data_6XLE # _model_server_result.job_id en_3Lx0JUE5XkH9SSOrTAw _model_server_result.datetime_utc '2024-10-10 23:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6xle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 6XLE # _exptl.entry_id 6XLE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6XLE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 33 A GLU 33 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc2 A OD1 ASN 37 A ASN 37 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc3 A O ASN 92 A ASN 92 1_555 G K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc4 A O THR 95 A THR 95 1_555 G K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? metalc ? metalc5 A O LYS 98 A LYS 98 1_555 G K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc6 A O GLY 121 A GLY 121 1_555 G K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc7 A OH TYR 125 A TYR 125 1_555 G K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc8 E O3G ANP . A ANP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc9 E O1B ANP . A ANP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc10 E O1A ANP . A ANP 801 1_555 F MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc11 E O2A ANP . A ANP 801 1_555 G K K . A K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.205 ? metalc ? metalc12 B OE2 GLU 33 B GLU 33 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc13 B OD1 ASN 37 B ASN 37 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc14 B O ASN 92 B ASN 92 1_555 J K K . B K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc15 B O THR 95 B THR 95 1_555 J K K . B K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc16 B O LYS 98 B LYS 98 1_555 J K K . B K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc17 B O GLY 121 B GLY 121 1_555 J K K . B K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc18 B OH TYR 125 B TYR 125 1_555 J K K . B K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.393 ? metalc ? metalc19 H O3G ANP . B ANP 801 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc20 H O1B ANP . B ANP 801 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc21 H O1A ANP . B ANP 801 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc22 H O2A ANP . B ANP 801 1_555 J K K . B K 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6XLE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 801 701 ANP ANP . F 4 MG A 1 802 801 MG MG . G 5 K A 1 803 901 K K . H 3 ANP B 1 801 701 ANP ANP . I 4 MG B 1 802 801 MG MG . J 5 K B 1 803 901 K K . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 3 143.885 143.901 170.867 1 22.7 ? PG ANP 801 B 1 HETATM 2 O O1G ANP . . . H 3 143.663 142.457 171.187 1 22.7 ? O1G ANP 801 B 1 HETATM 3 O O2G ANP . . . H 3 142.752 144.405 169.894 1 22.7 ? O2G ANP 801 B 1 HETATM 4 O O3G ANP . . . H 3 145.292 144.075 170.167 1 22.7 ? O3G ANP 801 B 1 HETATM 5 P PB ANP . . . H 3 145.216 144.46 173.211 1 22.7 ? PB ANP 801 B 1 HETATM 6 O O1B ANP . . . H 3 146.442 144.638 172.376 1 22.7 ? O1B ANP 801 B 1 HETATM 7 O O2B ANP . . . H 3 145.279 145.415 174.439 1 22.7 ? O2B ANP 801 B 1 HETATM 8 N N3B ANP . . . H 3 143.857 144.809 172.295 1 22.7 ? N3B ANP 801 B 1 HETATM 9 P PA ANP . . . H 3 146.407 142.295 174.35 1 22.7 ? PA ANP 801 B 1 HETATM 10 O O1A ANP . . . H 3 147.403 141.937 173.315 1 22.7 ? O1A ANP 801 B 1 HETATM 11 O O2A ANP . . . H 3 145.889 141.109 175.169 1 22.7 ? O2A ANP 801 B 1 HETATM 12 O O3A ANP . . . H 3 145.135 142.984 173.7 1 22.7 ? O3A ANP 801 B 1 HETATM 13 O O5' ANP . . . H 3 147.047 143.404 175.279 1 22.7 ? O5' ANP 801 B 1 HETATM 14 C C5' ANP . . . H 3 146.986 143.302 176.716 1 22.7 ? C5' ANP 801 B 1 HETATM 15 C C4' ANP . . . H 3 147.76 144.45 177.312 1 22.7 ? C4' ANP 801 B 1 HETATM 16 O O4' ANP . . . H 3 149.091 144.009 177.65 1 22.7 ? O4' ANP 801 B 1 HETATM 17 C C3' ANP . . . H 3 147.967 145.642 176.386 1 22.7 ? C3' ANP 801 B 1 HETATM 18 O O3' ANP . . . H 3 146.854 146.527 176.438 1 22.7 ? O3' ANP 801 B 1 HETATM 19 C C2' ANP . . . H 3 149.235 146.282 176.955 1 22.7 ? C2' ANP 801 B 1 HETATM 20 O O2' ANP . . . H 3 148.945 147.166 178.032 1 22.7 ? O2' ANP 801 B 1 HETATM 21 C C1' ANP . . . H 3 150.019 145.062 177.456 1 22.7 ? C1' ANP 801 B 1 HETATM 22 N N9 ANP . . . H 3 151.05 144.602 176.534 1 22.7 ? N9 ANP 801 B 1 HETATM 23 C C8 ANP . . . H 3 150.941 143.607 175.597 1 22.7 ? C8 ANP 801 B 1 HETATM 24 N N7 ANP . . . H 3 152.033 143.403 174.9 1 22.7 ? N7 ANP 801 B 1 HETATM 25 C C5 ANP . . . H 3 152.924 144.334 175.415 1 22.7 ? C5 ANP 801 B 1 HETATM 26 C C6 ANP . . . H 3 154.266 144.634 175.101 1 22.7 ? C6 ANP 801 B 1 HETATM 27 N N6 ANP . . . H 3 154.968 144.003 174.158 1 22.7 ? N6 ANP 801 B 1 HETATM 28 N N1 ANP . . . H 3 154.867 145.622 175.804 1 22.7 ? N1 ANP 801 B 1 HETATM 29 C C2 ANP . . . H 3 154.168 146.256 176.75 1 22.7 ? C2 ANP 801 B 1 HETATM 30 N N3 ANP . . . H 3 152.903 146.06 177.131 1 22.7 ? N3 ANP 801 B 1 HETATM 31 C C4 ANP . . . H 3 152.334 145.078 176.419 1 22.7 ? C4 ANP 801 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #