data_6XKV
#
_model_server_result.job_id            jQOm_RkIzLsPiQcbY06UAQ 
_model_server_result.datetime_utc      '2024-11-04 22:34:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xkv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    6XKV 
#
_exptl.entry_id    6XKV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XKV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XKV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 138 E CYS 138 1_555 E SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 F SG CYS 138 R CYS 138 1_555 F SG CYS 155 R CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 B SG CYS 55 D CYS 34 1_555 I CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
covale ? covale2 B SG CYS 58 D CYS 37 1_555 I CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
covale ? covale3 D SG CYS 55 Q CYS 34 1_555 L CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
covale ? covale4 D SG CYS 58 Q CYS 37 1_555 L CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? 
metalc ? metalc1 A NE2 HIS 97 C HIS 97 1_555 G FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc2 A NE2 HIS 111 C HIS 111 1_555 H FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc3 A NE2 HIS 198 C HIS 198 1_555 G FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc4 A NE2 HIS 212 C HIS 212 1_555 H FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc5 B NE2 HIS 59 D HIS 38 1_555 I FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc6 B SD MET 204 D MET 183 1_555 I FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc7 C NE2 HIS 97 P HIS 97 1_555 J FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc8 C NE2 HIS 111 P HIS 111 1_555 K FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc9 C NE2 HIS 198 P HIS 198 1_555 J FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc10 C NE2 HIS 212 P HIS 212 1_555 K FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc11 D NE2 HIS 59 Q HIS 38 1_555 L FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc12 D SD MET 204 Q MET 183 1_555 L FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc13 E SG CYS 133 E CYS 133 1_555 M FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc14 E ND1 HIS 135 E HIS 135 1_555 M FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc15 E SG CYS 153 E CYS 153 1_555 M FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc16 E ND1 HIS 156 E HIS 156 1_555 M FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc17 F SG CYS 133 R CYS 133 1_555 N FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc18 F ND1 HIS 135 R HIS 135 1_555 N FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? 
metalc ? metalc19 F SG CYS 153 R CYS 153 1_555 N FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc20 F ND1 HIS 156 R HIS 156 1_555 N FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6XKV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 HEC C 1 501 501 HEC HEM . 
H 4 HEC C 1 502 502 HEC HEM . 
I 4 HEC D 1 501 501 HEC HEC . 
J 4 HEC P 1 501 501 HEC HEM . 
K 4 HEC P 1 502 502 HEC HEM . 
L 4 HEC Q 1 501 501 HEC HEC . 
M 5 FES E 1 501 501 FES FES . 
N 5 FES R 1 501 501 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . H 4 145.894 163.588 183.014 1 49.13 ? FE HEC 502 C 1 
HETATM 2 C CHA HEC . . . H 4 145.125 162.506 186.095 1 54.45 ? CHA HEC 502 C 1 
HETATM 3 C CHB HEC . . . H 4 147.882 160.792 182.493 1 53.51 ? CHB HEC 502 C 1 
HETATM 4 C CHC HEC . . . H 4 146.38 164.415 179.639 1 53.88 ? CHC HEC 502 C 1 
HETATM 5 C CHD HEC . . . H 4 144.316 166.534 183.486 1 54.79 ? CHD HEC 502 C 1 
HETATM 6 N NA HEC . . . H 4 146.425 161.95 184.097 1 54.13 ? NA HEC 502 C 1 
HETATM 7 C C1A HEC . . . H 4 145.944 161.672 185.362 1 54.77 ? C1A HEC 502 C 1 
HETATM 8 C C2A HEC . . . H 4 146.442 160.364 185.757 1 54.02 ? C2A HEC 502 C 1 
HETATM 9 C C3A HEC . . . H 4 147.209 159.902 184.755 1 54.24 ? C3A HEC 502 C 1 
HETATM 10 C C4A HEC . . . H 4 147.214 160.89 183.692 1 53.62 ? C4A HEC 502 C 1 
HETATM 11 C CMA HEC . . . H 4 147.953 158.548 184.715 1 54.37 ? CMA HEC 502 C 1 
HETATM 12 C CAA HEC . . . H 4 146.148 159.644 187.101 1 53.47 ? CAA HEC 502 C 1 
HETATM 13 C CBA HEC . . . H 4 144.654 159.442 187.35 1 54.6 ? CBA HEC 502 C 1 
HETATM 14 C CGA HEC . . . H 4 143.911 159.158 186.075 1 54.45 ? CGA HEC 502 C 1 
HETATM 15 O O1A HEC . . . H 4 144.264 158.167 185.387 1 54.42 ? O1A HEC 502 C 1 
HETATM 16 O O2A HEC . . . H 4 142.957 159.914 185.759 1 54.26 ? O2A HEC 502 C 1 
HETATM 17 N NB HEC . . . H 4 146.91 162.733 181.351 1 54.3 ? NB HEC 502 C 1 
HETATM 18 C C1B HEC . . . H 4 147.739 161.628 181.402 1 54.36 ? C1B HEC 502 C 1 
HETATM 19 C C2B HEC . . . H 4 148.429 161.506 180.127 1 53.69 ? C2B HEC 502 C 1 
HETATM 20 C C3B HEC . . . H 4 148.013 162.515 179.335 1 52.92 ? C3B HEC 502 C 1 
HETATM 21 C C4B HEC . . . H 4 147.052 163.296 180.094 1 53.57 ? C4B HEC 502 C 1 
HETATM 22 C CMB HEC . . . H 4 149.456 160.388 179.805 1 53.12 ? CMB HEC 502 C 1 
HETATM 23 C CAB HEC . . . H 4 148.403 162.878 177.875 1 53.69 ? CAB HEC 502 C 1 
HETATM 24 C CBB HEC . . . H 4 149.155 162.113 177.072 1 52.92 ? CBB HEC 502 C 1 
HETATM 25 N NC HEC . . . H 4 145.468 165.205 181.779 1 53.5 ? NC HEC 502 C 1 
HETATM 26 C C1C HEC . . . H 4 145.664 165.306 180.414 1 54.17 ? C1C HEC 502 C 1 
HETATM 27 C C2C HEC . . . H 4 144.959 166.483 179.942 1 54.48 ? C2C HEC 502 C 1 
HETATM 28 C C3C HEC . . . H 4 144.375 167.07 181.006 1 54.33 ? C3C HEC 502 C 1 
HETATM 29 C C4C HEC . . . H 4 144.704 166.28 182.182 1 54.25 ? C4C HEC 502 C 1 
HETATM 30 C CMC HEC . . . H 4 144.926 166.899 178.45 1 54.16 ? CMC HEC 502 C 1 
HETATM 31 C CAC HEC . . . H 4 143.519 168.36 181.091 1 54.77 ? CAC HEC 502 C 1 
HETATM 32 C CBC HEC . . . H 4 143.483 169.297 180.135 1 54.41 ? CBC HEC 502 C 1 
HETATM 33 N ND HEC . . . H 4 144.936 164.389 184.514 1 54.38 ? ND HEC 502 C 1 
HETATM 34 C C1D HEC . . . H 4 144.304 165.617 184.519 1 54.81 ? C1D HEC 502 C 1 
HETATM 35 C C2D HEC . . . H 4 143.64 165.76 185.798 1 54.72 ? C2D HEC 502 C 1 
HETATM 36 C C3D HEC . . . H 4 143.87 164.645 186.51 1 54.44 ? C3D HEC 502 C 1 
HETATM 37 C C4D HEC . . . H 4 144.683 163.758 185.714 1 54.3 ? C4D HEC 502 C 1 
HETATM 38 C CMD HEC . . . H 4 142.823 167.001 186.22 1 55.22 ? CMD HEC 502 C 1 
HETATM 39 C CAD HEC . . . H 4 143.384 164.297 187.93 1 54.99 ? CAD HEC 502 C 1 
HETATM 40 C CBD HEC . . . H 4 144.567 164.377 188.89 1 55.19 ? CBD HEC 502 C 1 
HETATM 41 C CGD HEC . . . H 4 144.126 164.013 190.282 1 55.12 ? CGD HEC 502 C 1 
HETATM 42 O O1D HEC . . . H 4 143.039 163.397 190.435 1 54.69 ? O1D HEC 502 C 1 
HETATM 43 O O2D HEC . . . H 4 144.879 164.341 191.234 1 55.16 ? O2D HEC 502 C 1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#