data_6XKR # _model_server_result.job_id UODUH9nKvyZ_Bqr2pG7ZIA _model_server_result.datetime_utc '2024-11-22 08:35:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6XKR # _exptl.entry_id 6XKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XKR _cell.length_a 41.453 _cell.length_b 90.622 _cell.length_c 176.322 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 144 H CYS 144 1_555 A SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 140 L CYS 140 1_555 B SG CYS 200 L CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 23 P CYS 54 1_555 C SG CYS 92 P CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6XKR _atom_sites.fract_transf_matrix[1][1] 0.024124 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL H 1 301 2 GOL GOL . E 4 GOL H 1 302 4 GOL GOL . F 4 GOL L 1 301 1 GOL GOL . G 4 GOL L 1 302 3 GOL GOL . H 4 GOL L 1 303 5 GOL GOL . I 5 HOH H 1 401 20 HOH HOH . I 5 HOH H 2 402 149 HOH HOH . I 5 HOH H 3 403 96 HOH HOH . I 5 HOH H 4 404 46 HOH HOH . I 5 HOH H 5 405 164 HOH HOH . I 5 HOH H 6 406 15 HOH HOH . I 5 HOH H 7 407 97 HOH HOH . I 5 HOH H 8 408 72 HOH HOH . I 5 HOH H 9 409 107 HOH HOH . I 5 HOH H 10 410 121 HOH HOH . I 5 HOH H 11 411 88 HOH HOH . I 5 HOH H 12 412 155 HOH HOH . I 5 HOH H 13 413 74 HOH HOH . I 5 HOH H 14 414 38 HOH HOH . I 5 HOH H 15 415 17 HOH HOH . I 5 HOH H 16 416 103 HOH HOH . I 5 HOH H 17 417 110 HOH HOH . I 5 HOH H 18 418 34 HOH HOH . I 5 HOH H 19 419 76 HOH HOH . I 5 HOH H 20 420 52 HOH HOH . I 5 HOH H 21 421 104 HOH HOH . I 5 HOH H 22 422 8 HOH HOH . I 5 HOH H 23 423 73 HOH HOH . I 5 HOH H 24 424 11 HOH HOH . I 5 HOH H 25 425 134 HOH HOH . I 5 HOH H 26 426 130 HOH HOH . I 5 HOH H 27 427 173 HOH HOH . I 5 HOH H 28 428 14 HOH HOH . I 5 HOH H 29 429 102 HOH HOH . I 5 HOH H 30 430 91 HOH HOH . I 5 HOH H 31 431 98 HOH HOH . I 5 HOH H 32 432 111 HOH HOH . I 5 HOH H 33 433 59 HOH HOH . I 5 HOH H 34 434 119 HOH HOH . I 5 HOH H 35 435 3 HOH HOH . I 5 HOH H 36 436 129 HOH HOH . I 5 HOH H 37 437 106 HOH HOH . I 5 HOH H 38 438 39 HOH HOH . I 5 HOH H 39 439 19 HOH HOH . I 5 HOH H 40 440 144 HOH HOH . I 5 HOH H 41 441 177 HOH HOH . I 5 HOH H 42 442 112 HOH HOH . I 5 HOH H 43 443 81 HOH HOH . I 5 HOH H 44 444 163 HOH HOH . I 5 HOH H 45 445 56 HOH HOH . I 5 HOH H 46 446 30 HOH HOH . I 5 HOH H 47 447 133 HOH HOH . I 5 HOH H 48 448 28 HOH HOH . I 5 HOH H 49 449 162 HOH HOH . I 5 HOH H 50 450 180 HOH HOH . I 5 HOH H 51 451 170 HOH HOH . I 5 HOH H 52 452 44 HOH HOH . J 5 HOH L 1 401 136 HOH HOH . J 5 HOH L 2 402 115 HOH HOH . J 5 HOH L 3 403 31 HOH HOH . J 5 HOH L 4 404 124 HOH HOH . J 5 HOH L 5 405 36 HOH HOH . J 5 HOH L 6 406 10 HOH HOH . J 5 HOH L 7 407 165 HOH HOH . J 5 HOH L 8 408 7 HOH HOH . J 5 HOH L 9 409 25 HOH HOH . J 5 HOH L 10 410 123 HOH HOH . J 5 HOH L 11 411 148 HOH HOH . J 5 HOH L 12 412 152 HOH HOH . J 5 HOH L 13 413 6 HOH HOH . J 5 HOH L 14 414 87 HOH HOH . J 5 HOH L 15 415 21 HOH HOH . J 5 HOH L 16 416 154 HOH HOH . J 5 HOH L 17 417 49 HOH HOH . J 5 HOH L 18 418 61 HOH HOH . J 5 HOH L 19 419 12 HOH HOH . J 5 HOH L 20 420 1 HOH HOH . J 5 HOH L 21 421 127 HOH HOH . J 5 HOH L 22 422 5 HOH HOH . J 5 HOH L 23 423 29 HOH HOH . J 5 HOH L 24 424 57 HOH HOH . J 5 HOH L 25 425 131 HOH HOH . J 5 HOH L 26 426 78 HOH HOH . J 5 HOH L 27 427 22 HOH HOH . J 5 HOH L 28 428 122 HOH HOH . J 5 HOH L 29 429 150 HOH HOH . J 5 HOH L 30 430 171 HOH HOH . J 5 HOH L 31 431 105 HOH HOH . J 5 HOH L 32 432 140 HOH HOH . J 5 HOH L 33 433 176 HOH HOH . J 5 HOH L 34 434 153 HOH HOH . J 5 HOH L 35 435 89 HOH HOH . J 5 HOH L 36 436 179 HOH HOH . J 5 HOH L 37 437 166 HOH HOH . J 5 HOH L 38 438 138 HOH HOH . J 5 HOH L 39 439 178 HOH HOH . J 5 HOH L 40 440 51 HOH HOH . J 5 HOH L 41 441 175 HOH HOH . J 5 HOH L 42 442 174 HOH HOH . J 5 HOH L 43 443 156 HOH HOH . K 5 HOH P 1 201 62 HOH HOH . K 5 HOH P 2 202 167 HOH HOH . K 5 HOH P 3 203 172 HOH HOH . K 5 HOH P 4 204 169 HOH HOH . K 5 HOH P 5 205 70 HOH HOH . K 5 HOH P 6 206 43 HOH HOH . K 5 HOH P 7 207 99 HOH HOH . K 5 HOH P 8 208 60 HOH HOH . K 5 HOH P 9 209 18 HOH HOH . K 5 HOH P 10 210 35 HOH HOH . K 5 HOH P 11 211 53 HOH HOH . K 5 HOH P 12 212 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 11.988 91.105 30.535 1 62.1 ? C1 GOL 301 H 1 HETATM 2 O O1 GOL . . . D 4 11.333 90.226 31.422 1 59.91 ? O1 GOL 301 H 1 HETATM 3 C C2 GOL . . . D 4 13.421 91.325 31.003 1 64.17 ? C2 GOL 301 H 1 HETATM 4 O O2 GOL . . . D 4 13.902 90.154 31.624 1 64.59 ? O2 GOL 301 H 1 HETATM 5 C C3 GOL . . . D 4 14.304 91.664 29.809 1 65.28 ? C3 GOL 301 H 1 HETATM 6 O O3 GOL . . . D 4 13.989 92.959 29.349 1 65.28 ? O3 GOL 301 H 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #