data_6XL3
#
_model_server_result.job_id            dxXNuiO3tjb7x6druZyPzQ 
_model_server_result.datetime_utc      '2024-10-25 08:28:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6xl3 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":303}' 
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_entry.id    6XL3 
#
_exptl.entry_id    6XL3 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              142.282 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DECANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6XL3 
_cell.length_a            108.911 
_cell.length_b            108.911 
_cell.length_c            116.074 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6XL3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    'P 3 2"' 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,L 1 1,2,3 
B,I,J,K,M 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 54.4555 -94.319693 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 108.911 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 204 A LYS 204 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.282 ? 
covale ? covale2 B NZ LYS 204 B LYS 204 1_555 I C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.537 ? 
#
_chem_comp.formula           'C10 H22' 
_chem_comp.formula_weight    142.282 
_chem_comp.id                D10 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 D10 sing 174 n n 
C1 H11 D10 sing 175 n n 
C1 H12 D10 sing 176 n n 
C1 H13 D10 sing 177 n n 
C2 C3 D10 sing 178 n n 
C2 H21 D10 sing 179 n n 
C2 H22 D10 sing 180 n n 
C3 C4 D10 sing 181 n n 
C3 H31 D10 sing 182 n n 
C3 H32 D10 sing 183 n n 
C4 C5 D10 sing 184 n n 
C4 H41 D10 sing 185 n n 
C4 H42 D10 sing 186 n n 
C5 C6 D10 sing 187 n n 
C5 H51 D10 sing 188 n n 
C5 H52 D10 sing 189 n n 
C6 C7 D10 sing 190 n n 
C6 H61 D10 sing 191 n n 
C6 H62 D10 sing 192 n n 
C7 C8 D10 sing 193 n n 
C7 H71 D10 sing 194 n n 
C7 H72 D10 sing 195 n n 
C8 C9 D10 sing 196 n n 
C8 H81 D10 sing 197 n n 
C8 H82 D10 sing 198 n n 
C9 C10 D10 sing 199 n n 
C9 H91 D10 sing 200 n n 
C9 H92 D10 sing 201 n n 
C10 H101 D10 sing 202 n n 
C10 H102 D10 sing 203 n n 
C10 H103 D10 sing 204 n n 
#
_atom_sites.entry_id                     6XL3 
_atom_sites.fract_transf_matrix[1][1]    0.009182 
_atom_sites.fract_transf_matrix[1][2]    0.005301 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010602 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008615 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 RET A 1 301 1 RET RET . 
D 3 CL A 1 302 1 CL CL . 
E 3 CL A 1 303 3 CL CL . 
F 4 C14 A 1 304 1 C14 C14 . 
G 4 C14 A 1 305 2 C14 C14 . 
H 5 BOG A 1 306 1 BOG BOG . 
I 2 RET B 1 301 2 RET RET . 
J 3 CL B 1 302 2 CL CL . 
K 6 D10 B 1 303 1 D10 D10 . 
L 7 HOH A 1 401 125 HOH HOH . 
L 7 HOH A 2 402 123 HOH HOH . 
L 7 HOH A 3 403 19 HOH HOH . 
L 7 HOH A 4 404 43 HOH HOH . 
L 7 HOH A 5 405 124 HOH HOH . 
L 7 HOH A 6 406 28 HOH HOH . 
L 7 HOH A 7 407 7 HOH HOH . 
L 7 HOH A 8 408 4 HOH HOH . 
L 7 HOH A 9 409 42 HOH HOH . 
L 7 HOH A 10 410 5 HOH HOH . 
L 7 HOH A 11 411 27 HOH HOH . 
L 7 HOH A 12 412 39 HOH HOH . 
L 7 HOH A 13 413 58 HOH HOH . 
L 7 HOH A 14 414 126 HOH HOH . 
L 7 HOH A 15 415 45 HOH HOH . 
L 7 HOH A 16 416 121 HOH HOH . 
L 7 HOH A 17 417 20 HOH HOH . 
L 7 HOH A 18 418 18 HOH HOH . 
L 7 HOH A 19 419 24 HOH HOH . 
L 7 HOH A 20 420 117 HOH HOH . 
L 7 HOH A 21 421 122 HOH HOH . 
L 7 HOH A 22 422 8 HOH HOH . 
L 7 HOH A 23 423 127 HOH HOH . 
M 7 HOH B 1 401 119 HOH HOH . 
M 7 HOH B 2 402 22 HOH HOH . 
M 7 HOH B 3 403 48 HOH HOH . 
M 7 HOH B 4 404 3 HOH HOH . 
M 7 HOH B 5 405 98 HOH HOH . 
M 7 HOH B 6 406 25 HOH HOH . 
M 7 HOH B 7 407 101 HOH HOH . 
M 7 HOH B 8 408 63 HOH HOH . 
M 7 HOH B 9 409 26 HOH HOH . 
M 7 HOH B 10 410 23 HOH HOH . 
M 7 HOH B 11 411 103 HOH HOH . 
M 7 HOH B 12 412 65 HOH HOH . 
M 7 HOH B 13 413 9 HOH HOH . 
M 7 HOH B 14 414 40 HOH HOH . 
M 7 HOH B 15 415 6 HOH HOH . 
M 7 HOH B 16 416 77 HOH HOH . 
M 7 HOH B 17 417 56 HOH HOH . 
M 7 HOH B 18 418 31 HOH HOH . 
M 7 HOH B 19 419 34 HOH HOH . 
M 7 HOH B 20 420 32 HOH HOH . 
M 7 HOH B 21 421 102 HOH HOH . 
M 7 HOH B 22 422 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 D10 . . . K 6 46.509 -26.501 -8.137 1 47.24 ? C1 D10 303 B 1 
HETATM 2 C C2 D10 . . . K 6 46.155 -25.207 -8.871 1 47.35 ? C2 D10 303 B 1 
HETATM 3 C C3 D10 . . . K 6 46.537 -25.32 -10.351 1 48.96 ? C3 D10 303 B 1 
HETATM 4 C C4 D10 . . . K 6 45.641 -24.403 -11.184 1 45.71 ? C4 D10 303 B 1 
HETATM 5 C C5 D10 . . . K 6 45.881 -24.612 -12.68 1 45.07 ? C5 D10 303 B 1 
HETATM 6 C C6 D10 . . . K 6 44.802 -23.824 -13.429 1 43.77 ? C6 D10 303 B 1 
HETATM 7 C C7 D10 . . . K 6 44.993 -23.967 -14.937 1 48.44 ? C7 D10 303 B 1 
HETATM 8 C C8 D10 . . . K 6 44.01 -23.049 -15.664 1 42.14 ? C8 D10 303 B 1 
HETATM 9 C C9 D10 . . . K 6 43.508 -23.705 -16.95 1 44.12 ? C9 D10 303 B 1 
HETATM 10 C C10 D10 . . . K 6 44.401 -23.436 -18.164 1 42.53 ? C10 D10 303 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           621 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           10 
#