data_6XKA # _model_server_result.job_id ZZHhgZOjrOMVwOBCpT7DCw _model_server_result.datetime_utc '2024-11-22 22:16:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6XKA # _exptl.entry_id 6XKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XKA _cell.length_a 86.31 _cell.length_b 86.31 _cell.length_c 76.834 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 38.417 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 6XKA _atom_sites.fract_transf_matrix[1][1] 0.011586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011586 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 401 1 COA COA . C 3 HOH A 1 501 12 HOH WAT . C 3 HOH A 2 502 7 HOH WAT . C 3 HOH A 3 503 6 HOH WAT . C 3 HOH A 4 504 11 HOH WAT . C 3 HOH A 5 505 23 HOH WAT . C 3 HOH A 6 506 25 HOH WAT . C 3 HOH A 7 507 4 HOH WAT . C 3 HOH A 8 508 17 HOH WAT . C 3 HOH A 9 509 16 HOH WAT . C 3 HOH A 10 510 13 HOH WAT . C 3 HOH A 11 511 5 HOH WAT . C 3 HOH A 12 512 2 HOH WAT . C 3 HOH A 13 513 1 HOH WAT . C 3 HOH A 14 514 10 HOH WAT . C 3 HOH A 15 515 9 HOH WAT . C 3 HOH A 16 516 22 HOH WAT . C 3 HOH A 17 517 20 HOH WAT . C 3 HOH A 18 518 21 HOH WAT . C 3 HOH A 19 519 15 HOH WAT . C 3 HOH A 20 520 8 HOH WAT . C 3 HOH A 21 521 3 HOH WAT . C 3 HOH A 22 522 19 HOH WAT . C 3 HOH A 23 523 18 HOH WAT . C 3 HOH A 24 524 26 HOH WAT . C 3 HOH A 25 525 24 HOH WAT . C 3 HOH A 26 526 14 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 -25.952 -18.02 21.014 1 87.2 ? N1A COA 401 A 1 HETATM 2 C C2A COA . . . B 2 -26.193 -18.199 22.344 1 87.07 ? C2A COA 401 A 1 HETATM 3 N N3A COA . . . B 2 -25.682 -17.329 23.263 1 87.81 ? N3A COA 401 A 1 HETATM 4 C C4A COA . . . B 2 -24.932 -16.281 22.857 1 88.53 ? C4A COA 401 A 1 HETATM 5 C C5A COA . . . B 2 -24.693 -16.102 21.542 1 89.49 ? C5A COA 401 A 1 HETATM 6 C C6A COA . . . B 2 -25.212 -16.987 20.614 1 86.96 ? C6A COA 401 A 1 HETATM 7 N N6A COA . . . B 2 -25.095 -17.008 19.16 1 86.62 ? N6A COA 401 A 1 HETATM 8 N N7A COA . . . B 2 -23.932 -15.005 21.4 1 88.84 ? N7A COA 401 A 1 HETATM 9 C C8A COA . . . B 2 -23.699 -14.501 22.627 1 88.9 ? C8A COA 401 A 1 HETATM 10 N N9A COA . . . B 2 -24.313 -15.282 23.527 1 89.47 ? N9A COA 401 A 1 HETATM 11 C C1B COA . . . B 2 -24.293 -15.071 24.943 1 94.46 ? C1B COA 401 A 1 HETATM 12 C C2B COA . . . B 2 -23.118 -15.371 25.49 1 95.97 ? C2B COA 401 A 1 HETATM 13 O O2B COA . . . B 2 -23.053 -16.788 25.862 1 95.43 ? O2B COA 401 A 1 HETATM 14 C C3B COA . . . B 2 -23.105 -14.484 26.765 1 98.67 ? C3B COA 401 A 1 HETATM 15 O O3B COA . . . B 2 -23.832 -15.075 27.705 1 100.44 ? O3B COA 401 A 1 HETATM 16 P P3B COA . . . B 2 -23.306 -15.103 29.268 1 102.05 ? P3B COA 401 A 1 HETATM 17 O O7A COA . . . B 2 -22.097 -15.989 29.372 1 102.63 ? O7A COA 401 A 1 HETATM 18 O O8A COA . . . B 2 -22.952 -13.698 29.713 1 101.52 ? O8A COA 401 A 1 HETATM 19 O O9A COA . . . B 2 -24.418 -15.658 30.133 1 102.43 ? O9A COA 401 A 1 HETATM 20 C C4B COA . . . B 2 -23.822 -13.15 26.323 1 99.82 ? C4B COA 401 A 1 HETATM 21 O O4B COA . . . B 2 -24.525 -13.463 25.254 1 97.02 ? O4B COA 401 A 1 HETATM 22 C C5B COA . . . B 2 -22.792 -12.064 25.995 1 103.94 ? C5B COA 401 A 1 HETATM 23 O O5B COA . . . B 2 -22.077 -12.41 24.836 1 108.1 ? O5B COA 401 A 1 HETATM 24 P P1A COA . . . B 2 -20.918 -11.379 24.276 1 112.92 ? P1A COA 401 A 1 HETATM 25 O O1A COA . . . B 2 -21.565 -10.037 24.006 1 112.5 ? O1A COA 401 A 1 HETATM 26 O O2A COA . . . B 2 -20.331 -11.93 23.004 1 113.32 ? O2A COA 401 A 1 HETATM 27 O O3A COA . . . B 2 -19.713 -11.211 25.405 1 118.15 ? O3A COA 401 A 1 HETATM 28 P P2A COA . . . B 2 -18.664 -9.925 25.467 1 123.24 ? P2A COA 401 A 1 HETATM 29 O O4A COA . . . B 2 -17.5 -10.149 24.532 1 123.78 ? O4A COA 401 A 1 HETATM 30 O O5A COA . . . B 2 -19.393 -8.663 25.058 1 122.42 ? O5A COA 401 A 1 HETATM 31 O O6A COA . . . B 2 -18.106 -9.783 27.023 1 128.15 ? O6A COA 401 A 1 HETATM 32 C CBP COA . . . B 2 -18.211 -10.091 29.424 1 136.37 ? CBP COA 401 A 1 HETATM 33 C CCP COA . . . B 2 -18.97 -10.052 28.1 1 132.42 ? CCP COA 401 A 1 HETATM 34 C CDP COA . . . B 2 -16.886 -10.861 29.186 1 136.42 ? CDP COA 401 A 1 HETATM 35 C CEP COA . . . B 2 -17.888 -8.627 29.812 1 136.36 ? CEP COA 401 A 1 HETATM 36 C CAP COA . . . B 2 -19.177 -10.772 30.483 1 139.92 ? CAP COA 401 A 1 HETATM 37 O OAP COA . . . B 2 -19.136 -12.116 30.215 1 140.19 ? OAP COA 401 A 1 HETATM 38 C C9P COA . . . B 2 -18.938 -10.601 32.009 1 143 ? C9P COA 401 A 1 HETATM 39 O O9P COA . . . B 2 -18.602 -9.58 32.511 1 143.32 ? O9P COA 401 A 1 HETATM 40 N N8P COA . . . B 2 -19.167 -11.765 32.938 1 145.72 ? N8P COA 401 A 1 HETATM 41 C C7P COA . . . B 2 -18.951 -11.568 34.396 1 148.82 ? C7P COA 401 A 1 HETATM 42 C C6P COA . . . B 2 -17.458 -11.533 34.874 1 152.51 ? C6P COA 401 A 1 HETATM 43 C C5P COA . . . B 2 -17.323 -12.717 35.851 1 155.62 ? C5P COA 401 A 1 HETATM 44 O O5P COA . . . B 2 -18.102 -12.836 36.73 1 155.95 ? O5P COA 401 A 1 HETATM 45 N N4P COA . . . B 2 -16.235 -13.715 35.722 1 158.28 ? N4P COA 401 A 1 HETATM 46 C C3P COA . . . B 2 -15.225 -13.623 34.641 1 159.77 ? C3P COA 401 A 1 HETATM 47 C C2P COA . . . B 2 -14.036 -12.682 34.927 1 160.89 ? C2P COA 401 A 1 HETATM 48 S S1P COA . . . B 2 -13.876 -11.358 33.67 1 161.58 ? S1P COA 401 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #