data_6XKH # _model_server_result.job_id 66Rugsol5VOY5wXXIZU4nA _model_server_result.datetime_utc '2024-11-21 08:42:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 6XKH # _exptl.entry_id 6XKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.996 _cell.angle_gamma 90 _cell.entry_id 6XKH _cell.length_a 96.65 _cell.length_b 83.313 _cell.length_c 54.663 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 144 A SER 144 1_555 A N CSD 145 A CSD 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CSD 145 A CSD 145 1_555 A N GLY 146 A GLY 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 113 n n C O2 FMT sing 114 n n C H FMT sing 115 n n O2 HO2 FMT sing 116 n n # _atom_sites.entry_id 6XKH _atom_sites.fract_transf_matrix[1][1] 0.010347 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 401 EDO EDO . C 2 EDO A 1 402 402 EDO EDO . D 3 FMT A 1 403 403 FMT FMT . E 3 FMT A 1 404 404 FMT FMT . F 3 FMT A 1 405 405 FMT FMT . G 3 FMT A 1 406 406 FMT FMT . H 4 ACT A 1 407 407 ACT ACT . I 5 HOH A 1 501 506 HOH HOH . I 5 HOH A 2 502 514 HOH HOH . I 5 HOH A 3 503 502 HOH HOH . I 5 HOH A 4 504 501 HOH HOH . I 5 HOH A 5 505 507 HOH HOH . I 5 HOH A 6 506 532 HOH HOH . I 5 HOH A 7 507 541 HOH HOH . I 5 HOH A 8 508 504 HOH HOH . I 5 HOH A 9 509 511 HOH HOH . I 5 HOH A 10 510 733 HOH HOH . I 5 HOH A 11 511 518 HOH HOH . I 5 HOH A 12 512 527 HOH HOH . I 5 HOH A 13 513 516 HOH HOH . I 5 HOH A 14 514 509 HOH HOH . I 5 HOH A 15 515 521 HOH HOH . I 5 HOH A 16 516 513 HOH HOH . I 5 HOH A 17 517 517 HOH HOH . I 5 HOH A 18 518 503 HOH HOH . I 5 HOH A 19 519 510 HOH HOH . I 5 HOH A 20 520 508 HOH HOH . I 5 HOH A 21 521 538 HOH HOH . I 5 HOH A 22 522 549 HOH HOH . I 5 HOH A 23 523 526 HOH HOH . I 5 HOH A 24 524 551 HOH HOH . I 5 HOH A 25 525 561 HOH HOH . I 5 HOH A 26 526 523 HOH HOH . I 5 HOH A 27 527 540 HOH HOH . I 5 HOH A 28 528 520 HOH HOH . I 5 HOH A 29 529 537 HOH HOH . I 5 HOH A 30 530 545 HOH HOH . I 5 HOH A 31 531 512 HOH HOH . I 5 HOH A 32 532 547 HOH HOH . I 5 HOH A 33 533 535 HOH HOH . I 5 HOH A 34 534 525 HOH HOH . I 5 HOH A 35 535 528 HOH HOH . I 5 HOH A 36 536 522 HOH HOH . I 5 HOH A 37 537 536 HOH HOH . I 5 HOH A 38 538 530 HOH HOH . I 5 HOH A 39 539 544 HOH HOH . I 5 HOH A 40 540 519 HOH HOH . I 5 HOH A 41 541 587 HOH HOH . I 5 HOH A 42 542 543 HOH HOH . I 5 HOH A 43 543 534 HOH HOH . I 5 HOH A 44 544 531 HOH HOH . I 5 HOH A 45 545 548 HOH HOH . I 5 HOH A 46 546 533 HOH HOH . I 5 HOH A 47 547 546 HOH HOH . I 5 HOH A 48 548 515 HOH HOH . I 5 HOH A 49 549 552 HOH HOH . I 5 HOH A 50 550 539 HOH HOH . I 5 HOH A 51 551 572 HOH HOH . I 5 HOH A 52 552 529 HOH HOH . I 5 HOH A 53 553 729 HOH HOH . I 5 HOH A 54 554 555 HOH HOH . I 5 HOH A 55 555 558 HOH HOH . I 5 HOH A 56 556 560 HOH HOH . I 5 HOH A 57 557 505 HOH HOH . I 5 HOH A 58 558 542 HOH HOH . I 5 HOH A 59 559 566 HOH HOH . I 5 HOH A 60 560 580 HOH HOH . I 5 HOH A 61 561 556 HOH HOH . I 5 HOH A 62 562 563 HOH HOH . I 5 HOH A 63 563 550 HOH HOH . I 5 HOH A 64 564 553 HOH HOH . I 5 HOH A 65 565 559 HOH HOH . I 5 HOH A 66 566 577 HOH HOH . I 5 HOH A 67 567 576 HOH HOH . I 5 HOH A 68 568 564 HOH HOH . I 5 HOH A 69 569 569 HOH HOH . I 5 HOH A 70 570 565 HOH HOH . I 5 HOH A 71 571 582 HOH HOH . I 5 HOH A 72 572 578 HOH HOH . I 5 HOH A 73 573 736 HOH HOH . I 5 HOH A 74 574 568 HOH HOH . I 5 HOH A 75 575 575 HOH HOH . I 5 HOH A 76 576 574 HOH HOH . I 5 HOH A 77 577 567 HOH HOH . I 5 HOH A 78 578 570 HOH HOH . I 5 HOH A 79 579 631 HOH HOH . I 5 HOH A 80 580 524 HOH HOH . I 5 HOH A 81 581 571 HOH HOH . I 5 HOH A 82 582 619 HOH HOH . I 5 HOH A 83 583 581 HOH HOH . I 5 HOH A 84 584 579 HOH HOH . I 5 HOH A 85 585 617 HOH HOH . I 5 HOH A 86 586 584 HOH HOH . I 5 HOH A 87 587 573 HOH HOH . I 5 HOH A 88 588 557 HOH HOH . I 5 HOH A 89 589 594 HOH HOH . I 5 HOH A 90 590 586 HOH HOH . I 5 HOH A 91 591 562 HOH HOH . I 5 HOH A 92 592 583 HOH HOH . I 5 HOH A 93 593 554 HOH HOH . I 5 HOH A 94 594 589 HOH HOH . I 5 HOH A 95 595 597 HOH HOH . I 5 HOH A 96 596 595 HOH HOH . I 5 HOH A 97 597 588 HOH HOH . I 5 HOH A 98 598 614 HOH HOH . I 5 HOH A 99 599 585 HOH HOH . I 5 HOH A 100 600 607 HOH HOH . I 5 HOH A 101 601 596 HOH HOH . I 5 HOH A 102 602 590 HOH HOH . I 5 HOH A 103 603 735 HOH HOH . I 5 HOH A 104 604 599 HOH HOH . I 5 HOH A 105 605 600 HOH HOH . I 5 HOH A 106 606 598 HOH HOH . I 5 HOH A 107 607 602 HOH HOH . I 5 HOH A 108 608 634 HOH HOH . I 5 HOH A 109 609 593 HOH HOH . I 5 HOH A 110 610 592 HOH HOH . I 5 HOH A 111 611 606 HOH HOH . I 5 HOH A 112 612 608 HOH HOH . I 5 HOH A 113 613 632 HOH HOH . I 5 HOH A 114 614 664 HOH HOH . I 5 HOH A 115 615 601 HOH HOH . I 5 HOH A 116 616 604 HOH HOH . I 5 HOH A 117 617 603 HOH HOH . I 5 HOH A 118 618 612 HOH HOH . I 5 HOH A 119 619 605 HOH HOH . I 5 HOH A 120 620 616 HOH HOH . I 5 HOH A 121 621 620 HOH HOH . I 5 HOH A 122 622 629 HOH HOH . I 5 HOH A 123 623 624 HOH HOH . I 5 HOH A 124 624 653 HOH HOH . I 5 HOH A 125 625 618 HOH HOH . I 5 HOH A 126 626 622 HOH HOH . I 5 HOH A 127 627 623 HOH HOH . I 5 HOH A 128 628 630 HOH HOH . I 5 HOH A 129 629 640 HOH HOH . I 5 HOH A 130 630 611 HOH HOH . I 5 HOH A 131 631 659 HOH HOH . I 5 HOH A 132 632 609 HOH HOH . I 5 HOH A 133 633 633 HOH HOH . I 5 HOH A 134 634 615 HOH HOH . I 5 HOH A 135 635 621 HOH HOH . I 5 HOH A 136 636 628 HOH HOH . I 5 HOH A 137 637 637 HOH HOH . I 5 HOH A 138 638 626 HOH HOH . I 5 HOH A 139 639 646 HOH HOH . I 5 HOH A 140 640 638 HOH HOH . I 5 HOH A 141 641 654 HOH HOH . I 5 HOH A 142 642 613 HOH HOH . I 5 HOH A 143 643 728 HOH HOH . I 5 HOH A 144 644 636 HOH HOH . I 5 HOH A 145 645 734 HOH HOH . I 5 HOH A 146 646 655 HOH HOH . I 5 HOH A 147 647 610 HOH HOH . I 5 HOH A 148 648 635 HOH HOH . I 5 HOH A 149 649 647 HOH HOH . I 5 HOH A 150 650 650 HOH HOH . I 5 HOH A 151 651 625 HOH HOH . I 5 HOH A 152 652 651 HOH HOH . I 5 HOH A 153 653 641 HOH HOH . I 5 HOH A 154 654 591 HOH HOH . I 5 HOH A 155 655 643 HOH HOH . I 5 HOH A 156 656 627 HOH HOH . I 5 HOH A 157 657 657 HOH HOH . I 5 HOH A 158 658 644 HOH HOH . I 5 HOH A 159 659 639 HOH HOH . I 5 HOH A 160 660 652 HOH HOH . I 5 HOH A 161 661 645 HOH HOH . I 5 HOH A 162 662 658 HOH HOH . I 5 HOH A 163 663 670 HOH HOH . I 5 HOH A 164 664 649 HOH HOH . I 5 HOH A 165 665 648 HOH HOH . I 5 HOH A 166 666 739 HOH HOH . I 5 HOH A 167 667 660 HOH HOH . I 5 HOH A 168 668 662 HOH HOH . I 5 HOH A 169 669 661 HOH HOH . I 5 HOH A 170 670 663 HOH HOH . I 5 HOH A 171 671 665 HOH HOH . I 5 HOH A 172 672 738 HOH HOH . I 5 HOH A 173 673 656 HOH HOH . I 5 HOH A 174 674 667 HOH HOH . I 5 HOH A 175 675 642 HOH HOH . I 5 HOH A 176 676 668 HOH HOH . I 5 HOH A 177 677 669 HOH HOH . I 5 HOH A 178 678 666 HOH HOH . I 5 HOH A 179 679 737 HOH HOH . I 5 HOH A 180 680 672 HOH HOH . I 5 HOH A 181 681 671 HOH HOH . I 5 HOH A 182 682 680 HOH HOH . I 5 HOH A 183 683 674 HOH HOH . I 5 HOH A 184 684 677 HOH HOH . I 5 HOH A 185 685 673 HOH HOH . I 5 HOH A 186 686 679 HOH HOH . I 5 HOH A 187 687 727 HOH HOH . I 5 HOH A 188 688 678 HOH HOH . I 5 HOH A 189 689 730 HOH HOH . I 5 HOH A 190 690 676 HOH HOH . I 5 HOH A 191 691 731 HOH HOH . I 5 HOH A 192 692 682 HOH HOH . I 5 HOH A 193 693 681 HOH HOH . I 5 HOH A 194 694 732 HOH HOH . I 5 HOH A 195 695 675 HOH HOH . I 5 HOH A 196 696 683 HOH HOH . I 5 HOH A 197 697 690 HOH HOH . I 5 HOH A 198 698 686 HOH HOH . I 5 HOH A 199 699 689 HOH HOH . I 5 HOH A 200 700 684 HOH HOH . I 5 HOH A 201 701 685 HOH HOH . I 5 HOH A 202 702 687 HOH HOH . I 5 HOH A 203 703 705 HOH HOH . I 5 HOH A 204 704 688 HOH HOH . I 5 HOH A 205 705 694 HOH HOH . I 5 HOH A 206 706 692 HOH HOH . I 5 HOH A 207 707 693 HOH HOH . I 5 HOH A 208 708 691 HOH HOH . I 5 HOH A 209 709 697 HOH HOH . I 5 HOH A 210 710 703 HOH HOH . I 5 HOH A 211 711 698 HOH HOH . I 5 HOH A 212 712 704 HOH HOH . I 5 HOH A 213 713 695 HOH HOH . I 5 HOH A 214 714 726 HOH HOH . I 5 HOH A 215 715 699 HOH HOH . I 5 HOH A 216 716 701 HOH HOH . I 5 HOH A 217 717 700 HOH HOH . I 5 HOH A 218 718 696 HOH HOH . I 5 HOH A 219 719 702 HOH HOH . I 5 HOH A 220 720 706 HOH HOH . I 5 HOH A 221 721 709 HOH HOH . I 5 HOH A 222 722 711 HOH HOH . I 5 HOH A 223 723 708 HOH HOH . I 5 HOH A 224 724 707 HOH HOH . I 5 HOH A 225 725 712 HOH HOH . I 5 HOH A 226 726 713 HOH HOH . I 5 HOH A 227 727 714 HOH HOH . I 5 HOH A 228 728 716 HOH HOH . I 5 HOH A 229 729 715 HOH HOH . I 5 HOH A 230 730 710 HOH HOH . I 5 HOH A 231 731 719 HOH HOH . I 5 HOH A 232 732 718 HOH HOH . I 5 HOH A 233 733 717 HOH HOH . I 5 HOH A 234 734 720 HOH HOH . I 5 HOH A 235 735 721 HOH HOH . I 5 HOH A 236 736 723 HOH HOH . I 5 HOH A 237 737 722 HOH HOH . I 5 HOH A 238 738 724 HOH HOH . I 5 HOH A 239 739 725 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 3 -6.198 -9.682 23.487 1 47.34 ? C FMT 403 A 1 HETATM 2 O O1 FMT . . . D 3 -5.328 -9.942 22.654 1 43.81 ? O1 FMT 403 A 1 HETATM 3 O O2 FMT . . . D 3 -7.139 -10.441 23.722 1 50.45 ? O2 FMT 403 A 1 HETATM 4 H H FMT . . . D 3 -6.053 -8.855 24.183 1 56.87 ? H FMT 403 A 1 HETATM 5 H HO2 FMT . . . D 3 -7.214 -11.293 23.242 1 60.61 ? HO2 FMT 403 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #