data_6XKZ # _model_server_result.job_id yb0u0lMJJf2unYj7y8OL4Q _model_server_result.datetime_utc '2024-11-04 22:32:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":502}' # _entry.id 6XKZ # _exptl.entry_id 6XKZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XKZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 K N N ? 8 L N N ? 8 M N N ? 8 N N N ? 8 O N N ? 8 P N N ? 8 R N N ? 8 S N N ? 8 U N N ? 8 V N N ? 8 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 138 E CYS 138 1_555 A SG CYS 155 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 138 R CYS 138 1_555 F SG CYS 155 R CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 C SG CYS 55 D CYS 34 1_555 M CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? covale ? covale2 C SG CYS 58 D CYS 37 1_555 M CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? covale ? covale3 E SG CYS 55 Q CYS 34 1_555 P CAB HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale4 E SG CYS 58 Q CYS 37 1_555 P CAC HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? covale ? covale5 H SG CYS 68 o CYS 68 1_555 U CAB HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.633 ? covale ? covale6 H SG CYS 71 o CYS 71 1_555 U CAC HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.695 ? covale ? covale7 I SG CYS 121 p CYS 121 1_555 W CAB HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale8 I SG CYS 124 p CYS 124 1_555 W CAC HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.659 ? covale ? covale9 I SG CYS 219 p CYS 219 1_555 V CAB HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale10 I SG CYS 222 p CYS 222 1_555 V CAC HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? metalc ? metalc1 A SG CYS 133 E CYS 133 1_555 J FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A ND1 HIS 135 E HIS 135 1_555 J FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A SG CYS 153 E CYS 153 1_555 J FE1 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 A ND1 HIS 156 E HIS 156 1_555 J FE2 FES . E FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 B NE2 HIS 97 C HIS 97 1_555 K FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc6 B NE2 HIS 111 C HIS 111 1_555 L FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc7 B NE2 HIS 198 C HIS 198 1_555 K FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 B NE2 HIS 212 C HIS 212 1_555 L FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc9 C NE2 HIS 59 D HIS 38 1_555 M FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc10 C SD MET 204 D MET 183 1_555 M FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc11 D NE2 HIS 97 P HIS 97 1_555 N FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc12 D NE2 HIS 111 P HIS 111 1_555 O FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc13 D NE2 HIS 198 P HIS 198 1_555 N FE HEC . P HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc14 D NE2 HIS 212 P HIS 212 1_555 O FE HEC . P HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc15 E NE2 HIS 59 Q HIS 38 1_555 P FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc16 E SD MET 204 Q MET 183 1_555 P FE HEC . Q HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc17 F SG CYS 133 R CYS 133 1_555 Q FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc18 F ND1 HIS 135 R HIS 135 1_555 Q FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc19 F SG CYS 153 R CYS 153 1_555 Q FE1 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc20 F ND1 HIS 156 R HIS 156 1_555 Q FE2 FES . R FES 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc21 G NE2 HIS 114 n HIS 114 1_555 S FE HEC . n HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc22 G ND1 HIS 264 n HIS 264 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc23 G NE2 HIS 314 n HIS 314 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc24 G NE2 HIS 315 n HIS 315 1_555 T CU CU . n CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc25 G NE2 HIS 402 n HIS 402 1_555 R FE HEC . n HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 ? metalc ? metalc26 G NE2 HIS 404 n HIS 404 1_555 S FE HEC . n HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc27 H NE2 HIS 72 o HIS 72 1_555 U FE HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc28 H SD MET 140 o MET 140 1_555 U FE HEC . o HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc29 I NE2 HIS 125 p HIS 125 1_555 W FE HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc30 I SD MET 174 p MET 174 1_555 V FE HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc31 I NE2 HIS 223 p HIS 223 1_555 V FE HEC . p HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.87 ? metalc ? metalc32 I SD MET 264 p MET 264 1_555 W FE HEC . p HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6XKZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 7 FES E 1 501 501 FES FES . K 8 HEC C 1 501 501 HEC HEM . L 8 HEC C 1 502 502 HEC HEM . M 8 HEC D 1 501 501 HEC HEC . N 8 HEC P 1 501 501 HEC HEM . O 8 HEC P 1 502 502 HEC HEM . P 8 HEC Q 1 501 501 HEC HEC . Q 7 FES R 1 501 501 FES FES . R 8 HEC n 1 601 528 HEC HEM . S 8 HEC n 1 602 529 HEC HEM . T 9 CU n 1 603 530 CU CU . U 8 HEC o 1 301 235 HEC HEC . V 8 HEC p 1 501 296 HEC HEC . W 8 HEC p 1 502 297 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . W 8 123.836 112.45 123.417 1 28.65 ? FE HEC 502 p 1 HETATM 2 C CHA HEC . . . W 8 122.937 109.325 122.489 1 28.62 ? CHA HEC 502 p 1 HETATM 3 C CHB HEC . . . W 8 122.329 112.11 126.356 1 31.38 ? CHB HEC 502 p 1 HETATM 4 C CHC HEC . . . W 8 125.031 115.471 124.441 1 29.12 ? CHC HEC 502 p 1 HETATM 5 C CHD HEC . . . W 8 125.121 113.063 120.337 1 28.34 ? CHD HEC 502 p 1 HETATM 6 N NA HEC . . . W 8 122.849 111.052 124.23 1 25.7 ? NA HEC 502 p 1 HETATM 7 C C1A HEC . . . W 8 122.589 109.795 123.731 1 28.48 ? C1A HEC 502 p 1 HETATM 8 C C2A HEC . . . W 8 121.876 109.015 124.726 1 26.02 ? C2A HEC 502 p 1 HETATM 9 C C3A HEC . . . W 8 121.707 109.768 125.797 1 25.49 ? C3A HEC 502 p 1 HETATM 10 C C4A HEC . . . W 8 122.314 111.05 125.49 1 28.06 ? C4A HEC 502 p 1 HETATM 11 C CMA HEC . . . W 8 121.006 109.398 127.125 1 24.26 ? CMA HEC 502 p 1 HETATM 12 C CAA HEC . . . W 8 121.428 107.571 124.531 1 24.96 ? CAA HEC 502 p 1 HETATM 13 C CBA HEC . . . W 8 120.055 107.595 123.926 1 27.15 ? CBA HEC 502 p 1 HETATM 14 C CGA HEC . . . W 8 119.632 106.17 123.828 1 30.71 ? CGA HEC 502 p 1 HETATM 15 O O1A HEC . . . W 8 118.914 105.904 122.839 1 36.72 ? O1A HEC 502 p 1 HETATM 16 O O2A HEC . . . W 8 120.001 105.346 124.725 1 33.5 ? O2A HEC 502 p 1 HETATM 17 N NB HEC . . . W 8 123.72 113.564 125.07 1 23.75 ? NB HEC 502 p 1 HETATM 18 C C1B HEC . . . W 8 123.019 113.267 126.194 1 26.28 ? C1B HEC 502 p 1 HETATM 19 C C2B HEC . . . W 8 123.149 114.318 127.173 1 24.28 ? C2B HEC 502 p 1 HETATM 20 C C3B HEC . . . W 8 123.898 115.27 126.615 1 24.69 ? C3B HEC 502 p 1 HETATM 21 C C4B HEC . . . W 8 124.26 114.791 125.314 1 24.18 ? C4B HEC 502 p 1 HETATM 22 C CMB HEC . . . W 8 122.45 114.347 128.541 1 22.55 ? CMB HEC 502 p 1 HETATM 23 C CAB HEC . . . W 8 124.344 116.632 127.198 1 27.66 ? CAB HEC 502 p 1 HETATM 24 C CBB HEC . . . W 8 125.255 116.447 128.444 1 25.44 ? CBB HEC 502 p 1 HETATM 25 N NC HEC . . . W 8 124.82 113.948 122.527 1 28.63 ? NC HEC 502 p 1 HETATM 26 C C1C HEC . . . W 8 125.312 115.087 123.142 1 33.31 ? C1C HEC 502 p 1 HETATM 27 C C2C HEC . . . W 8 126.406 115.661 122.339 1 30.7 ? C2C HEC 502 p 1 HETATM 28 C C3C HEC . . . W 8 126.187 115.171 121.129 1 32.36 ? C3C HEC 502 p 1 HETATM 29 C C4C HEC . . . W 8 125.342 113.995 121.278 1 28.79 ? C4C HEC 502 p 1 HETATM 30 C CMC HEC . . . W 8 126.875 117.123 122.52 1 28.65 ? CMC HEC 502 p 1 HETATM 31 C CAC HEC . . . W 8 126.896 115.672 119.85 1 34.68 ? CAC HEC 502 p 1 HETATM 32 C CBC HEC . . . W 8 128.392 115.472 119.962 1 35.19 ? CBC HEC 502 p 1 HETATM 33 N ND HEC . . . W 8 124.008 111.366 121.727 1 28.58 ? ND HEC 502 p 1 HETATM 34 C C1D HEC . . . W 8 124.57 111.83 120.546 1 29.79 ? C1D HEC 502 p 1 HETATM 35 C C2D HEC . . . W 8 124.469 110.819 119.505 1 27.83 ? C2D HEC 502 p 1 HETATM 36 C C3D HEC . . . W 8 123.78 109.648 120.149 1 27.9 ? C3D HEC 502 p 1 HETATM 37 C C4D HEC . . . W 8 123.532 110.075 121.52 1 29.19 ? C4D HEC 502 p 1 HETATM 38 C CMD HEC . . . W 8 124.924 110.901 118.05 1 30.71 ? CMD HEC 502 p 1 HETATM 39 C CAD HEC . . . W 8 123.455 108.335 119.442 1 26.33 ? CAD HEC 502 p 1 HETATM 40 C CBD HEC . . . W 8 124.701 107.496 119.543 1 29.55 ? CBD HEC 502 p 1 HETATM 41 C CGD HEC . . . W 8 124.446 106.205 118.837 1 32.11 ? CGD HEC 502 p 1 HETATM 42 O O1D HEC . . . W 8 124.596 106.239 117.595 1 29.15 ? O1D HEC 502 p 1 HETATM 43 O O2D HEC . . . W 8 124.093 105.179 119.498 1 36.21 ? O2D HEC 502 p 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #