data_6XK4 # _model_server_result.job_id WvQRgGnZcu0xRHmbh6hC4g _model_server_result.datetime_utc '2025-08-22 18:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 6XK4 # _exptl.entry_id 6XK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.541 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-{[3-({[4-(6-aminopyridin-2-yl)butyl]amino}methyl)phenoxy]methyl}quinolin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XK4 _cell.length_a 80.49 _cell.length_b 95.05 _cell.length_c 62.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 160.98 190.1 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.339 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H29 N5 O' _chem_comp.formula_weight 427.541 _chem_comp.id V5D _chem_comp.mon_nstd_flag . _chem_comp.name 7-{[3-({[4-(6-aminopyridin-2-yl)butyl]amino}methyl)phenoxy]methyl}quinolin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C14 V5D doub 453 n y C15 C16 V5D sing 454 n y C14 C13 V5D sing 455 n y N27 C26 V5D sing 456 n n C16 C17 V5D doub 457 n y C26 C25 V5D doub 458 n y C26 N28 V5D sing 459 n y C25 C24 V5D sing 460 n y C13 C12 V5D sing 461 n n C13 C31 V5D doub 462 n y N28 C29 V5D doub 463 n y C12 N11 V5D sing 464 n n C24 C23 V5D doub 465 n y C17 C31 V5D sing 466 n y C17 O18 V5D sing 467 n n C29 C23 V5D sing 468 n y C29 C30 V5D sing 469 n y N11 C10 V5D sing 470 n n C23 C22 V5D sing 471 n y C10 C09 V5D sing 472 n n C30 C20 V5D doub 473 n y C22 C21 V5D doub 474 n y O18 C19 V5D sing 475 n n C08 C09 V5D sing 476 n n C08 C07 V5D sing 477 n n C20 C21 V5D sing 478 n y C20 C19 V5D sing 479 n n C05 C04 V5D doub 480 n y C05 C06 V5D sing 481 n y C07 C06 V5D sing 482 n n C04 C03 V5D sing 483 n y C06 N32 V5D doub 484 n y C03 C02 V5D doub 485 n y N32 C02 V5D sing 486 n y C02 N01 V5D sing 487 n n C03 H1 V5D sing 488 n n C04 H2 V5D sing 489 n n C05 H3 V5D sing 490 n n C07 H4 V5D sing 491 n n C07 H5 V5D sing 492 n n C08 H6 V5D sing 493 n n C08 H7 V5D sing 494 n n C09 H8 V5D sing 495 n n C09 H9 V5D sing 496 n n C10 H10 V5D sing 497 n n C10 H11 V5D sing 498 n n C12 H12 V5D sing 499 n n C12 H13 V5D sing 500 n n C14 H14 V5D sing 501 n n C15 H15 V5D sing 502 n n C16 H16 V5D sing 503 n n C19 H17 V5D sing 504 n n C19 H18 V5D sing 505 n n C21 H19 V5D sing 506 n n C22 H20 V5D sing 507 n n C24 H21 V5D sing 508 n n C25 H22 V5D sing 509 n n C30 H23 V5D sing 510 n n C31 H24 V5D sing 511 n n N01 H25 V5D sing 512 n n N01 H26 V5D sing 513 n n N11 H27 V5D sing 514 n n N27 H29 V5D sing 515 n n N27 H30 V5D sing 516 n n # _atom_sites.entry_id 6XK4 _atom_sites.fract_transf_matrix[1][1] 0.012424 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015939 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 V5D A 1 902 1 V5D PWA . D 4 CL A 1 903 1 CL CL . E 5 GOL A 1 904 1 GOL GOL . F 6 HOH A 1 1001 24 HOH HOH . F 6 HOH A 2 1002 20 HOH HOH . F 6 HOH A 3 1003 66 HOH HOH . F 6 HOH A 4 1004 30 HOH HOH . F 6 HOH A 5 1005 84 HOH HOH . F 6 HOH A 6 1006 53 HOH HOH . F 6 HOH A 7 1007 78 HOH HOH . F 6 HOH A 8 1008 100 HOH HOH . F 6 HOH A 9 1009 62 HOH HOH . F 6 HOH A 10 1010 11 HOH HOH . F 6 HOH A 11 1011 49 HOH HOH . F 6 HOH A 12 1012 48 HOH HOH . F 6 HOH A 13 1013 52 HOH HOH . F 6 HOH A 14 1014 94 HOH HOH . F 6 HOH A 15 1015 18 HOH HOH . F 6 HOH A 16 1016 36 HOH HOH . F 6 HOH A 17 1017 41 HOH HOH . F 6 HOH A 18 1018 61 HOH HOH . F 6 HOH A 19 1019 3 HOH HOH . F 6 HOH A 20 1020 6 HOH HOH . F 6 HOH A 21 1021 26 HOH HOH . F 6 HOH A 22 1022 1 HOH HOH . F 6 HOH A 23 1023 10 HOH HOH . F 6 HOH A 24 1024 12 HOH HOH . F 6 HOH A 25 1025 16 HOH HOH . F 6 HOH A 26 1026 75 HOH HOH . F 6 HOH A 27 1027 97 HOH HOH . F 6 HOH A 28 1028 38 HOH HOH . F 6 HOH A 29 1029 15 HOH HOH . F 6 HOH A 30 1030 93 HOH HOH . F 6 HOH A 31 1031 13 HOH HOH . F 6 HOH A 32 1032 37 HOH HOH . F 6 HOH A 33 1033 51 HOH HOH . F 6 HOH A 34 1034 45 HOH HOH . F 6 HOH A 35 1035 70 HOH HOH . F 6 HOH A 36 1036 35 HOH HOH . F 6 HOH A 37 1037 8 HOH HOH . F 6 HOH A 38 1038 34 HOH HOH . F 6 HOH A 39 1039 83 HOH HOH . F 6 HOH A 40 1040 14 HOH HOH . F 6 HOH A 41 1041 40 HOH HOH . F 6 HOH A 42 1042 65 HOH HOH . F 6 HOH A 43 1043 23 HOH HOH . F 6 HOH A 44 1044 9 HOH HOH . F 6 HOH A 45 1045 7 HOH HOH . F 6 HOH A 46 1046 81 HOH HOH . F 6 HOH A 47 1047 31 HOH HOH . F 6 HOH A 48 1048 5 HOH HOH . F 6 HOH A 49 1049 32 HOH HOH . F 6 HOH A 50 1050 90 HOH HOH . F 6 HOH A 51 1051 47 HOH HOH . F 6 HOH A 52 1052 76 HOH HOH . F 6 HOH A 53 1053 101 HOH HOH . F 6 HOH A 54 1054 74 HOH HOH . F 6 HOH A 55 1055 73 HOH HOH . F 6 HOH A 56 1056 86 HOH HOH . F 6 HOH A 57 1057 80 HOH HOH . F 6 HOH A 58 1058 63 HOH HOH . F 6 HOH A 59 1059 22 HOH HOH . F 6 HOH A 60 1060 99 HOH HOH . F 6 HOH A 61 1061 59 HOH HOH . F 6 HOH A 62 1062 19 HOH HOH . F 6 HOH A 63 1063 64 HOH HOH . F 6 HOH A 64 1064 82 HOH HOH . F 6 HOH A 65 1065 50 HOH HOH . F 6 HOH A 66 1066 79 HOH HOH . F 6 HOH A 67 1067 87 HOH HOH . F 6 HOH A 68 1068 98 HOH HOH . F 6 HOH A 69 1069 96 HOH HOH . F 6 HOH A 70 1070 46 HOH HOH . F 6 HOH A 71 1071 25 HOH HOH . F 6 HOH A 72 1072 2 HOH HOH . F 6 HOH A 73 1073 4 HOH HOH . F 6 HOH A 74 1074 29 HOH HOH . F 6 HOH A 75 1075 54 HOH HOH . F 6 HOH A 76 1076 28 HOH HOH . F 6 HOH A 77 1077 33 HOH HOH . F 6 HOH A 78 1078 17 HOH HOH . F 6 HOH A 79 1079 27 HOH HOH . F 6 HOH A 80 1080 55 HOH HOH . F 6 HOH A 81 1081 69 HOH HOH . F 6 HOH A 82 1082 43 HOH HOH . F 6 HOH A 83 1083 39 HOH HOH . F 6 HOH A 84 1084 44 HOH HOH . F 6 HOH A 85 1085 56 HOH HOH . F 6 HOH A 86 1086 89 HOH HOH . F 6 HOH A 87 1087 68 HOH HOH . F 6 HOH A 88 1088 72 HOH HOH . F 6 HOH A 89 1089 77 HOH HOH . F 6 HOH A 90 1090 71 HOH HOH . F 6 HOH A 91 1091 88 HOH HOH . F 6 HOH A 92 1092 42 HOH HOH . F 6 HOH A 93 1093 21 HOH HOH . F 6 HOH A 94 1094 85 HOH HOH . F 6 HOH A 95 1095 67 HOH HOH . F 6 HOH A 96 1096 92 HOH HOH . F 6 HOH A 97 1097 57 HOH HOH . F 6 HOH A 98 1098 95 HOH HOH . F 6 HOH A 99 1099 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 V5D . . . C 3 82.692 112.837 88.646 1 30.67 ? C02 V5D 902 A 1 HETATM 2 C C03 V5D . . . C 3 82.352 113.981 87.913 1 30.44 ? C03 V5D 902 A 1 HETATM 3 C C04 V5D . . . C 3 82.745 114.106 86.584 1 28.3 ? C04 V5D 902 A 1 HETATM 4 C C05 V5D . . . C 3 83.483 113.069 86.017 1 27.11 ? C05 V5D 902 A 1 HETATM 5 C C06 V5D . . . C 3 83.813 111.941 86.793 1 29.22 ? C06 V5D 902 A 1 HETATM 6 C C07 V5D . . . C 3 84.611 110.795 86.188 1 32.92 ? C07 V5D 902 A 1 HETATM 7 C C08 V5D . . . C 3 85.935 111.208 85.448 1 39.93 ? C08 V5D 902 A 1 HETATM 8 C C09 V5D . . . C 3 87.081 110.172 85.707 1 43.85 ? C09 V5D 902 A 1 HETATM 9 C C10 V5D . . . C 3 88.059 110.044 84.498 1 50.75 ? C10 V5D 902 A 1 HETATM 10 C C12 V5D . . . C 3 89.744 108.616 83.732 1 59.29 ? C12 V5D 902 A 1 HETATM 11 C C13 V5D . . . C 3 90.116 107.152 83.484 1 69.43 ? C13 V5D 902 A 1 HETATM 12 C C14 V5D . . . C 3 90.507 106.727 82.187 1 63.81 ? C14 V5D 902 A 1 HETATM 13 C C15 V5D . . . C 3 90.844 105.382 81.965 1 67.41 ? C15 V5D 902 A 1 HETATM 14 C C16 V5D . . . C 3 90.795 104.449 83.039 1 58.67 ? C16 V5D 902 A 1 HETATM 15 C C17 V5D . . . C 3 90.404 104.874 84.334 1 64.65 ? C17 V5D 902 A 1 HETATM 16 C C19 V5D . . . C 3 89.174 103.909 86.192 1 70.49 ? C19 V5D 902 A 1 HETATM 17 C C20 V5D . . . C 3 88.177 102.877 85.581 1 70.02 ? C20 V5D 902 A 1 HETATM 18 C C21 V5D . . . C 3 86.808 103.092 85.694 1 62.07 ? C21 V5D 902 A 1 HETATM 19 C C22 V5D . . . C 3 85.898 102.159 85.141 1 58.6 ? C22 V5D 902 A 1 HETATM 20 C C23 V5D . . . C 3 86.39 100.993 84.467 1 58.61 ? C23 V5D 902 A 1 HETATM 21 C C24 V5D . . . C 3 85.47 100.048 83.907 1 57.4 ? C24 V5D 902 A 1 HETATM 22 C C25 V5D . . . C 3 85.972 98.929 83.262 1 56.17 ? C25 V5D 902 A 1 HETATM 23 C C26 V5D . . . C 3 87.362 98.752 83.175 1 59.52 ? C26 V5D 902 A 1 HETATM 24 C C29 V5D . . . C 3 87.732 100.786 84.361 1 59.14 ? C29 V5D 902 A 1 HETATM 25 C C30 V5D . . . C 3 88.655 101.731 84.921 1 61.51 ? C30 V5D 902 A 1 HETATM 26 C C31 V5D . . . C 3 90.067 106.214 84.556 1 63.01 ? C31 V5D 902 A 1 HETATM 27 N N01 V5D . . . C 3 82.29 112.7 90.01 1 25.23 ? N01 V5D 902 A 1 HETATM 28 N N11 V5D . . . C 3 88.493 108.677 84.37 1 56.68 ? N11 V5D 902 A 1 HETATM 29 N N27 V5D . . . C 3 87.883 97.623 82.523 1 62.8 ? N27 V5D 902 A 1 HETATM 30 N N28 V5D . . . C 3 88.199 99.663 83.714 1 65.36 ? N28 V5D 902 A 1 HETATM 31 N N32 V5D . . . C 3 83.412 111.847 88.061 1 26.46 ? N32 V5D 902 A 1 HETATM 32 O O18 V5D . . . C 3 90.361 103.911 85.425 1 70.2 ? O18 V5D 902 A 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 730 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #