data_6XK2 # _model_server_result.job_id L2nYM66Uua_FYmRk6cs8ng _model_server_result.datetime_utc '2024-11-27 19:10:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 6XK2 # _exptl.entry_id 6XK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.27 _cell.angle_gamma 90 _cell.entry_id 6XK2 _cell.length_a 77.17 _cell.length_b 84.57 _cell.length_c 98.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,M,N,O,R 1 1 B,C,H,I,J,K,L,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OE2 GLU 196 B GLU 188 1_555 J NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? metalc ? metalc2 M O2A ADP . D ADP 401 1_555 N NA NA . D NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.164 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XK2 _atom_sites.fract_transf_matrix[1][1] 0.012958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001196 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 401 400 ADP ADP . F 3 EDO A 1 402 401 EDO EDO . G 4 NA A 1 403 405 NA NA . H 2 ADP B 1 401 400 ADP ADP . I 3 EDO B 1 402 401 EDO EDO . J 4 NA B 1 403 405 NA NA . K 2 ADP C 1 400 400 ADP ADP . L 3 EDO C 1 401 401 EDO EDO . M 2 ADP D 1 401 400 ADP ADP . N 4 NA D 1 402 405 NA NA . O 5 HOH A 1 501 193 HOH HOH . O 5 HOH A 2 502 19 HOH HOH . O 5 HOH A 3 503 74 HOH HOH . O 5 HOH A 4 504 114 HOH HOH . O 5 HOH A 5 505 43 HOH HOH . O 5 HOH A 6 506 24 HOH HOH . O 5 HOH A 7 507 108 HOH HOH . O 5 HOH A 8 508 22 HOH HOH . O 5 HOH A 9 509 118 HOH HOH . O 5 HOH A 10 510 124 HOH HOH . O 5 HOH A 11 511 80 HOH HOH . O 5 HOH A 12 512 261 HOH HOH . O 5 HOH A 13 513 32 HOH HOH . O 5 HOH A 14 514 129 HOH HOH . O 5 HOH A 15 515 121 HOH HOH . O 5 HOH A 16 516 106 HOH HOH . O 5 HOH A 17 517 202 HOH HOH . O 5 HOH A 18 518 81 HOH HOH . O 5 HOH A 19 519 191 HOH HOH . O 5 HOH A 20 520 189 HOH HOH . O 5 HOH A 21 521 84 HOH HOH . O 5 HOH A 22 522 116 HOH HOH . O 5 HOH A 23 523 188 HOH HOH . O 5 HOH A 24 524 196 HOH HOH . O 5 HOH A 25 525 115 HOH HOH . O 5 HOH A 26 526 127 HOH HOH . O 5 HOH A 27 527 200 HOH HOH . O 5 HOH A 28 528 26 HOH HOH . O 5 HOH A 29 529 186 HOH HOH . O 5 HOH A 30 530 194 HOH HOH . O 5 HOH A 31 531 123 HOH HOH . O 5 HOH A 32 532 187 HOH HOH . O 5 HOH A 33 533 198 HOH HOH . O 5 HOH A 34 534 259 HOH HOH . O 5 HOH A 35 535 34 HOH HOH . O 5 HOH A 36 536 195 HOH HOH . O 5 HOH A 37 537 83 HOH HOH . O 5 HOH A 38 538 14 HOH HOH . O 5 HOH A 39 539 122 HOH HOH . O 5 HOH A 40 540 199 HOH HOH . O 5 HOH A 41 541 113 HOH HOH . O 5 HOH A 42 542 117 HOH HOH . O 5 HOH A 43 543 203 HOH HOH . O 5 HOH A 44 544 102 HOH HOH . O 5 HOH A 45 545 192 HOH HOH . O 5 HOH A 46 546 104 HOH HOH . O 5 HOH A 47 547 119 HOH HOH . O 5 HOH A 48 548 66 HOH HOH . O 5 HOH A 49 549 204 HOH HOH . O 5 HOH A 50 550 126 HOH HOH . O 5 HOH A 51 551 109 HOH HOH . O 5 HOH A 52 552 39 HOH HOH . O 5 HOH A 53 553 107 HOH HOH . O 5 HOH A 54 554 260 HOH HOH . O 5 HOH A 55 555 103 HOH HOH . O 5 HOH A 56 556 63 HOH HOH . O 5 HOH A 57 557 185 HOH HOH . P 5 HOH B 1 501 143 HOH HOH . P 5 HOH B 2 502 147 HOH HOH . P 5 HOH B 3 503 216 HOH HOH . P 5 HOH B 4 504 154 HOH HOH . P 5 HOH B 5 505 263 HOH HOH . P 5 HOH B 6 506 208 HOH HOH . P 5 HOH B 7 507 12 HOH HOH . P 5 HOH B 8 508 220 HOH HOH . P 5 HOH B 9 509 137 HOH HOH . P 5 HOH B 10 510 23 HOH HOH . P 5 HOH B 11 511 150 HOH HOH . P 5 HOH B 12 512 153 HOH HOH . P 5 HOH B 13 513 18 HOH HOH . P 5 HOH B 14 514 135 HOH HOH . P 5 HOH B 15 515 30 HOH HOH . P 5 HOH B 16 516 131 HOH HOH . P 5 HOH B 17 517 264 HOH HOH . P 5 HOH B 18 518 90 HOH HOH . P 5 HOH B 19 519 7 HOH HOH . P 5 HOH B 20 520 144 HOH HOH . P 5 HOH B 21 521 27 HOH HOH . P 5 HOH B 22 522 136 HOH HOH . P 5 HOH B 23 523 146 HOH HOH . P 5 HOH B 24 524 132 HOH HOH . P 5 HOH B 25 525 5 HOH HOH . P 5 HOH B 26 526 86 HOH HOH . P 5 HOH B 27 527 211 HOH HOH . P 5 HOH B 28 528 139 HOH HOH . P 5 HOH B 29 529 13 HOH HOH . P 5 HOH B 30 530 213 HOH HOH . P 5 HOH B 31 531 88 HOH HOH . P 5 HOH B 32 532 215 HOH HOH . P 5 HOH B 33 533 152 HOH HOH . P 5 HOH B 34 534 36 HOH HOH . P 5 HOH B 35 535 210 HOH HOH . P 5 HOH B 36 536 89 HOH HOH . P 5 HOH B 37 537 141 HOH HOH . P 5 HOH B 38 538 15 HOH HOH . P 5 HOH B 39 539 45 HOH HOH . P 5 HOH B 40 540 101 HOH HOH . P 5 HOH B 41 541 219 HOH HOH . P 5 HOH B 42 542 40 HOH HOH . P 5 HOH B 43 543 151 HOH HOH . P 5 HOH B 44 544 134 HOH HOH . P 5 HOH B 45 545 212 HOH HOH . P 5 HOH B 46 546 262 HOH HOH . P 5 HOH B 47 547 52 HOH HOH . P 5 HOH B 48 548 149 HOH HOH . P 5 HOH B 49 549 217 HOH HOH . P 5 HOH B 50 550 218 HOH HOH . P 5 HOH B 51 551 201 HOH HOH . P 5 HOH B 52 552 206 HOH HOH . P 5 HOH B 53 553 145 HOH HOH . P 5 HOH B 54 554 87 HOH HOH . P 5 HOH B 55 555 207 HOH HOH . Q 5 HOH C 1 501 158 HOH HOH . Q 5 HOH C 2 502 165 HOH HOH . Q 5 HOH C 3 503 163 HOH HOH . Q 5 HOH C 4 504 268 HOH HOH . Q 5 HOH C 5 505 231 HOH HOH . Q 5 HOH C 6 506 230 HOH HOH . Q 5 HOH C 7 507 98 HOH HOH . Q 5 HOH C 8 508 224 HOH HOH . Q 5 HOH C 9 509 232 HOH HOH . Q 5 HOH C 10 510 155 HOH HOH . Q 5 HOH C 11 511 50 HOH HOH . Q 5 HOH C 12 512 164 HOH HOH . Q 5 HOH C 13 513 76 HOH HOH . Q 5 HOH C 14 514 91 HOH HOH . Q 5 HOH C 15 515 241 HOH HOH . Q 5 HOH C 16 516 156 HOH HOH . Q 5 HOH C 17 517 225 HOH HOH . Q 5 HOH C 18 518 222 HOH HOH . Q 5 HOH C 19 519 238 HOH HOH . Q 5 HOH C 20 520 97 HOH HOH . Q 5 HOH C 21 521 161 HOH HOH . Q 5 HOH C 22 522 235 HOH HOH . Q 5 HOH C 23 523 96 HOH HOH . Q 5 HOH C 24 524 41 HOH HOH . Q 5 HOH C 25 525 239 HOH HOH . Q 5 HOH C 26 526 227 HOH HOH . Q 5 HOH C 27 527 160 HOH HOH . Q 5 HOH C 28 528 258 HOH HOH . Q 5 HOH C 29 529 223 HOH HOH . R 5 HOH D 1 501 257 HOH HOH . R 5 HOH D 2 502 247 HOH HOH . R 5 HOH D 3 503 111 HOH HOH . R 5 HOH D 4 504 133 HOH HOH . R 5 HOH D 5 505 178 HOH HOH . R 5 HOH D 6 506 175 HOH HOH . R 5 HOH D 7 507 180 HOH HOH . R 5 HOH D 8 508 171 HOH HOH . R 5 HOH D 9 509 172 HOH HOH . R 5 HOH D 10 510 176 HOH HOH . R 5 HOH D 11 511 174 HOH HOH . R 5 HOH D 12 512 182 HOH HOH . R 5 HOH D 13 513 173 HOH HOH . R 5 HOH D 14 514 159 HOH HOH . R 5 HOH D 15 515 250 HOH HOH . R 5 HOH D 16 516 169 HOH HOH . R 5 HOH D 17 517 181 HOH HOH . R 5 HOH D 18 518 252 HOH HOH . R 5 HOH D 19 519 243 HOH HOH . R 5 HOH D 20 520 255 HOH HOH . R 5 HOH D 21 521 100 HOH HOH . R 5 HOH D 22 522 170 HOH HOH . R 5 HOH D 23 523 267 HOH HOH . R 5 HOH D 24 524 244 HOH HOH . R 5 HOH D 25 525 177 HOH HOH . R 5 HOH D 26 526 246 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -46.382 _atom_site.Cartn_y -27.554 _atom_site.Cartn_z -2.706 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #