data_6XKF
#
_model_server_result.job_id            wjL8jLkewpqH4oGqtPBPPA 
_model_server_result.datetime_utc      '2024-11-08 16:01:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xkf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    6XKF 
#
_exptl.entry_id    6XKF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.97 
_cell.angle_gamma         90 
_cell.entry_id            6XKF 
_cell.length_a            44.878 
_cell.length_b            53.791 
_cell.length_c            115.261 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XKF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 144 A SER 144 1_555 A N CSX 145 A CSX 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C CSX 145 A CSX 145 1_555 A N GLY 146 A GLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C SER 144 B SER 144 1_555 B N CSX 145 B CSX 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale4 B C CSX 145 B CSX 145 1_555 B N GLY 146 B GLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 97 n n 
C1 C2 EDO sing 98 n n 
C1 H11 EDO sing 99 n n 
C1 H12 EDO sing 100 n n 
O1 HO1 EDO sing 101 n n 
C2 O2 EDO sing 102 n n 
C2 H21 EDO sing 103 n n 
C2 H22 EDO sing 104 n n 
O2 HO2 EDO sing 105 n n 
#
_atom_sites.entry_id                     6XKF 
_atom_sites.fract_transf_matrix[1][1]    0.022283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004321 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01859 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008838 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 401 402 EDO EDO . 
D 3 CL A 1 402 501 CL CL . 
E 2 EDO B 1 401 401 EDO EDO . 
F 4 HOH A 1 501 130 HOH HOH . 
F 4 HOH A 2 502 50 HOH HOH . 
F 4 HOH A 3 503 105 HOH HOH . 
F 4 HOH A 4 504 58 HOH HOH . 
F 4 HOH A 5 505 54 HOH HOH . 
F 4 HOH A 6 506 88 HOH HOH . 
F 4 HOH A 7 507 100 HOH HOH . 
F 4 HOH A 8 508 74 HOH HOH . 
F 4 HOH A 9 509 110 HOH HOH . 
F 4 HOH A 10 510 119 HOH HOH . 
F 4 HOH A 11 511 108 HOH HOH . 
F 4 HOH A 12 512 65 HOH HOH . 
F 4 HOH A 13 513 27 HOH HOH . 
F 4 HOH A 14 514 113 HOH HOH . 
F 4 HOH A 15 515 71 HOH HOH . 
F 4 HOH A 16 516 6 HOH HOH . 
F 4 HOH A 17 517 67 HOH HOH . 
F 4 HOH A 18 518 91 HOH HOH . 
F 4 HOH A 19 519 45 HOH HOH . 
F 4 HOH A 20 520 60 HOH HOH . 
F 4 HOH A 21 521 51 HOH HOH . 
F 4 HOH A 22 522 49 HOH HOH . 
F 4 HOH A 23 523 15 HOH HOH . 
F 4 HOH A 24 524 115 HOH HOH . 
F 4 HOH A 25 525 116 HOH HOH . 
F 4 HOH A 26 526 135 HOH HOH . 
F 4 HOH A 27 527 3 HOH HOH . 
F 4 HOH A 28 528 62 HOH HOH . 
F 4 HOH A 29 529 57 HOH HOH . 
F 4 HOH A 30 530 17 HOH HOH . 
F 4 HOH A 31 531 69 HOH HOH . 
F 4 HOH A 32 532 39 HOH HOH . 
F 4 HOH A 33 533 20 HOH HOH . 
F 4 HOH A 34 534 4 HOH HOH . 
F 4 HOH A 35 535 37 HOH HOH . 
F 4 HOH A 36 536 134 HOH HOH . 
F 4 HOH A 37 537 85 HOH HOH . 
F 4 HOH A 38 538 98 HOH HOH . 
F 4 HOH A 39 539 38 HOH HOH . 
F 4 HOH A 40 540 111 HOH HOH . 
F 4 HOH A 41 541 132 HOH HOH . 
F 4 HOH A 42 542 21 HOH HOH . 
F 4 HOH A 43 543 48 HOH HOH . 
F 4 HOH A 44 544 19 HOH HOH . 
F 4 HOH A 45 545 42 HOH HOH . 
F 4 HOH A 46 546 82 HOH HOH . 
F 4 HOH A 47 547 89 HOH HOH . 
F 4 HOH A 48 548 101 HOH HOH . 
F 4 HOH A 49 549 63 HOH HOH . 
F 4 HOH A 50 550 43 HOH HOH . 
F 4 HOH A 51 551 18 HOH HOH . 
F 4 HOH A 52 552 25 HOH HOH . 
F 4 HOH A 53 553 61 HOH HOH . 
F 4 HOH A 54 554 12 HOH HOH . 
F 4 HOH A 55 555 10 HOH HOH . 
F 4 HOH A 56 556 56 HOH HOH . 
F 4 HOH A 57 557 9 HOH HOH . 
F 4 HOH A 58 558 68 HOH HOH . 
F 4 HOH A 59 559 52 HOH HOH . 
F 4 HOH A 60 560 136 HOH HOH . 
F 4 HOH A 61 561 122 HOH HOH . 
F 4 HOH A 62 562 35 HOH HOH . 
F 4 HOH A 63 563 121 HOH HOH . 
F 4 HOH A 64 564 97 HOH HOH . 
F 4 HOH A 65 565 55 HOH HOH . 
F 4 HOH A 66 566 129 HOH HOH . 
F 4 HOH A 67 567 102 HOH HOH . 
F 4 HOH A 68 568 47 HOH HOH . 
F 4 HOH A 69 569 34 HOH HOH . 
F 4 HOH A 70 570 41 HOH HOH . 
F 4 HOH A 71 571 96 HOH HOH . 
F 4 HOH A 72 572 36 HOH HOH . 
F 4 HOH A 73 573 73 HOH HOH . 
F 4 HOH A 74 574 75 HOH HOH . 
F 4 HOH A 75 575 86 HOH HOH . 
F 4 HOH A 76 576 5 HOH HOH . 
F 4 HOH A 77 577 138 HOH HOH . 
F 4 HOH A 78 578 79 HOH HOH . 
F 4 HOH A 79 579 77 HOH HOH . 
F 4 HOH A 80 580 93 HOH HOH . 
F 4 HOH A 81 581 53 HOH HOH . 
F 4 HOH A 82 582 78 HOH HOH . 
F 4 HOH A 83 583 64 HOH HOH . 
F 4 HOH A 84 584 24 HOH HOH . 
G 4 HOH B 1 501 124 HOH HOH . 
G 4 HOH B 2 502 94 HOH HOH . 
G 4 HOH B 3 503 66 HOH HOH . 
G 4 HOH B 4 504 103 HOH HOH . 
G 4 HOH B 5 505 76 HOH HOH . 
G 4 HOH B 6 506 32 HOH HOH . 
G 4 HOH B 7 507 81 HOH HOH . 
G 4 HOH B 8 508 7 HOH HOH . 
G 4 HOH B 9 509 11 HOH HOH . 
G 4 HOH B 10 510 22 HOH HOH . 
G 4 HOH B 11 511 84 HOH HOH . 
G 4 HOH B 12 512 128 HOH HOH . 
G 4 HOH B 13 513 118 HOH HOH . 
G 4 HOH B 14 514 13 HOH HOH . 
G 4 HOH B 15 515 72 HOH HOH . 
G 4 HOH B 16 516 107 HOH HOH . 
G 4 HOH B 17 517 104 HOH HOH . 
G 4 HOH B 18 518 29 HOH HOH . 
G 4 HOH B 19 519 33 HOH HOH . 
G 4 HOH B 20 520 114 HOH HOH . 
G 4 HOH B 21 521 23 HOH HOH . 
G 4 HOH B 22 522 70 HOH HOH . 
G 4 HOH B 23 523 112 HOH HOH . 
G 4 HOH B 24 524 83 HOH HOH . 
G 4 HOH B 25 525 8 HOH HOH . 
G 4 HOH B 26 526 125 HOH HOH . 
G 4 HOH B 27 527 92 HOH HOH . 
G 4 HOH B 28 528 117 HOH HOH . 
G 4 HOH B 29 529 59 HOH HOH . 
G 4 HOH B 30 530 90 HOH HOH . 
G 4 HOH B 31 531 133 HOH HOH . 
G 4 HOH B 32 532 80 HOH HOH . 
G 4 HOH B 33 533 137 HOH HOH . 
G 4 HOH B 34 534 26 HOH HOH . 
G 4 HOH B 35 535 131 HOH HOH . 
G 4 HOH B 36 536 2 HOH HOH . 
G 4 HOH B 37 537 30 HOH HOH . 
G 4 HOH B 38 538 40 HOH HOH . 
G 4 HOH B 39 539 99 HOH HOH . 
G 4 HOH B 40 540 28 HOH HOH . 
G 4 HOH B 41 541 106 HOH HOH . 
G 4 HOH B 42 542 46 HOH HOH . 
G 4 HOH B 43 543 109 HOH HOH . 
G 4 HOH B 44 544 14 HOH HOH . 
G 4 HOH B 45 545 120 HOH HOH . 
G 4 HOH B 46 546 44 HOH HOH . 
G 4 HOH B 47 547 95 HOH HOH . 
G 4 HOH B 48 548 1 HOH HOH . 
G 4 HOH B 49 549 87 HOH HOH . 
G 4 HOH B 50 550 16 HOH HOH . 
G 4 HOH B 51 551 123 HOH HOH . 
G 4 HOH B 52 552 126 HOH HOH . 
G 4 HOH B 53 553 127 HOH HOH . 
G 4 HOH B 54 554 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 12.284 -0.01 38.729 1 54.53 ? C1 EDO 401 A 1 
HETATM 2 O O1 EDO . . . C 2 12.972 1.048 39.407 1 53.33 ? O1 EDO 401 A 1 
HETATM 3 C C2 EDO . . . C 2 10.899 -0.166 39.345 1 52.78 ? C2 EDO 401 A 1 
HETATM 4 O O2 EDO . . . C 2 10.094 -0.995 38.498 1 48.52 ? O2 EDO 401 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#