data_6XK7 # _model_server_result.job_id d7svUfXMCwdRi39xavJaWQ _model_server_result.datetime_utc '2024-11-22 12:02:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":904}' # _entry.id 6XK7 # _exptl.entry_id 6XK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XK7 _cell.length_a 80.887 _cell.length_b 94.82 _cell.length_c 61.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 66 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 66 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 901 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.51 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6XK7 _atom_sites.fract_transf_matrix[1][1] 0.012363 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010546 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 901 901 HEM HEM . C 3 V5G A 1 902 1 V5G PWA . D 4 CL A 1 903 1 CL CL . E 5 GOL A 1 904 1 GOL GOL . F 5 GOL A 1 905 2 GOL GOL . G 5 GOL A 1 906 3 GOL GOL . H 6 POL A 1 907 1 POL POL . I 7 HOH A 1 1001 71 HOH HOH . I 7 HOH A 2 1002 110 HOH HOH . I 7 HOH A 3 1003 88 HOH HOH . I 7 HOH A 4 1004 14 HOH HOH . I 7 HOH A 5 1005 46 HOH HOH . I 7 HOH A 6 1006 84 HOH HOH . I 7 HOH A 7 1007 47 HOH HOH . I 7 HOH A 8 1008 35 HOH HOH . I 7 HOH A 9 1009 52 HOH HOH . I 7 HOH A 10 1010 28 HOH HOH . I 7 HOH A 11 1011 8 HOH HOH . I 7 HOH A 12 1012 38 HOH HOH . I 7 HOH A 13 1013 112 HOH HOH . I 7 HOH A 14 1014 55 HOH HOH . I 7 HOH A 15 1015 81 HOH HOH . I 7 HOH A 16 1016 57 HOH HOH . I 7 HOH A 17 1017 1 HOH HOH . I 7 HOH A 18 1018 6 HOH HOH . I 7 HOH A 19 1019 11 HOH HOH . I 7 HOH A 20 1020 83 HOH HOH . I 7 HOH A 21 1021 107 HOH HOH . I 7 HOH A 22 1022 93 HOH HOH . I 7 HOH A 23 1023 13 HOH HOH . I 7 HOH A 24 1024 102 HOH HOH . I 7 HOH A 25 1025 61 HOH HOH . I 7 HOH A 26 1026 108 HOH HOH . I 7 HOH A 27 1027 92 HOH HOH . I 7 HOH A 28 1028 79 HOH HOH . I 7 HOH A 29 1029 70 HOH HOH . I 7 HOH A 30 1030 50 HOH HOH . I 7 HOH A 31 1031 96 HOH HOH . I 7 HOH A 32 1032 68 HOH HOH . I 7 HOH A 33 1033 72 HOH HOH . I 7 HOH A 34 1034 5 HOH HOH . I 7 HOH A 35 1035 109 HOH HOH . I 7 HOH A 36 1036 104 HOH HOH . I 7 HOH A 37 1037 10 HOH HOH . I 7 HOH A 38 1038 49 HOH HOH . I 7 HOH A 39 1039 2 HOH HOH . I 7 HOH A 40 1040 65 HOH HOH . I 7 HOH A 41 1041 19 HOH HOH . I 7 HOH A 42 1042 34 HOH HOH . I 7 HOH A 43 1043 73 HOH HOH . I 7 HOH A 44 1044 31 HOH HOH . I 7 HOH A 45 1045 100 HOH HOH . I 7 HOH A 46 1046 48 HOH HOH . I 7 HOH A 47 1047 32 HOH HOH . I 7 HOH A 48 1048 82 HOH HOH . I 7 HOH A 49 1049 3 HOH HOH . I 7 HOH A 50 1050 58 HOH HOH . I 7 HOH A 51 1051 26 HOH HOH . I 7 HOH A 52 1052 103 HOH HOH . I 7 HOH A 53 1053 22 HOH HOH . I 7 HOH A 54 1054 18 HOH HOH . I 7 HOH A 55 1055 17 HOH HOH . I 7 HOH A 56 1056 64 HOH HOH . I 7 HOH A 57 1057 24 HOH HOH . I 7 HOH A 58 1058 15 HOH HOH . I 7 HOH A 59 1059 95 HOH HOH . I 7 HOH A 60 1060 97 HOH HOH . I 7 HOH A 61 1061 23 HOH HOH . I 7 HOH A 62 1062 9 HOH HOH . I 7 HOH A 63 1063 78 HOH HOH . I 7 HOH A 64 1064 36 HOH HOH . I 7 HOH A 65 1065 37 HOH HOH . I 7 HOH A 66 1066 53 HOH HOH . I 7 HOH A 67 1067 40 HOH HOH . I 7 HOH A 68 1068 30 HOH HOH . I 7 HOH A 69 1069 29 HOH HOH . I 7 HOH A 70 1070 44 HOH HOH . I 7 HOH A 71 1071 67 HOH HOH . I 7 HOH A 72 1072 77 HOH HOH . I 7 HOH A 73 1073 16 HOH HOH . I 7 HOH A 74 1074 76 HOH HOH . I 7 HOH A 75 1075 4 HOH HOH . I 7 HOH A 76 1076 106 HOH HOH . I 7 HOH A 77 1077 33 HOH HOH . I 7 HOH A 78 1078 7 HOH HOH . I 7 HOH A 79 1079 114 HOH HOH . I 7 HOH A 80 1080 86 HOH HOH . I 7 HOH A 81 1081 66 HOH HOH . I 7 HOH A 82 1082 56 HOH HOH . I 7 HOH A 83 1083 41 HOH HOH . I 7 HOH A 84 1084 75 HOH HOH . I 7 HOH A 85 1085 99 HOH HOH . I 7 HOH A 86 1086 39 HOH HOH . I 7 HOH A 87 1087 98 HOH HOH . I 7 HOH A 88 1088 63 HOH HOH . I 7 HOH A 89 1089 59 HOH HOH . I 7 HOH A 90 1090 42 HOH HOH . I 7 HOH A 91 1091 21 HOH HOH . I 7 HOH A 92 1092 105 HOH HOH . I 7 HOH A 93 1093 74 HOH HOH . I 7 HOH A 94 1094 25 HOH HOH . I 7 HOH A 95 1095 101 HOH HOH . I 7 HOH A 96 1096 80 HOH HOH . I 7 HOH A 97 1097 60 HOH HOH . I 7 HOH A 98 1098 27 HOH HOH . I 7 HOH A 99 1099 111 HOH HOH . I 7 HOH A 100 1100 87 HOH HOH . I 7 HOH A 101 1101 62 HOH HOH . I 7 HOH A 102 1102 43 HOH HOH . I 7 HOH A 103 1103 91 HOH HOH . I 7 HOH A 104 1104 51 HOH HOH . I 7 HOH A 105 1105 113 HOH HOH . I 7 HOH A 106 1106 89 HOH HOH . I 7 HOH A 107 1107 45 HOH HOH . I 7 HOH A 108 1108 94 HOH HOH . I 7 HOH A 109 1109 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -5.268 22.092 33.401 1 44.62 ? C1 GOL 904 A 1 HETATM 2 O O1 GOL . . . E 5 -4.888 21.288 34.536 1 39.33 ? O1 GOL 904 A 1 HETATM 3 C C2 GOL . . . E 5 -6.341 21.401 32.64 1 46.04 ? C2 GOL 904 A 1 HETATM 4 O O2 GOL . . . E 5 -6.111 20.007 32.739 1 45.62 ? O2 GOL 904 A 1 HETATM 5 C C3 GOL . . . E 5 -7.528 21.662 33.533 1 47.72 ? C3 GOL 904 A 1 HETATM 6 O O3 GOL . . . E 5 -8.131 22.91 33.225 1 49.3 ? O3 GOL 904 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #