data_6XK5
#
_model_server_result.job_id            7sbAVpWtmEuQAKo1wr1Qkw 
_model_server_result.datetime_utc      '2024-11-30 16:56:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xk5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":906}' 
#
_entry.id    6XK5 
#
_exptl.entry_id    6XK5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XK5 
_cell.length_a            80.32 
_cell.length_b            94.99 
_cell.length_c            61.95 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XK5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             66 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              66 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              901 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.387 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6XK5 
_atom_sites.fract_transf_matrix[1][1]    0.01245 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010527 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 901 901 HEM HEM . 
C 3 V4Y A 1 902 1 V4Y PWA . 
D 4 CL A 1 903 1 CL CL . 
E 5 GOL A 1 904 1 GOL GOL . 
F 5 GOL A 1 905 2 GOL GOL . 
G 5 GOL A 1 906 3 GOL GOL . 
H 6 HOH A 1 1001 172 HOH HOH . 
H 6 HOH A 2 1002 160 HOH HOH . 
H 6 HOH A 3 1003 108 HOH HOH . 
H 6 HOH A 4 1004 116 HOH HOH . 
H 6 HOH A 5 1005 152 HOH HOH . 
H 6 HOH A 6 1006 182 HOH HOH . 
H 6 HOH A 7 1007 147 HOH HOH . 
H 6 HOH A 8 1008 154 HOH HOH . 
H 6 HOH A 9 1009 166 HOH HOH . 
H 6 HOH A 10 1010 158 HOH HOH . 
H 6 HOH A 11 1011 41 HOH HOH . 
H 6 HOH A 12 1012 177 HOH HOH . 
H 6 HOH A 13 1013 71 HOH HOH . 
H 6 HOH A 14 1014 15 HOH HOH . 
H 6 HOH A 15 1015 76 HOH HOH . 
H 6 HOH A 16 1016 1 HOH HOH . 
H 6 HOH A 17 1017 9 HOH HOH . 
H 6 HOH A 18 1018 196 HOH HOH . 
H 6 HOH A 19 1019 131 HOH HOH . 
H 6 HOH A 20 1020 84 HOH HOH . 
H 6 HOH A 21 1021 56 HOH HOH . 
H 6 HOH A 22 1022 201 HOH HOH . 
H 6 HOH A 23 1023 188 HOH HOH . 
H 6 HOH A 24 1024 123 HOH HOH . 
H 6 HOH A 25 1025 173 HOH HOH . 
H 6 HOH A 26 1026 135 HOH HOH . 
H 6 HOH A 27 1027 72 HOH HOH . 
H 6 HOH A 28 1028 83 HOH HOH . 
H 6 HOH A 29 1029 58 HOH HOH . 
H 6 HOH A 30 1030 190 HOH HOH . 
H 6 HOH A 31 1031 133 HOH HOH . 
H 6 HOH A 32 1032 7 HOH HOH . 
H 6 HOH A 33 1033 40 HOH HOH . 
H 6 HOH A 34 1034 202 HOH HOH . 
H 6 HOH A 35 1035 92 HOH HOH . 
H 6 HOH A 36 1036 65 HOH HOH . 
H 6 HOH A 37 1037 33 HOH HOH . 
H 6 HOH A 38 1038 25 HOH HOH . 
H 6 HOH A 39 1039 192 HOH HOH . 
H 6 HOH A 40 1040 50 HOH HOH . 
H 6 HOH A 41 1041 145 HOH HOH . 
H 6 HOH A 42 1042 156 HOH HOH . 
H 6 HOH A 43 1043 42 HOH HOH . 
H 6 HOH A 44 1044 99 HOH HOH . 
H 6 HOH A 45 1045 2 HOH HOH . 
H 6 HOH A 46 1046 143 HOH HOH . 
H 6 HOH A 47 1047 27 HOH HOH . 
H 6 HOH A 48 1048 5 HOH HOH . 
H 6 HOH A 49 1049 20 HOH HOH . 
H 6 HOH A 50 1050 87 HOH HOH . 
H 6 HOH A 51 1051 48 HOH HOH . 
H 6 HOH A 52 1052 104 HOH HOH . 
H 6 HOH A 53 1053 35 HOH HOH . 
H 6 HOH A 54 1054 90 HOH HOH . 
H 6 HOH A 55 1055 14 HOH HOH . 
H 6 HOH A 56 1056 28 HOH HOH . 
H 6 HOH A 57 1057 16 HOH HOH . 
H 6 HOH A 58 1058 174 HOH HOH . 
H 6 HOH A 59 1059 13 HOH HOH . 
H 6 HOH A 60 1060 103 HOH HOH . 
H 6 HOH A 61 1061 94 HOH HOH . 
H 6 HOH A 62 1062 60 HOH HOH . 
H 6 HOH A 63 1063 61 HOH HOH . 
H 6 HOH A 64 1064 24 HOH HOH . 
H 6 HOH A 65 1065 148 HOH HOH . 
H 6 HOH A 66 1066 98 HOH HOH . 
H 6 HOH A 67 1067 11 HOH HOH . 
H 6 HOH A 68 1068 77 HOH HOH . 
H 6 HOH A 69 1069 127 HOH HOH . 
H 6 HOH A 70 1070 57 HOH HOH . 
H 6 HOH A 71 1071 19 HOH HOH . 
H 6 HOH A 72 1072 122 HOH HOH . 
H 6 HOH A 73 1073 52 HOH HOH . 
H 6 HOH A 74 1074 194 HOH HOH . 
H 6 HOH A 75 1075 34 HOH HOH . 
H 6 HOH A 76 1076 43 HOH HOH . 
H 6 HOH A 77 1077 44 HOH HOH . 
H 6 HOH A 78 1078 37 HOH HOH . 
H 6 HOH A 79 1079 4 HOH HOH . 
H 6 HOH A 80 1080 47 HOH HOH . 
H 6 HOH A 81 1081 10 HOH HOH . 
H 6 HOH A 82 1082 68 HOH HOH . 
H 6 HOH A 83 1083 96 HOH HOH . 
H 6 HOH A 84 1084 55 HOH HOH . 
H 6 HOH A 85 1085 112 HOH HOH . 
H 6 HOH A 86 1086 162 HOH HOH . 
H 6 HOH A 87 1087 183 HOH HOH . 
H 6 HOH A 88 1088 17 HOH HOH . 
H 6 HOH A 89 1089 88 HOH HOH . 
H 6 HOH A 90 1090 74 HOH HOH . 
H 6 HOH A 91 1091 63 HOH HOH . 
H 6 HOH A 92 1092 46 HOH HOH . 
H 6 HOH A 93 1093 70 HOH HOH . 
H 6 HOH A 94 1094 39 HOH HOH . 
H 6 HOH A 95 1095 21 HOH HOH . 
H 6 HOH A 96 1096 82 HOH HOH . 
H 6 HOH A 97 1097 30 HOH HOH . 
H 6 HOH A 98 1098 12 HOH HOH . 
H 6 HOH A 99 1099 86 HOH HOH . 
H 6 HOH A 100 1100 6 HOH HOH . 
H 6 HOH A 101 1101 153 HOH HOH . 
H 6 HOH A 102 1102 155 HOH HOH . 
H 6 HOH A 103 1103 22 HOH HOH . 
H 6 HOH A 104 1104 8 HOH HOH . 
H 6 HOH A 105 1105 102 HOH HOH . 
H 6 HOH A 106 1106 31 HOH HOH . 
H 6 HOH A 107 1107 119 HOH HOH . 
H 6 HOH A 108 1108 29 HOH HOH . 
H 6 HOH A 109 1109 45 HOH HOH . 
H 6 HOH A 110 1110 163 HOH HOH . 
H 6 HOH A 111 1111 67 HOH HOH . 
H 6 HOH A 112 1112 66 HOH HOH . 
H 6 HOH A 113 1113 32 HOH HOH . 
H 6 HOH A 114 1114 129 HOH HOH . 
H 6 HOH A 115 1115 51 HOH HOH . 
H 6 HOH A 116 1116 93 HOH HOH . 
H 6 HOH A 117 1117 178 HOH HOH . 
H 6 HOH A 118 1118 81 HOH HOH . 
H 6 HOH A 119 1119 23 HOH HOH . 
H 6 HOH A 120 1120 91 HOH HOH . 
H 6 HOH A 121 1121 85 HOH HOH . 
H 6 HOH A 122 1122 120 HOH HOH . 
H 6 HOH A 123 1123 128 HOH HOH . 
H 6 HOH A 124 1124 111 HOH HOH . 
H 6 HOH A 125 1125 144 HOH HOH . 
H 6 HOH A 126 1126 110 HOH HOH . 
H 6 HOH A 127 1127 97 HOH HOH . 
H 6 HOH A 128 1128 159 HOH HOH . 
H 6 HOH A 129 1129 18 HOH HOH . 
H 6 HOH A 130 1130 3 HOH HOH . 
H 6 HOH A 131 1131 136 HOH HOH . 
H 6 HOH A 132 1132 75 HOH HOH . 
H 6 HOH A 133 1133 130 HOH HOH . 
H 6 HOH A 134 1134 53 HOH HOH . 
H 6 HOH A 135 1135 117 HOH HOH . 
H 6 HOH A 136 1136 187 HOH HOH . 
H 6 HOH A 137 1137 151 HOH HOH . 
H 6 HOH A 138 1138 101 HOH HOH . 
H 6 HOH A 139 1139 142 HOH HOH . 
H 6 HOH A 140 1140 78 HOH HOH . 
H 6 HOH A 141 1141 140 HOH HOH . 
H 6 HOH A 142 1142 100 HOH HOH . 
H 6 HOH A 143 1143 169 HOH HOH . 
H 6 HOH A 144 1144 26 HOH HOH . 
H 6 HOH A 145 1145 107 HOH HOH . 
H 6 HOH A 146 1146 132 HOH HOH . 
H 6 HOH A 147 1147 38 HOH HOH . 
H 6 HOH A 148 1148 80 HOH HOH . 
H 6 HOH A 149 1149 181 HOH HOH . 
H 6 HOH A 150 1150 54 HOH HOH . 
H 6 HOH A 151 1151 150 HOH HOH . 
H 6 HOH A 152 1152 121 HOH HOH . 
H 6 HOH A 153 1153 179 HOH HOH . 
H 6 HOH A 154 1154 106 HOH HOH . 
H 6 HOH A 155 1155 79 HOH HOH . 
H 6 HOH A 156 1156 134 HOH HOH . 
H 6 HOH A 157 1157 124 HOH HOH . 
H 6 HOH A 158 1158 195 HOH HOH . 
H 6 HOH A 159 1159 115 HOH HOH . 
H 6 HOH A 160 1160 64 HOH HOH . 
H 6 HOH A 161 1161 62 HOH HOH . 
H 6 HOH A 162 1162 157 HOH HOH . 
H 6 HOH A 163 1163 109 HOH HOH . 
H 6 HOH A 164 1164 165 HOH HOH . 
H 6 HOH A 165 1165 170 HOH HOH . 
H 6 HOH A 166 1166 36 HOH HOH . 
H 6 HOH A 167 1167 59 HOH HOH . 
H 6 HOH A 168 1168 149 HOH HOH . 
H 6 HOH A 169 1169 164 HOH HOH . 
H 6 HOH A 170 1170 176 HOH HOH . 
H 6 HOH A 171 1171 69 HOH HOH . 
H 6 HOH A 172 1172 141 HOH HOH . 
H 6 HOH A 173 1173 95 HOH HOH . 
H 6 HOH A 174 1174 137 HOH HOH . 
H 6 HOH A 175 1175 49 HOH HOH . 
H 6 HOH A 176 1176 139 HOH HOH . 
H 6 HOH A 177 1177 197 HOH HOH . 
H 6 HOH A 178 1178 185 HOH HOH . 
H 6 HOH A 179 1179 73 HOH HOH . 
H 6 HOH A 180 1180 138 HOH HOH . 
H 6 HOH A 181 1181 89 HOH HOH . 
H 6 HOH A 182 1182 199 HOH HOH . 
H 6 HOH A 183 1183 167 HOH HOH . 
H 6 HOH A 184 1184 191 HOH HOH . 
H 6 HOH A 185 1185 198 HOH HOH . 
H 6 HOH A 186 1186 113 HOH HOH . 
H 6 HOH A 187 1187 125 HOH HOH . 
H 6 HOH A 188 1188 203 HOH HOH . 
H 6 HOH A 189 1189 184 HOH HOH . 
H 6 HOH A 190 1190 118 HOH HOH . 
H 6 HOH A 191 1191 146 HOH HOH . 
H 6 HOH A 192 1192 126 HOH HOH . 
H 6 HOH A 193 1193 168 HOH HOH . 
H 6 HOH A 194 1194 180 HOH HOH . 
H 6 HOH A 195 1195 161 HOH HOH . 
H 6 HOH A 196 1196 186 HOH HOH . 
H 6 HOH A 197 1197 105 HOH HOH . 
H 6 HOH A 198 1198 200 HOH HOH . 
H 6 HOH A 199 1199 171 HOH HOH . 
H 6 HOH A 200 1200 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 100.354 104.017 97.572 1 34.01 ? C1 GOL 906 A 1 
HETATM 2 O O1 GOL . . . G 5 101.218 103.909 96.43 1 38.69 ? O1 GOL 906 A 1 
HETATM 3 C C2 GOL . . . G 5 100.509 105.416 98.125 1 32.32 ? C2 GOL 906 A 1 
HETATM 4 O O2 GOL . . . G 5 99.699 105.647 99.307 1 28.95 ? O2 GOL 906 A 1 
HETATM 5 C C3 GOL . . . G 5 102.017 105.528 98.39 1 33.33 ? C3 GOL 906 A 1 
HETATM 6 O O3 GOL . . . G 5 102.329 106.119 99.655 1 36.36 ? O3 GOL 906 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#