data_6XKQ
#
_model_server_result.job_id            xL4VeFubo6Sr7tD7GmI2QQ 
_model_server_result.datetime_utc      '2024-11-21 08:36:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xkq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    6XKQ 
#
_exptl.entry_id    6XKQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XKQ 
_cell.length_a            67.97 
_cell.length_b            80.07 
_cell.length_c            153.685 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XKQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 C SG CYS 22 L CYS 23 1_555 C SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 C SG CYS 138 L CYS 134 1_555 C SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 B ND2 ASN 28 H ASN 28 1_555 E C1 NAG . H NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6XKQ 
_atom_sites.fract_transf_matrix[1][1]    0.014712 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012489 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG A 1 601 528 NAG NAG . 
E 4 NAG H 1 301 214 NAG NAG . 
F 5 HOH A 1 701 32 HOH HOH . 
F 5 HOH A 2 702 78 HOH HOH . 
F 5 HOH A 3 703 4 HOH HOH . 
F 5 HOH A 4 704 21 HOH HOH . 
F 5 HOH A 5 705 56 HOH HOH . 
F 5 HOH A 6 706 63 HOH HOH . 
F 5 HOH A 7 707 13 HOH HOH . 
F 5 HOH A 8 708 18 HOH HOH . 
F 5 HOH A 9 709 57 HOH HOH . 
F 5 HOH A 10 710 69 HOH HOH . 
F 5 HOH A 11 711 35 HOH HOH . 
F 5 HOH A 12 712 24 HOH HOH . 
F 5 HOH A 13 713 37 HOH HOH . 
F 5 HOH A 14 714 26 HOH HOH . 
F 5 HOH A 15 715 10 HOH HOH . 
F 5 HOH A 16 716 43 HOH HOH . 
F 5 HOH A 17 717 38 HOH HOH . 
F 5 HOH A 18 718 62 HOH HOH . 
F 5 HOH A 19 719 33 HOH HOH . 
F 5 HOH A 20 720 17 HOH HOH . 
F 5 HOH A 21 721 15 HOH HOH . 
F 5 HOH A 22 722 39 HOH HOH . 
G 5 HOH H 1 401 65 HOH HOH . 
G 5 HOH H 2 402 68 HOH HOH . 
G 5 HOH H 3 403 9 HOH HOH . 
G 5 HOH H 4 404 42 HOH HOH . 
G 5 HOH H 5 405 46 HOH HOH . 
G 5 HOH H 6 406 1 HOH HOH . 
G 5 HOH H 7 407 61 HOH HOH . 
G 5 HOH H 8 408 27 HOH HOH . 
G 5 HOH H 9 409 36 HOH HOH . 
G 5 HOH H 10 410 79 HOH HOH . 
G 5 HOH H 11 411 19 HOH HOH . 
G 5 HOH H 12 412 22 HOH HOH . 
G 5 HOH H 13 413 8 HOH HOH . 
G 5 HOH H 14 414 5 HOH HOH . 
G 5 HOH H 15 415 75 HOH HOH . 
G 5 HOH H 16 416 48 HOH HOH . 
G 5 HOH H 17 417 55 HOH HOH . 
G 5 HOH H 18 418 50 HOH HOH . 
G 5 HOH H 19 419 60 HOH HOH . 
G 5 HOH H 20 420 67 HOH HOH . 
G 5 HOH H 21 421 76 HOH HOH . 
H 5 HOH L 1 301 66 HOH HOH . 
H 5 HOH L 2 302 72 HOH HOH . 
H 5 HOH L 3 303 49 HOH HOH . 
H 5 HOH L 4 304 6 HOH HOH . 
H 5 HOH L 5 305 45 HOH HOH . 
H 5 HOH L 6 306 54 HOH HOH . 
H 5 HOH L 7 307 74 HOH HOH . 
H 5 HOH L 8 308 11 HOH HOH . 
H 5 HOH L 9 309 47 HOH HOH . 
H 5 HOH L 10 310 2 HOH HOH . 
H 5 HOH L 11 311 31 HOH HOH . 
H 5 HOH L 12 312 71 HOH HOH . 
H 5 HOH L 13 313 41 HOH HOH . 
H 5 HOH L 14 314 44 HOH HOH . 
H 5 HOH L 15 315 3 HOH HOH . 
H 5 HOH L 16 316 73 HOH HOH . 
H 5 HOH L 17 317 23 HOH HOH . 
H 5 HOH L 18 318 29 HOH HOH . 
H 5 HOH L 19 319 7 HOH HOH . 
H 5 HOH L 20 320 20 HOH HOH . 
H 5 HOH L 21 321 16 HOH HOH . 
H 5 HOH L 22 322 25 HOH HOH . 
H 5 HOH L 23 323 34 HOH HOH . 
H 5 HOH L 24 324 12 HOH HOH . 
H 5 HOH L 25 325 59 HOH HOH . 
H 5 HOH L 26 326 28 HOH HOH . 
H 5 HOH L 27 327 14 HOH HOH . 
H 5 HOH L 28 328 64 HOH HOH . 
H 5 HOH L 29 329 51 HOH HOH . 
H 5 HOH L 30 330 30 HOH HOH . 
H 5 HOH L 31 331 40 HOH HOH . 
H 5 HOH L 32 332 70 HOH HOH . 
H 5 HOH L 33 333 53 HOH HOH . 
H 5 HOH L 34 334 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -55.788 -20.381 -60.292 1 108.22 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . D 4 -55.518 -20.117 -61.774 1 114 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . D 4 -55.473 -18.616 -62.046 1 120.01 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . D 4 -56.743 -17.947 -61.537 1 123.52 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . D 4 -56.962 -18.289 -60.065 1 120.22 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . D 4 -58.269 -17.76 -59.524 1 124.86 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . D 4 -54.183 -21.477 -63.318 1 110.01 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . D 4 -52.834 -22.061 -63.607 1 110.5 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . D 4 -54.281 -20.751 -62.2 1 111.88 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . D 4 -55.337 -18.399 -63.445 1 122.53 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . D 4 -56.653 -16.535 -61.692 1 127.25 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . D 4 -56.995 -19.713 -59.895 1 112.7 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . D 4 -59.089 -18.812 -59.032 1 126.51 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . D 4 -55.141 -21.655 -64.062 1 107.78 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#