 6 20.829 15.824 25.165 1 45.73 ? F6 6L8 1101 C 1 
HETATM 13 F F5 6L8 . . . F 6 19.541 14.613 26.533 1 48 ? F5 6L8 1101 C 1 
HETATM 14 F F4 6L8 . . . F 6 21.543 15.3 27.213 1 48.5 ? F4 6L8 1101 C 1 
HETATM 15 C C5 6L8 . . . F 6 21.148 20.12 28.587 1 49.26 ? C5 6L8 1101 C 1 
HETATM 16 N N3 6L8 . . . F 6 22.423 19.913 28.967 1 50.65 ? N3 6L8 1101 C 1 
HETATM 17 C C4 6L8 . . . F 6 22.913 21.092 29.391 1 51.24 ? C4 6L8 1101 C 1 
HETATM 18 N N2 6L8 . . . F 6 21.957 21.984 29.258 1 55.52 ? N2 6L8 1101 C 1 
HETATM 19 N N4 6L8 . . . F 6 20.868 21.388 28.773 1 50.98 ? N4 6L8 1101 C 1 
HETATM 20 C C3 6L8 . . . F 6 22.063 23.394 29.61 1 75.49 ? C3 6L8 1101 C 1 
HETATM 21 C C2 6L8 . . . F 6 22.079 24.321 28.395 1 75.65 ? C2 6L8 1101 C 1 
HETATM 22 C C1' 6L8 . . . F 6 23.148 23.865 27.388 1 75.39 ? C1' 6L8 1101 C 1 
HETATM 23 C C4' 6L8 . . . F 6 24.372 23.359 27.827 1 81.99 ? C4' 6L8 1101 C 1 
HETATM 24 N N2' 6L8 . . . F 6 25.264 22.98 26.935 1 78.89 ? N2' 6L8 1101 C 1 
HETATM 25 C C3' 6L8 . . . F 6 25.034 23.075 25.644 1 78.95 ? C3' 6L8 1101 C 1 
HETATM 26 N N1' 6L8 . . . F 6 23.896 23.555 25.186 1 81.31 ? N1' 6L8 1101 C 1 
HETATM 27 C C2' 6L8 . . . F 6 22.949 23.953 26.017 1 73.67 ? C2' 6L8 1101 C 1 
HETATM 28 C C1 6L8 . . . F 6 20.666 24.316 27.811 1 75.18 ? C1 6L8 1101 C 1 
HETATM 29 O O1 6L8 . . . F 6 20.328 23.497 27.024 1 68.9 ? O1 6L8 1101 C 1 
HETATM 30 N N1 6L8 . . . F 6 19.721 25.325 28.242 1 70.17 ? N1 6L8 1101 C 1 
HETATM 31 H H1 6L8 . . . F 6 17.923 16.441 26.734 1 55.81 ? H1 6L8 1101 C 1 
HETATM 32 H H2 6L8 . . . F 6 18.48 20.033 28.432 1 57.69 ? H2 6L8 1101 C 1 
HETATM 33 H H3 6L8 . . . F 6 21.637 17.748 27.5 1 52.24 ? H3 6L8 1101 C 1 
HETATM 34 H H4 6L8 . . . F 6 23.773 21.25 29.708 1 61.48 ? H4 6L8 1101 C 1 
HETATM 35 H H5 6L8 . . . F 6 22.88 23.528 30.115 1 90.59 ? H5 6L8 1101 C 1 
HETATM 36 H H6 6L8 . . . F 6 21.308 23.631 30.171 1 90.59 ? H6 6L8 1101 C 1 
HETATM 37 H H7 6L8 . . . F 6 22.292 25.22 28.691 1 90.79 ? H7 6L8 1101 C 1 
HETATM 38 H H8 6L8 . . . F 6 24.551 23.282 28.737 1 98.38 ? H8 6L8 1101 C 1 
HETATM 39 H H9 6L8 . . . F 6 25.688 22.801 25.042 1 94.74 ? H9 6L8 1101 C 1 
HETATM 40 H H10 6L8 . . . F 6 22.148 24.288 25.684 1 88.4 ? H10 6L8 1101 C 1 
HETATM 41 H H11 6L8 . . . F 6 18.923 25.331 27.921 1 84.2 ? H11 6L8 1101 C 1 
HETATM 42 H H12 6L8 . . . F 6 19.96 25.92 28.814 1 84.2 ? H12 6L8 1101 C 1 
#
_model_server_stats.io_time_ms              123 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           42 
#