data_6XKU
#
_model_server_result.job_id            h-Vo75dwPy4OPdWEqlPaPg 
_model_server_result.datetime_utc      '2024-11-04 22:36:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xku 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":502}' 
#
_entry.id    6XKU 
#
_exptl.entry_id    6XKU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XKU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XKU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 138 E CYS 138 1_555 A SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 138 R CYS 138 1_555 B SG CYS 155 R CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 D SG CYS 55 D CYS 34 1_555 K CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
covale ? covale2 D SG CYS 58 D CYS 37 1_555 K CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
covale ? covale3 F SG CYS 55 Q CYS 34 1_555 N CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? 
covale ? covale4 F SG CYS 58 Q CYS 37 1_555 N CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
metalc ? metalc1 A SG CYS 133 E CYS 133 1_555 G FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc2 A ND1 HIS 135 E HIS 135 1_555 G FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc3 A SG CYS 153 E CYS 153 1_555 G FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc4 A ND1 HIS 156 E HIS 156 1_555 G FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc5 B SG CYS 133 R CYS 133 1_555 H FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc6 B ND1 HIS 135 R HIS 135 1_555 H FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc7 B SG CYS 153 R CYS 153 1_555 H FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc8 B ND1 HIS 156 R HIS 156 1_555 H FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc9 C NE2 HIS 97 C HIS 97 1_555 I FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc10 C NE2 HIS 111 C HIS 111 1_555 J FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc11 C NE2 HIS 198 C HIS 198 1_555 I FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc12 C NE2 HIS 212 C HIS 212 1_555 J FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc13 D NE2 HIS 59 D HIS 38 1_555 K FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc14 D SD MET 204 D MET 183 1_555 K FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc15 E NE2 HIS 97 P HIS 97 1_555 L FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc16 E NE2 HIS 111 P HIS 111 1_555 M FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc17 E NE2 HIS 198 P HIS 198 1_555 L FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc18 E NE2 HIS 212 P HIS 212 1_555 M FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc19 F NE2 HIS 59 Q HIS 38 1_555 N FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc20 F SD MET 204 Q MET 183 1_555 N FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6XKU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 FES E 1 501 501 FES FES . 
H 4 FES R 1 501 501 FES FES . 
I 5 HEC C 1 501 501 HEC HEM . 
J 5 HEC C 1 502 502 HEC HEM . 
K 5 HEC D 1 501 501 HEC HEC . 
L 5 HEC P 1 501 501 HEC HEM . 
M 5 HEC P 1 502 502 HEC HEM . 
N 5 HEC Q 1 501 501 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . M 5 180.591 162.971 183.286 1 49.13 ? FE HEC 502 P 1 
HETATM 2 C CHA HEC . . . M 5 181.364 164.073 186.359 1 54.45 ? CHA HEC 502 P 1 
HETATM 3 C CHB HEC . . . M 5 178.57 165.741 182.764 1 53.51 ? CHB HEC 502 P 1 
HETATM 4 C CHC HEC . . . M 5 180.099 162.126 179.918 1 53.88 ? CHC HEC 502 P 1 
HETATM 5 C CHD HEC . . . M 5 182.206 160.045 183.762 1 54.79 ? CHD HEC 502 P 1 
HETATM 6 N NA HEC . . . M 5 180.047 164.606 184.366 1 54.13 ? NA HEC 502 P 1 
HETATM 7 C C1A HEC . . . M 5 180.531 164.895 185.628 1 54.77 ? C1A HEC 502 P 1 
HETATM 8 C C2A HEC . . . M 5 180.021 166.199 186.02 1 54.02 ? C2A HEC 502 P 1 
HETATM 9 C C3A HEC . . . M 5 179.244 166.648 185.02 1 54.24 ? C3A HEC 502 P 1 
HETATM 10 C C4A HEC . . . M 5 179.245 165.656 183.961 1 53.62 ? C4A HEC 502 P 1 
HETATM 11 C CMA HEC . . . M 5 178.484 167.994 184.979 1 54.37 ? CMA HEC 502 P 1 
HETATM 12 C CAA HEC . . . M 5 180.313 166.927 187.36 1 53.47 ? CAA HEC 502 P 1 
HETATM 13 C CBA HEC . . . M 5 181.806 167.146 187.601 1 54.6 ? CBA HEC 502 P 1 
HETATM 14 C CGA HEC . . . M 5 182.539 167.434 186.321 1 54.45 ? CGA HEC 502 P 1 
HETATM 15 O O1A HEC . . . M 5 182.172 168.419 185.631 1 54.42 ? O1A HEC 502 P 1 
HETATM 16 O O2A HEC . . . M 5 183.5 166.689 186.003 1 54.26 ? O2A HEC 502 P 1 
HETATM 17 N NB HEC . . . M 5 179.558 163.807 181.625 1 54.3 ? NB HEC 502 P 1 
HETATM 18 C C1B HEC . . . M 5 178.717 164.903 181.677 1 54.36 ? C1B HEC 502 P 1 
HETATM 19 C C2B HEC . . . M 5 178.02 165.013 180.404 1 53.69 ? C2B HEC 502 P 1 
HETATM 20 C C3B HEC . . . M 5 178.444 164.005 179.614 1 52.92 ? C3B HEC 502 P 1 
HETATM 21 C C4B HEC . . . M 5 179.416 163.238 180.372 1 53.57 ? C4B HEC 502 P 1 
HETATM 22 C CMB HEC . . . M 5 176.978 166.118 180.083 1 53.12 ? CMB HEC 502 P 1 
HETATM 23 C CAB HEC . . . M 5 178.05 163.633 178.157 1 53.69 ? CAB HEC 502 P 1 
HETATM 24 C CBB HEC . . . M 5 177.285 164.386 177.355 1 52.92 ? CBB HEC 502 P 1 
HETATM 25 N NC HEC . . . M 5 181.03 161.353 182.055 1 53.5 ? NC HEC 502 P 1 
HETATM 26 C C1C HEC . . . M 5 180.829 161.245 180.693 1 54.17 ? C1C HEC 502 P 1 
HETATM 27 C C2C HEC . . . M 5 181.544 160.075 180.222 1 54.48 ? C2C HEC 502 P 1 
HETATM 28 C C3C HEC . . . M 5 182.14 159.498 181.285 1 54.33 ? C3C HEC 502 P 1 
HETATM 29 C C4C HEC . . . M 5 181.808 160.29 182.459 1 54.25 ? C4C HEC 502 P 1 
HETATM 30 C CMC HEC . . . M 5 181.576 159.653 178.73 1 54.16 ? CMC HEC 502 P 1 
HETATM 31 C CAC HEC . . . M 5 183.012 158.219 181.371 1 54.77 ? CAC HEC 502 P 1 
HETATM 32 C CBC HEC . . . M 5 183.053 157.278 180.418 1 54.41 ? CBC HEC 502 P 1 
HETATM 33 N ND HEC . . . M 5 181.566 162.186 184.785 1 54.38 ? ND HEC 502 P 1 
HETATM 34 C C1D HEC . . . M 5 182.213 160.965 184.792 1 54.81 ? C1D HEC 502 P 1 
HETATM 35 C C2D HEC . . . M 5 182.884 160.835 186.068 1 54.72 ? C2D HEC 502 P 1 
HETATM 36 C C3D HEC . . . M 5 182.645 161.95 186.777 1 54.44 ? C3D HEC 502 P 1 
HETATM 37 C C4D HEC . . . M 5 181.818 162.825 185.981 1 54.3 ? C4D HEC 502 P 1 
HETATM 38 C CMD HEC . . . M 5 183.717 159.605 186.49 1 55.22 ? CMD HEC 502 P 1 
HETATM 39 C CAD HEC . . . M 5 183.133 162.31 188.193 1 54.99 ? CAD HEC 502 P 1 
HETATM 40 C CBD HEC . . . M 5 181.955 162.219 189.159 1 55.19 ? CBD HEC 502 P 1 
HETATM 41 C CGD HEC . . . M 5 182.399 162.594 190.547 1 55.12 ? CGD HEC 502 P 1 
HETATM 42 O O1D HEC . . . M 5 183.481 163.223 190.692 1 54.69 ? O1D HEC 502 P 1 
HETATM 43 O O2D HEC . . . M 5 181.655 162.261 191.505 1 55.16 ? O2D HEC 502 P 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#