data_6XKZ # _model_server_result.job_id KQ0x0WMw6C2iDZEuwTU5NQ _model_server_result.datetime_utc '2024-11-04 22:35:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 6XKZ # _exptl.entry_id 6XKZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XKZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 R N N ? 8 S N N ? 8 U N N ? 8 V N N ? 8 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 E CYS 138 1_555 A SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 138 R CYS 138 1_555 F SG CYS 155 R CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 C SG CYS 55 D CYS 34 1_555 M CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale2 C SG CYS 58 D CYS 37 1_555 M CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? covale ? covale3 E SG CYS 55 Q CYS 34 1_555 P CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale4 E SG CYS 58 Q CYS 37 1_555 P CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? covale ? covale5 H SG CYS 68 o CYS 68 1_555 U CAB HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.633 ? covale ? covale6 H SG CYS 71 o CYS 71 1_555 U CAC HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? covale ? covale7 I SG CYS 121 p CYS 121 1_555 W CAB HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale8 I SG CYS 124 p CYS 124 1_555 W CAC HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? covale ? covale9 I SG CYS 219 p CYS 219 1_555 V CAB HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale10 I SG CYS 222 p CYS 222 1_555 V CAC HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? metalc ? metalc1 A SG CYS 133 E CYS 133 1_555 J FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A ND1 HIS 135 E HIS 135 1_555 J FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A SG CYS 153 E CYS 153 1_555 J FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A ND1 HIS 156 E HIS 156 1_555 J FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 B NE2 HIS 97 C HIS 97 1_555 K FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc6 B NE2 HIS 111 C HIS 111 1_555 L FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 B NE2 HIS 198 C HIS 198 1_555 K FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 B NE2 HIS 212 C HIS 212 1_555 L FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc9 C NE2 HIS 59 D HIS 38 1_555 M FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc10 C SD MET 204 D MET 183 1_555 M FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc11 D NE2 HIS 97 P HIS 97 1_555 N FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc12 D NE2 HIS 111 P HIS 111 1_555 O FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc13 D NE2 HIS 198 P HIS 198 1_555 N FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc14 D NE2 HIS 212 P HIS 212 1_555 O FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc15 E NE2 HIS 59 Q HIS 38 1_555 P FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc16 E SD MET 204 Q MET 183 1_555 P FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc17 F SG CYS 133 R CYS 133 1_555 Q FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc18 F ND1 HIS 135 R HIS 135 1_555 Q FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc19 F SG CYS 153 R CYS 153 1_555 Q FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc20 F ND1 HIS 156 R HIS 156 1_555 Q FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc21 G NE2 HIS 114 n HIS 114 1_555 S FE HEC . n HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc22 G ND1 HIS 264 n HIS 264 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc23 G NE2 HIS 314 n HIS 314 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc24 G NE2 HIS 315 n HIS 315 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc25 G NE2 HIS 402 n HIS 402 1_555 R FE HEC . n HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? metalc ? metalc26 G NE2 HIS 404 n HIS 404 1_555 S FE HEC . n HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc27 H NE2 HIS 72 o HIS 72 1_555 U FE HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc28 H SD MET 140 o MET 140 1_555 U FE HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc29 I NE2 HIS 125 p HIS 125 1_555 W FE HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc30 I SD MET 174 p MET 174 1_555 V FE HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc31 I NE2 HIS 223 p HIS 223 1_555 V FE HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc32 I SD MET 264 p MET 264 1_555 W FE HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XKZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 7 FES E 1 501 501 FES FES . K 8 HEC C 1 501 501 HEC HEM . L 8 HEC C 1 502 502 HEC HEM . M 8 HEC D 1 501 501 HEC HEC . N 8 HEC P 1 501 501 HEC HEM . O 8 HEC P 1 502 502 HEC HEM . P 8 HEC Q 1 501 501 HEC HEC . Q 7 FES R 1 501 501 FES FES . R 8 HEC n 1 601 528 HEC HEM . S 8 HEC n 1 602 529 HEC HEM . T 9 CU n 1 603 530 CU CU . U 8 HEC o 1 301 235 HEC HEC . V 8 HEC p 1 501 296 HEC HEC . W 8 HEC p 1 502 297 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . L 8 167.212 177.205 164.458 1 49.13 ? FE HEC 502 C 1 HETATM 2 C CHA HEC . . . L 8 165.933 179.952 163.017 1 54.45 ? CHA HEC 502 C 1 HETATM 3 C CHB HEC . . . L 8 164.584 177.129 166.722 1 53.51 ? CHB HEC 502 C 1 HETATM 4 C CHC HEC . . . L 8 168.232 174.096 165.721 1 53.88 ? CHC HEC 502 C 1 HETATM 5 C CHD HEC . . . L 8 170.02 177.345 162.591 1 54.79 ? CHD HEC 502 C 1 HETATM 6 N NA HEC . . . L 8 165.562 178.339 164.821 1 54.13 ? NA HEC 502 C 1 HETATM 7 C C1A HEC . . . L 8 165.192 179.43 164.057 1 54.77 ? C1A HEC 502 C 1 HETATM 8 C C2A HEC . . . L 8 163.902 179.899 164.537 1 54.02 ? C2A HEC 502 C 1 HETATM 9 C C3A HEC . . . L 8 163.541 179.116 165.565 1 54.24 ? C3A HEC 502 C 1 HETATM 10 C C4A HEC . . . L 8 164.578 178.119 165.765 1 53.62 ? C4A HEC 502 C 1 HETATM 11 C CMA HEC . . . L 8 162.243 179.228 166.398 1 54.37 ? CMA HEC 502 C 1 HETATM 12 C CAA HEC . . . L 8 163.1 181.101 163.966 1 53.47 ? CAA HEC 502 C 1 HETATM 13 C CBA HEC . . . L 8 162.787 180.951 162.479 1 54.6 ? CBA HEC 502 C 1 HETATM 14 C CGA HEC . . . L 8 162.517 179.52 162.108 1 54.45 ? CGA HEC 502 C 1 HETATM 15 O O1A HEC . . . L 8 161.586 178.916 162.698 1 54.42 ? O1A HEC 502 C 1 HETATM 16 O O2A HEC . . . L 8 163.222 178.992 161.21 1 54.26 ? O2A HEC 502 C 1 HETATM 17 N NB HEC . . . L 8 166.509 175.836 165.927 1 54.3 ? NB HEC 502 C 1 HETATM 18 C C1B HEC . . . L 8 165.46 176.064 166.796 1 54.36 ? C1B HEC 502 C 1 HETATM 19 C C2B HEC . . . L 8 165.446 175.006 167.796 1 53.69 ? C2B HEC 502 C 1 HETATM 20 C C3B HEC . . . L 8 166.462 174.165 167.518 1 52.92 ? C3B HEC 502 C 1 HETATM 21 C C4B HEC . . . L 8 167.141 174.674 166.339 1 53.57 ? C4B HEC 502 C 1 HETATM 22 C CMB HEC . . . L 8 164.416 174.926 168.953 1 53.12 ? CMB HEC 502 C 1 HETATM 23 C CAB HEC . . . L 8 166.921 172.866 168.238 1 53.69 ? CAB HEC 502 C 1 HETATM 24 C CBB HEC . . . L 8 166.248 172.26 169.226 1 52.92 ? CBB HEC 502 C 1 HETATM 25 N NC HEC . . . L 8 168.855 175.952 164.237 1 53.5 ? NC HEC 502 C 1 HETATM 26 C C1C HEC . . . L 8 169.035 174.688 164.765 1 54.17 ? C1C HEC 502 C 1 HETATM 27 C C2C HEC . . . L 8 170.184 174.086 164.115 1 54.48 ? C2C HEC 502 C 1 HETATM 28 C C3C HEC . . . L 8 170.679 174.982 163.237 1 54.33 ? C3C HEC 502 C 1 HETATM 29 C C4C HEC . . . L 8 169.857 176.178 163.316 1 54.25 ? C4C HEC 502 C 1 HETATM 30 C CMC HEC . . . L 8 170.67 172.649 164.431 1 54.16 ? CMC HEC 502 C 1 HETATM 31 C CAC HEC . . . L 8 171.904 174.881 162.291 1 54.77 ? CAC HEC 502 C 1 HETATM 32 C CBC HEC . . . L 8 172.882 173.977 162.428 1 54.41 ? CBC HEC 502 C 1 HETATM 33 N ND HEC . . . L 8 167.874 178.433 163.092 1 54.38 ? ND HEC 502 C 1 HETATM 34 C C1D HEC . . . L 8 169.056 178.312 162.387 1 54.81 ? C1D HEC 502 C 1 HETATM 35 C C2D HEC . . . L 8 169.091 179.381 161.411 1 54.72 ? C2D HEC 502 C 1 HETATM 36 C C3D HEC . . . L 8 167.961 180.095 161.538 1 54.44 ? C3D HEC 502 C 1 HETATM 37 C C4D HEC . . . L 8 167.169 179.507 162.592 1 54.3 ? C4D HEC 502 C 1 HETATM 38 C CMD HEC . . . L 8 170.254 179.616 160.421 1 55.22 ? CMD HEC 502 C 1 HETATM 39 C CAD HEC . . . L 8 167.512 181.332 160.735 1 54.99 ? CAD HEC 502 C 1 HETATM 40 C CBD HEC . . . L 8 167.624 182.565 161.625 1 55.19 ? CBD HEC 502 C 1 HETATM 41 C CGD HEC . . . L 8 167.165 183.785 160.875 1 55.12 ? CGD HEC 502 C 1 HETATM 42 O O1D HEC . . . L 8 166.471 183.634 159.835 1 54.69 ? O1D HEC 502 C 1 HETATM 43 O O2D HEC . . . L 8 167.495 184.908 161.333 1 55.16 ? O2D HEC 502 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #