data_6XKT # _model_server_result.job_id CCTMFKkM4npxsT--DAbZdg _model_server_result.datetime_utc '2024-10-15 11:27:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xkt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6XKT # _exptl.entry_id 6XKT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XKT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 138 E CYS 138 1_555 E SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 138 R CYS 138 1_555 F SG CYS 155 R CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B SG CYS 55 D CYS 34 1_555 I CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? covale ? covale2 B SG CYS 58 D CYS 37 1_555 I CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale3 D SG CYS 55 Q CYS 34 1_555 L CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale4 D SG CYS 58 Q CYS 37 1_555 L CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc1 A NE2 HIS 97 C HIS 97 1_555 G FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc2 A NE2 HIS 111 C HIS 111 1_555 H FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 A NE2 HIS 198 C HIS 198 1_555 G FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc4 A NE2 HIS 212 C HIS 212 1_555 H FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 B NE2 HIS 59 D HIS 38 1_555 I FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc6 B SD MET 204 D MET 183 1_555 I FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc7 C NE2 HIS 97 P HIS 97 1_555 J FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc8 C NE2 HIS 111 P HIS 111 1_555 K FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc9 C NE2 HIS 198 P HIS 198 1_555 J FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc10 C NE2 HIS 212 P HIS 212 1_555 K FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc11 D NE2 HIS 59 Q HIS 38 1_555 L FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc12 D SD MET 204 Q MET 183 1_555 L FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc13 E SG CYS 133 E CYS 133 1_555 M FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc14 E ND1 HIS 135 E HIS 135 1_555 M FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc15 E SG CYS 153 E CYS 153 1_555 M FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc16 E ND1 HIS 156 E HIS 156 1_555 M FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc17 F SG CYS 133 R CYS 133 1_555 N FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc18 F ND1 HIS 135 R HIS 135 1_555 N FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc19 F SG CYS 153 R CYS 153 1_555 N FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc20 F ND1 HIS 156 R HIS 156 1_555 N FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XKT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HEC C 1 501 501 HEC HEM . H 4 HEC C 1 502 502 HEC HEM . I 4 HEC D 1 501 501 HEC HEC . J 4 HEC P 1 501 501 HEC HEM . K 4 HEC P 1 502 502 HEC HEM . L 4 HEC Q 1 501 501 HEC HEC . M 5 FES E 1 501 501 FES FES . N 5 FES R 1 501 501 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . I 4 137.947 155.605 133.081 1 43.38 ? FE HEC 501 D 1 HETATM 2 C CHA HEC . . . I 4 137.188 158.332 135.049 1 48.8 ? CHA HEC 501 D 1 HETATM 3 C CHB HEC . . . I 4 136.996 153.524 135.645 1 48.31 ? CHB HEC 501 D 1 HETATM 4 C CHC HEC . . . I 4 138.298 152.912 131.012 1 48.97 ? CHC HEC 501 D 1 HETATM 5 C CHD HEC . . . I 4 138.865 157.698 130.502 1 47.75 ? CHD HEC 501 D 1 HETATM 6 N NA HEC . . . I 4 137.162 155.875 134.958 1 48.48 ? NA HEC 501 D 1 HETATM 7 C C1A HEC . . . I 4 137.063 157.085 135.616 1 48.54 ? C1A HEC 501 D 1 HETATM 8 C C2A HEC . . . I 4 136.803 156.826 137.013 1 47.93 ? C2A HEC 501 D 1 HETATM 9 C C3A HEC . . . I 4 136.746 155.499 137.18 1 48.12 ? C3A HEC 501 D 1 HETATM 10 C C4A HEC . . . I 4 136.972 154.878 135.893 1 48.41 ? C4A HEC 501 D 1 HETATM 11 C CMA HEC . . . I 4 136.494 154.723 138.489 1 48.4 ? CMA HEC 501 D 1 HETATM 12 C CAA HEC . . . I 4 136.632 157.925 138.084 1 48.42 ? CAA HEC 501 D 1 HETATM 13 C CBA HEC . . . I 4 135.175 158.349 138.195 1 48.39 ? CBA HEC 501 D 1 HETATM 14 C CGA HEC . . . I 4 135.053 159.402 139.263 1 47.91 ? CGA HEC 501 D 1 HETATM 15 O O1A HEC . . . I 4 135.901 160.332 139.294 1 47.7 ? O1A HEC 501 D 1 HETATM 16 O O2A HEC . . . I 4 134.102 159.317 140.079 1 47.85 ? O2A HEC 501 D 1 HETATM 17 N NB HEC . . . I 4 137.637 153.596 133.278 1 47.19 ? NB HEC 501 D 1 HETATM 18 C C1B HEC . . . I 4 137.354 152.932 134.456 1 47.73 ? C1B HEC 501 D 1 HETATM 19 C C2B HEC . . . I 4 137.497 151.511 134.217 1 48.26 ? C2B HEC 501 D 1 HETATM 20 C C3B HEC . . . I 4 137.853 151.339 132.938 1 48.35 ? C3B HEC 501 D 1 HETATM 21 C C4B HEC . . . I 4 137.95 152.651 132.323 1 48.22 ? C4B HEC 501 D 1 HETATM 22 C CMB HEC . . . I 4 137.289 150.39 135.261 1 48.15 ? CMB HEC 501 D 1 HETATM 23 C CAB HEC . . . I 4 138.126 149.989 132.234 1 43.38 ? CAB HEC 501 D 1 HETATM 24 C CBB HEC . . . I 4 136.91 149.038 132.311 1 48.18 ? CBB HEC 501 D 1 HETATM 25 N NC HEC . . . I 4 138.507 155.354 131.128 1 48.42 ? NC HEC 501 D 1 HETATM 26 C C1C HEC . . . I 4 138.541 154.151 130.452 1 48.81 ? C1C HEC 501 D 1 HETATM 27 C C2C HEC . . . I 4 138.988 154.405 129.095 1 48.11 ? C2C HEC 501 D 1 HETATM 28 C C3C HEC . . . I 4 138.993 155.742 128.918 1 48.17 ? C3C HEC 501 D 1 HETATM 29 C C4C HEC . . . I 4 138.793 156.351 130.22 1 48.05 ? C4C HEC 501 D 1 HETATM 30 C CMC HEC . . . I 4 138.99 153.311 127.998 1 48.24 ? CMC HEC 501 D 1 HETATM 31 C CAC HEC . . . I 4 139.381 156.572 127.666 1 43.38 ? CAC HEC 501 D 1 HETATM 32 C CBC HEC . . . I 4 138.811 156.038 126.334 1 48.09 ? CBC HEC 501 D 1 HETATM 33 N ND HEC . . . I 4 138.022 157.689 132.816 1 47.98 ? ND HEC 501 D 1 HETATM 34 C C1D HEC . . . I 4 138.425 158.322 131.645 1 47.89 ? C1D HEC 501 D 1 HETATM 35 C C2D HEC . . . I 4 138.309 159.751 131.82 1 48.04 ? C2D HEC 501 D 1 HETATM 36 C C3D HEC . . . I 4 137.784 159.947 133.243 1 47.88 ? C3D HEC 501 D 1 HETATM 37 C C4D HEC . . . I 4 137.636 158.615 133.781 1 48.06 ? C4D HEC 501 D 1 HETATM 38 C CMD HEC . . . I 4 138.64 160.856 130.798 1 48.44 ? CMD HEC 501 D 1 HETATM 39 C CAD HEC . . . I 4 137.468 161.278 133.957 1 48.1 ? CAD HEC 501 D 1 HETATM 40 C CBD HEC . . . I 4 135.954 161.464 133.942 1 48.27 ? CBD HEC 501 D 1 HETATM 41 C CGD HEC . . . I 4 135.577 162.822 134.472 1 47.87 ? CGD HEC 501 D 1 HETATM 42 O O1D HEC . . . I 4 136.426 163.464 135.142 1 48.04 ? O1D HEC 501 D 1 HETATM 43 O O2D HEC . . . I 4 134.423 163.259 134.224 1 48 ? O2D HEC 501 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #