data_6XKZ
#
_model_server_result.job_id            dLd5pxcbCwwmnGaNMlKwCg 
_model_server_result.datetime_utc      '2024-11-04 22:32:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xkz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":501}' 
#
_entry.id    6XKZ 
#
_exptl.entry_id    6XKZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              175.82 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE2/S2 (INORGANIC) CLUSTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6XKZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XKZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 138 E CYS 138 1_555 A SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 F SG CYS 138 R CYS 138 1_555 F SG CYS 155 R CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 C SG CYS 55 D CYS 34 1_555 M CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? 
covale ? covale2 C SG CYS 58 D CYS 37 1_555 M CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
covale ? covale3 E SG CYS 55 Q CYS 34 1_555 P CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? 
covale ? covale4 E SG CYS 58 Q CYS 37 1_555 P CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
covale ? covale5 H SG CYS 68 o CYS 68 1_555 U CAB HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.633 ? 
covale ? covale6 H SG CYS 71 o CYS 71 1_555 U CAC HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? 
covale ? covale7 I SG CYS 121 p CYS 121 1_555 W CAB HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale8 I SG CYS 124 p CYS 124 1_555 W CAC HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? 
covale ? covale9 I SG CYS 219 p CYS 219 1_555 V CAB HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? 
covale ? covale10 I SG CYS 222 p CYS 222 1_555 V CAC HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? 
metalc ? metalc1 A SG CYS 133 E CYS 133 1_555 J FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc2 A ND1 HIS 135 E HIS 135 1_555 J FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc3 A SG CYS 153 E CYS 153 1_555 J FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc4 A ND1 HIS 156 E HIS 156 1_555 J FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc5 B NE2 HIS 97 C HIS 97 1_555 K FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? 
metalc ? metalc6 B NE2 HIS 111 C HIS 111 1_555 L FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc7 B NE2 HIS 198 C HIS 198 1_555 K FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc8 B NE2 HIS 212 C HIS 212 1_555 L FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc9 C NE2 HIS 59 D HIS 38 1_555 M FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc10 C SD MET 204 D MET 183 1_555 M FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc11 D NE2 HIS 97 P HIS 97 1_555 N FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc12 D NE2 HIS 111 P HIS 111 1_555 O FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc13 D NE2 HIS 198 P HIS 198 1_555 N FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc14 D NE2 HIS 212 P HIS 212 1_555 O FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc15 E NE2 HIS 59 Q HIS 38 1_555 P FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? 
metalc ? metalc16 E SD MET 204 Q MET 183 1_555 P FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc17 F SG CYS 133 R CYS 133 1_555 Q FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc18 F ND1 HIS 135 R HIS 135 1_555 Q FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc19 F SG CYS 153 R CYS 153 1_555 Q FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc20 F ND1 HIS 156 R HIS 156 1_555 Q FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc21 G NE2 HIS 114 n HIS 114 1_555 S FE HEC . n HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc22 G ND1 HIS 264 n HIS 264 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc23 G NE2 HIS 314 n HIS 314 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc24 G NE2 HIS 315 n HIS 315 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc25 G NE2 HIS 402 n HIS 402 1_555 R FE HEC . n HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? 
metalc ? metalc26 G NE2 HIS 404 n HIS 404 1_555 S FE HEC . n HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc27 H NE2 HIS 72 o HIS 72 1_555 U FE HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
metalc ? metalc28 H SD MET 140 o MET 140 1_555 U FE HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc29 I NE2 HIS 125 p HIS 125 1_555 W FE HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? 
metalc ? metalc30 I SD MET 174 p MET 174 1_555 V FE HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc31 I NE2 HIS 223 p HIS 223 1_555 V FE HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? 
metalc ? metalc32 I SD MET 264 p MET 264 1_555 W FE HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'Fe2 S2' 
_chem_comp.formula_weight    175.82 
_chem_comp.id                FES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE2/S2 (INORGANIC) CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6XKZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 7 FES E 1 501 501 FES FES . 
K 8 HEC C 1 501 501 HEC HEM . 
L 8 HEC C 1 502 502 HEC HEM . 
M 8 HEC D 1 501 501 HEC HEC . 
N 8 HEC P 1 501 501 HEC HEM . 
O 8 HEC P 1 502 502 HEC HEM . 
P 8 HEC Q 1 501 501 HEC HEC . 
Q 7 FES R 1 501 501 FES FES . 
R 8 HEC n 1 601 528 HEC HEM . 
S 8 HEC n 1 602 529 HEC HEM . 
T 9 CU n 1 603 530 CU CU . 
U 8 HEC o 1 301 235 HEC HEC . 
V 8 HEC p 1 501 296 HEC HEC . 
W 8 HEC p 1 502 297 HEC HEC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 FES . . . J 7 185.462 144.919 163.235 1 74.79 ? FE1 FES 501 E 1 
HETATM 2 FE FE2 FES . . . J 7 184.652 147.522 161.801 1 74.79 ? FE2 FES 501 E 1 
HETATM 3 S S1 FES . . . J 7 185.599 145.647 161.167 1 74.79 ? S1 FES 501 E 1 
HETATM 4 S S2 FES . . . J 7 184.568 146.82 163.878 1 74.79 ? S2 FES 501 E 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#